Rmu_sc0007562.1_g000002

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007562.1
OG0012593
Physical Location & Seq
Reverse (-)
953 .. 5035
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007562.1_g000002.1.cds

Sequence Viewer

Length: 1236 bp
atgcaggacaacagaaatgtcattagcttcggcaggactaacaacattggctctaaggtttttggactgcataactccttactcccactaactggagctcaggatgcaggtataagcggagttaaacctggaccacaaattggaaggcctttaaaagtagtaagcgcagctttgcaggctccaaaccaccaacaactgattgagacatcaacaacagaacatcagcatccacctttgagtgatcagatggtgggtcgcctcttgagacaaattgcagagccccagcaacaacctgatcaacagcagttactagagggtgacagagagaggaggacagaatcaggagctgggaggacagcatcaggagctggagacagtcatttggaaaataggagtgctaatgaagatgcccctgtggaagaaaataccgagtctttcttgtcctatgaggatgacagtgctggtggtggtacaagcactccattcaaggcttcaaagcgtcgtggtgggaaaaaaaagcaagaaagggatgtacggtttagaccaaattcaacaacgtttgcaacatcttcgtttgatagaaatgtgaagatatgggatgcagccagaccaagtgaatcaatatccaagcttgaagggcacactgagcatgtaatgtcagtggattttcacccaaggaagttcaatctcctttcatcatgcgatagtaacgatgaaatccgactgtggaatgtcaaccaatctaagtgcacaagcatgtttaagggagcaactaaacaagtcagattccagcctcgatttggaaaatatttggctgctgcttcaggaaatagtgtcaatacttttgatgttgagactgccagtttcgacttgtattcgaagggatctggacatgccaaagatgtcctttcaatttgctgggatacaagtgggaagtatcttgcctctgttagtgaagacagtgcacggatttggtcaactgcatcaagcggaaaatgcatatatgaactccactcaaatggcaacaaattccaatcatgcacatttcatcctggatattcactactcttgatcattggttgttacgagtcccttgagttgtggagtccaagtgagagcaataaaactatgactgttccagcgcacaaggggctagttgctgcactggcgtcatccccaaagactgacatggttgcctctgggagccatgatcaggtcgtcaaactatggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

411

Amino Acids

44.97

Weight (kDa)

8.14

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB7I CCANNNNNTGG 2 cut(s) 92, 140
AciI CCGC 2 cut(s) 117, 990
AclI AACGTT 1 cut(s) 557
AclWI GGATC 1 cut(s) 892
AcsI RAATTY 2 cut(s) 547, 1028
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 1169
AfaI GTAC 2 cut(s) 472, 534
AfiI CCNNNNNNNGG 4 cut(s) 92, 140, 800, 1213
AgsI TTSAA 6 cut(s) 487, 495, 552, 635, 685, 912
AjnI CCWGG 2 cut(s) 127, 1051
AluBI AGCT 6 cut(s) 27, 98, 170, 347, 368, 631
AluI AGCT 6 cut(s) 27, 98, 170, 347, 368, 631
Alw21I GWGCWC 3 cut(s) 100, 752, 967
Alw26I GTCTC 4 cut(s) 197, 259, 366, 848
Alw44I GTGCAC 2 cut(s) 748, 963
AlwI GGATC 1 cut(s) 892
AlwNI CAGNNNCTG 2 cut(s) 347, 368
AoxI GGCC 1 cut(s) 146
ApaLI GTGCAC 2 cut(s) 748, 963
ApeKI GCWGC 5 cut(s) 167, 602, 815, 818, 1160
ApoI RAATTY 2 cut(s) 547, 1028
AspLEI GCGC 2 cut(s) 167, 1144
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 329, 662
AsuII TTCGAA 1 cut(s) 878
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 3 cut(s) 642, 752, 967
BanII GRGCYC 2 cut(s) 100, 282
BbsI GAAGAC 1 cut(s) 963
Bbv12I GWGCWC 3 cut(s) 100, 752, 967
BbvI GCAGC 5 cut(s) 179, 614, 802, 805, 1147
BccI CCATC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BciT130I CCWGG 2 cut(s) 129, 1053
BciVI GTATCC 1 cut(s) 916
BclI TGATCA 4 cut(s) 241, 295, 1071, 1210
BcoDI GTCTC 4 cut(s) 197, 259, 366, 848
BfaI CTAG 2 cut(s) 311, 1154
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 5 cut(s) 168, 603, 816, 819, 1161
BlsI GCNGC 5 cut(s) 169, 604, 817, 820, 1162
Bme1390I CCNGG 2 cut(s) 129, 1053
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 180, 1205
BmrFI CCNGG 2 cut(s) 129, 1053
BmsI GCATC 6 cut(s) 94, 235, 368, 397, 589, 992
BpiI GAAGAC 1 cut(s) 963
BpmI CTGGAG 2 cut(s) 114, 390
Bpu10I CCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 878
BpuEI CTTGAG 2 cut(s) 283, 1115
BsaHI GRCGYC 1 cut(s) 1169
BsaJI CCNNGG 1 cut(s) 674
BsaXI ACNNNNNCTCC 4 cut(s) 463, 493, 1096, 1126
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 140, 800, 1213
Bse1I ACTGG 3 cut(s) 97, 861, 1170
BseBI CCWGG 2 cut(s) 129, 1053
BseDI CCNNGG 1 cut(s) 674
BseGI GGATG 7 cut(s) 109, 226, 457, 535, 604, 1048, 1172
BseLI CCNNNNNNNGG 4 cut(s) 92, 140, 800, 1213
BseMII CTCAG 2 cut(s) 113, 636
BseNI ACTGG 3 cut(s) 97, 861, 1170
BseRI GAGGAG 1 cut(s) 343
BseSI GKGCMC 3 cut(s) 642, 752, 967
BseXI GCAGC 5 cut(s) 179, 614, 802, 805, 1147
BseYI CCCAGC 3 cut(s) 282, 347, 918
BsgI GTGCAG 1 cut(s) 1146
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 3 cut(s) 100, 752, 967
BslFI GGGAC 1 cut(s) 1075
BslI CCNNNNNNNGG 4 cut(s) 92, 140, 800, 1213
BsmAI GTCTC 4 cut(s) 197, 259, 366, 848
BsmFI GGGAC 1 cut(s) 1075
BsnI GGCC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 878
Bsp1286I GDGCHC 5 cut(s) 100, 282, 642, 752, 967
Bsp143I GATC 5 cut(s) 241, 295, 884, 1071, 1210
BspACI CCGC 2 cut(s) 117, 990
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 112, 637
BspLI GGNNCC 2 cut(s) 180, 1205
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 892
BspT104I TTCGAA 1 cut(s) 878
BsrI ACTGG 3 cut(s) 97, 861, 1170
BssECI CCNNGG 1 cut(s) 674
BssMI GATC 5 cut(s) 241, 295, 884, 1071, 1210
BssNI GRCGYC 1 cut(s) 1169
BssT1I CCWWGG 1 cut(s) 674
Bst2UI CCWGG 2 cut(s) 129, 1053
Bst4CI ACNGT 6 cut(s) 377, 458, 537, 726, 962, 1135
BstACI GRCGYC 1 cut(s) 1169
BstBI TTCGAA 1 cut(s) 878
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 54, 99, 645, 744
BstF5I GGATG 7 cut(s) 109, 226, 457, 535, 604, 1048, 1172
BstHHI GCGC 2 cut(s) 167, 1144
BstKTI GATC 5 cut(s) 244, 298, 887, 1074, 1213
BstMAI GTCTC 4 cut(s) 197, 259, 366, 848
BstMBI GATC 5 cut(s) 241, 295, 884, 1071, 1210
BstMWI GCNNNNNNNGC 8 cut(s) 104, 176, 365, 637, 646, 996, 1150, 1166
BstNI CCWGG 2 cut(s) 129, 1053
BstNSI RCATGY 3 cut(s) 653, 760, 896
BstSCI CCNGG 2 cut(s) 127, 1051
BstSLI GKGCMC 3 cut(s) 642, 752, 967
BstV1I GCAGC 5 cut(s) 179, 614, 802, 805, 1147
BstV2I GAAGAC 1 cut(s) 963
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 1 cut(s) 1019
BstYI RGATCY 1 cut(s) 884
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 7 cut(s) 109, 226, 457, 535, 604, 1048, 1172
BtsIMutI CAGTG 5 cut(s) 463, 642, 666, 967, 1163
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 2 cut(s) 347, 368
CfoI GCGC 2 cut(s) 167, 1144
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 2 cut(s) 488, 1158
Csp6I GTAC 2 cut(s) 471, 533
CviAII CATG 7 cut(s) 650, 699, 757, 893, 1038, 1189, 1208
CviQI GTAC 2 cut(s) 471, 533
DdeI CTNAG 4 cut(s) 54, 99, 645, 744
DpnI GATC 5 cut(s) 243, 297, 886, 1073, 1212
DpnII GATC 5 cut(s) 241, 295, 884, 1071, 1210
DraI TTTAAA 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 674
Eco147I AGGCCT 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 100, 282
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 127, 1051
EcoT14I CCWWGG 1 cut(s) 674
EcoT22I ATGCAT 1 cut(s) 1001
EcoT38I GRGCYC 2 cut(s) 100, 282
ErhI CCWWGG 1 cut(s) 674
FaeI CATG 7 cut(s) 653, 702, 760, 896, 1041, 1192, 1211
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 891, 923
FaqI GGGAC 1 cut(s) 1075
FatI CATG 7 cut(s) 649, 698, 756, 892, 1037, 1188, 1207
FbaI TGATCA 4 cut(s) 241, 295, 1071, 1210
Fnu4HI GCNGC 5 cut(s) 168, 603, 816, 819, 1161
FokI GGATG 7 cut(s) 116, 213, 464, 542, 611, 1035, 1159
FriOI GRGCYC 2 cut(s) 100, 282
Fsp4HI GCNGC 5 cut(s) 168, 603, 816, 819, 1161
FspBI CTAG 2 cut(s) 311, 1154
GlaI GCGC 2 cut(s) 166, 1143
GluI GCNGC 5 cut(s) 168, 603, 816, 819, 1161
GsaI CCCAGC 3 cut(s) 286, 351, 922
GsuI CTGGAG 2 cut(s) 114, 390
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 2 cut(s) 488, 1158
HhaI GCGC 2 cut(s) 167, 1144
Hin1I GRCGYC 1 cut(s) 1169
Hin1II CATG 7 cut(s) 653, 702, 760, 896, 1041, 1192, 1211
Hin6I GCGC 2 cut(s) 165, 1142
HinP1I GCGC 2 cut(s) 165, 1142
HincII GTYRAC 2 cut(s) 736, 978
HindII GTYRAC 2 cut(s) 736, 978
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 6 cut(s) 338, 431, 617, 786, 1088, 1105
HphI GGTGA 2 cut(s) 329, 662
Hpy166II GTNNAC 4 cut(s) 736, 750, 965, 978
Hpy188I TCNGA 3 cut(s) 246, 722, 785
Hpy188III TCNNGA 7 cut(s) 101, 262, 342, 363, 825, 888, 1069
Hpy8I GTNNAC 4 cut(s) 736, 750, 965, 978
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 3 cut(s) 138, 629, 874
HpyCH4III ACNGT 6 cut(s) 377, 458, 537, 726, 962, 1135
HpyCH4IV ACGT 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 176, 365, 637, 646, 996, 1150, 1166
HpyF3I CTNAG 4 cut(s) 54, 99, 645, 744
HpySE526I ACGT 1 cut(s) 557
Hsp92I GRCGYC 1 cut(s) 1169
Hsp92II CATG 7 cut(s) 653, 702, 760, 896, 1041, 1192, 1211
HspAI GCGC 2 cut(s) 165, 1142
Ksp22I TGATCA 4 cut(s) 241, 295, 1071, 1210
Kzo9I GATC 5 cut(s) 241, 295, 884, 1071, 1210
LmnI GCTCC 6 cut(s) 95, 184, 344, 365, 767, 1203
Lsp1109I GCAGC 5 cut(s) 179, 614, 802, 805, 1147
LweI GCATC 6 cut(s) 94, 235, 368, 397, 589, 992
MaeI CTAG 2 cut(s) 311, 1154
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 4 cut(s) 306, 317, 707, 1082
MalI GATC 5 cut(s) 243, 297, 886, 1073, 1212
MboI GATC 5 cut(s) 241, 295, 884, 1071, 1210
MboII GAAGA 5 cut(s) 416, 431, 561, 601, 968
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 5 cut(s) 100, 282, 642, 752, 967
MluCI AATT 5 cut(s) 138, 270, 547, 912, 1028
MlyI GAGTC 3 cut(s) 440, 1097, 1114
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 9 cut(s) 269, 307, 321, 324, 345, 442, 804, 955, 1207
Mph1103I ATGCAT 1 cut(s) 1001
MseI TTAA 3 cut(s) 123, 152, 762
MslI CAYNNNNRTG 2 cut(s) 755, 1017
MspR9I CCNGG 2 cut(s) 129, 1053
MvaI CCWGG 2 cut(s) 129, 1053
MwoI GCNNNNNNNGC 8 cut(s) 104, 176, 365, 637, 646, 996, 1150, 1166
NdeII GATC 5 cut(s) 241, 295, 884, 1071, 1210
NlaIII CATG 7 cut(s) 653, 702, 760, 896, 1041, 1192, 1211
NlaIV GGNNCC 2 cut(s) 180, 1205
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 1001
NspI RCATGY 3 cut(s) 653, 760, 896
NspV TTCGAA 1 cut(s) 878
PceI AGGCCT 1 cut(s) 148
PfeI GAWTC 3 cut(s) 338, 617, 786
PflMI CCANNNNNTGG 2 cut(s) 92, 140
PfoI TCCNGGA 1 cut(s) 1051
PkrI GCNGC 5 cut(s) 169, 604, 817, 820, 1162
PleI GAGTC 3 cut(s) 439, 1096, 1113
PpsI GAGTC 3 cut(s) 439, 1096, 1113
Psp124BI GAGCTC 1 cut(s) 100
Psp1406I AACGTT 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 127, 1051
PspFI CCCAGC 3 cut(s) 282, 347, 918
PspGI CCWGG 2 cut(s) 127, 1051
PspN4I GGNNCC 2 cut(s) 180, 1205
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 2 cut(s) 347, 368
PsuI RGATCY 1 cut(s) 884
RsaI GTAC 2 cut(s) 472, 534
RsaNI GTAC 2 cut(s) 471, 533
RseI CAYNNNNRTG 2 cut(s) 755, 1017
SacI GAGCTC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 123, 152, 762
SatI GCNGC 5 cut(s) 168, 603, 816, 819, 1161
Sau3AI GATC 5 cut(s) 241, 295, 884, 1071, 1210
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 3 cut(s) 440, 1097, 1114
ScrFI CCNGG 2 cut(s) 129, 1053
SduI GDGCHC 5 cut(s) 100, 282, 642, 752, 967
SfaNI GCATC 6 cut(s) 94, 235, 368, 397, 589, 992
SfuI TTCGAA 1 cut(s) 878
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 755, 1017
SmlI CTYRAG 2 cut(s) 262, 1094
SmoI CTYRAG 2 cut(s) 262, 1094
Sse9I AATT 5 cut(s) 138, 270, 547, 912, 1028
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 2 cut(s) 117, 990
SspI AATATT 1 cut(s) 809
SspMI CTAG 2 cut(s) 311, 1154
SstI GAGCTC 1 cut(s) 100
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 127, 1051
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 6 cut(s) 377, 458, 537, 726, 962, 1135
TaiI ACGT 1 cut(s) 560
TaqI TCGA 3 cut(s) 796, 867, 878
TasI AATT 5 cut(s) 138, 270, 547, 912, 1028
TfiI GAWTC 3 cut(s) 338, 617, 786
Tru1I TTAA 3 cut(s) 123, 152, 762
Tru9I TTAA 3 cut(s) 123, 152, 762
TscAI CASTG 5 cut(s) 463, 649, 666, 967, 1170
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 5 cut(s) 167, 602, 815, 818, 1160
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 5 cut(s) 417, 684, 729, 1020, 1037
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 5 cut(s) 463, 649, 666, 967, 1170
Van91I CCANNNNNTGG 2 cut(s) 92, 140
VneI GTGCAC 2 cut(s) 748, 963
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 2 cut(s) 547, 1028
XceI RCATGY 3 cut(s) 653, 760, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XspI CTAG 2 cut(s) 311, 1154
Zsp2I ATGCAT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.