Rorug04G0438100

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012593
Physical Location & Seq
Reverse (-)
59550969 .. 59551556
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0438100.1

Sequence Viewer

Length: 477 bp
ATGGGCTGGAAGCACGCCAGCAAGGCCGGCAGCAGGTTGAAGCTGCTTGAGACAATCAATCCCACCAGATCCATAGACTTAAGAGCAAAATTAGACGATGATGATCGGGTGGATTATACCGTCCTACCAGAAGTGCCAAGTTTATGTGTCCTGGGTTCCTGCAATGGCTTGATATGCCGGAAAGAAGTTGGCTTGATTTGCCGAGAAGAAGTTGACGACGGGTTGATATTGCAAGAAGACGAGGAAGAAGAGGAGGGAGAGGAAAAGGAAGATGAAGAGAAAGACGAGGAGGAAGAAGAGGAGGGAGAGGAAGAAAAAGAGGAAAAGGAAAACGAAGAAGAGGAAGACGAGGAGGAGAACGACGATGATCGTGATCTTATCATATGGAATCCTTCTACTCAAGATACATACAAGCTACCCAAAACCAAAATCAAAAGAGAAAATTTCGCAAACAGTACATCAAGTAAAGACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

158

Amino Acids

18.3

Weight (kDa)

4.22

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 442
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 33
AflII CTTAAG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 43, 415
AluI AGCT 2 cut(s) 43, 415
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 30, 43
ApoI RAATTY 1 cut(s) 442
BbsI GAAGAC 2 cut(s) 243, 351
BbvI GCAGC 2 cut(s) 30, 42
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 2 cut(s) 31, 44
BlsI GCNGC 2 cut(s) 32, 45
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 152
BpiI GAAGAC 2 cut(s) 243, 351
BpuEI CTTGAG 2 cut(s) 68, 384
BsaBI GATNNNNATC 2 cut(s) 102, 372
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 102, 372
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 151
BseJI GATNNNNATC 2 cut(s) 102, 372
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 169
BseRI GAGGAG 5 cut(s) 266, 302, 314, 365, 368
BseXI GCAGC 2 cut(s) 30, 42
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 178
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 68, 103, 367, 373
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 4 cut(s) 68, 103, 367, 373
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 121, 455
Bst6I CTCTTC 4 cut(s) 243, 270, 291, 333
BstAFI CTTAAG 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 15, 19, 28
BstKTI GATC 4 cut(s) 71, 106, 370, 376
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 68, 103, 367, 373
BstMWI GCNNNNNNNGC 4 cut(s) 23, 27, 174, 198
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 30, 42
BstV2I GAAGAC 2 cut(s) 243, 351
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 26
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 15, 19, 28
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 1 cut(s) 456
CviJI RGCY 6 cut(s) 6, 26, 43, 168, 192, 415
CviKI_1 RGCY 6 cut(s) 6, 26, 43, 168, 192, 415
CviQI GTAC 1 cut(s) 456
DpnI GATC 4 cut(s) 70, 105, 369, 375
DpnII GATC 4 cut(s) 68, 103, 367, 373
Eam1104I CTCTTC 4 cut(s) 243, 270, 291, 333
EarI CTCTTC 4 cut(s) 243, 270, 291, 333
EcoRII CCWGG 1 cut(s) 150
FaiI YATR 7 cut(s) 74, 117, 145, 175, 383, 385, 409
FauNDI CATATG 1 cut(s) 383
Fnu4HI GCNGC 2 cut(s) 31, 44
Fsp4HI GCNGC 2 cut(s) 31, 44
GluI GCNGC 2 cut(s) 31, 44
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 27, 178
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 1 cut(s) 388
HpaII CCGG 2 cut(s) 27, 178
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 371, 401
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 2 cut(s) 221, 365
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 2 cut(s) 121, 455
HpyCH4V TGCA 2 cut(s) 162, 232
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 27, 174, 198
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 4 cut(s) 68, 103, 367, 373
LpnPI CCDG 9 cut(s) 19, 31, 40, 79, 137, 141, 164, 172, 191
Lsp1109I GCAGC 2 cut(s) 30, 42
MalI GATC 4 cut(s) 70, 105, 369, 375
MboI GATC 4 cut(s) 68, 103, 367, 373
MflI RGATCY 1 cut(s) 68
MluCI AATT 2 cut(s) 89, 442
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 2 cut(s) 80, 475
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 2 cut(s) 27, 178
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 4 cut(s) 23, 27, 174, 198
NaeI GCCGGC 1 cut(s) 28
NdeI CATATG 1 cut(s) 383
NdeII GATC 4 cut(s) 68, 103, 367, 373
NgoMIV GCCGGC 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 227
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 32, 45
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SaqAI TTAA 2 cut(s) 80, 475
SatI GCNGC 2 cut(s) 31, 44
Sau3AI GATC 4 cut(s) 68, 103, 367, 373
ScrFI CCNGG 1 cut(s) 152
SetI ASST 3 cut(s) 38, 45, 417
SmlI CTYRAG 3 cut(s) 47, 79, 399
SmoI CTYRAG 3 cut(s) 47, 79, 399
Sse9I AATT 2 cut(s) 89, 442
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 121, 455
TasI AATT 2 cut(s) 89, 442
TatI WGTACW 1 cut(s) 455
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 80, 475
Tru9I TTAA 2 cut(s) 80, 475
TseI GCWGC 2 cut(s) 30, 43
TspDTI ATGAA 1 cut(s) 288
Vha464I CTTAAG 1 cut(s) 79
XapI RAATTY 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.