Rorug04G0438200

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012593
Physical Location & Seq
Reverse (-)
59553823 .. 59560661
6839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0438200.1

Sequence Viewer

Length: 723 bp
ATGGCGCCTTACTTGAAAATTTTCACCTATGAACGATTGGATCGGTTAAAAAGAACTGCCATCTTCACTGAATGTGAAGTGGGAATGTGTACGTCTTTATTGGCGTCCGAGGCTTTCCGCGTGGCTCTGTTTCCTTGCTCCACGAAGAGAGAACAATCAAAGAGAAATCAAGAACGATCGAGGACTCGAGTCCAGCTGTCGTCTGCGCATCTGGAGATTCTTGGGTGTGTGGCTGATTTGGGCGAAGAGAAGGAGGGTGATTTTGGAGGAAACGGGAGAGGACTATTGATTTTGATTCTGCATGTTGGGTCTCTGCAACCTGCTTATGAACGATTAATTGATCAATTGTGTTTGCTTGATGTGTCTGCGGTTCAATCAATTGTGGTTGTGATTCCTGCAGTTAGTGCTTCTAAGGTTTCAACTGCTACTGTTACTTTTGCTGCAGCTCCTGTTGTTGGTGCAACTGATTTAGTTGTTGTGAGATTAGTCTGCAGTTGTTTGCTTTTGATTCGTCATCAGCAAAGAATAGATTCGGCGAAGAGGACCTTTGCTTCAATTTTAAGGCTTGCAATAGATTCTATGCGAAAGAGTTTACGCGTCATTCTGCTGCCACTGTTCCTTTGTCTATTGGTTAATACTATCTTGATTTGTTACTCTTATTCAGATTCTGGGAACAGTGTGCTGGCAAATTGTTTAACCGTTTTAAATTCAGAGTATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

240

Amino Acids

26.31

Weight (kDa)

8.7

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 120, 597
AciI CCGC 2 cut(s) 118, 368
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 18, 706
AcyI GRCGYC 2 cut(s) 5, 104
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 4 cut(s) 16, 374, 420, 555
AluBI AGCT 2 cut(s) 196, 446
AluI AGCT 2 cut(s) 196, 446
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 2 cut(s) 449, 668
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 440, 443, 607
ApoI RAATTY 2 cut(s) 18, 706
AseI ATTAAT 1 cut(s) 335
Asp700I GAANNNNTTC 2 cut(s) 20, 529
AspLEI GCGC 2 cut(s) 7, 208
AspS9I GGNCC 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 16, 269
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 543
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 427, 455, 594
BccI CCATC 1 cut(s) 68
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 315
BfmI CTRYAG 3 cut(s) 396, 441, 490
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 3 cut(s) 441, 444, 608
BlsI GCNGC 3 cut(s) 442, 445, 609
Bme18I GGWCC 1 cut(s) 543
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 217
BoxI GACNNNNGTC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 233
BsaHI GRCGYC 2 cut(s) 5, 104
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 455
BseXI GCAGC 3 cut(s) 427, 455, 594
Bsh1236I CGCG 2 cut(s) 120, 597
Bsh1285I CGRYCG 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 315
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 3 cut(s) 40, 176, 340
BspACI CCGC 2 cut(s) 118, 368
BspFNI CGCG 2 cut(s) 120, 597
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 3 cut(s) 400, 445, 494
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 40, 176, 340
BssNI GRCGYC 2 cut(s) 5, 104
Bst4CI ACNGT 4 cut(s) 430, 615, 677, 700
Bst6I CTCTTC 3 cut(s) 140, 240, 533
BstACI GRCGYC 2 cut(s) 5, 104
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 567, 684
BstDEI CTNAG 1 cut(s) 411
BstFNI CGCG 2 cut(s) 120, 597
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 208
BstKTI GATC 3 cut(s) 43, 179, 343
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 3 cut(s) 40, 176, 340
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 110, 404
BstNSI RCATGY 1 cut(s) 305
BstPAI GACNNNNGTC 1 cut(s) 188
BstSFI CTRYAG 3 cut(s) 396, 441, 490
BstUI CGCG 2 cut(s) 120, 597
BstV1I GCAGC 3 cut(s) 427, 455, 594
BtsIMutI CAGTG 3 cut(s) 66, 611, 682
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 567, 684
CaiI CAGNNNCTG 2 cut(s) 449, 668
CfoI GCGC 2 cut(s) 7, 208
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 2 cut(s) 93, 586
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 302
CviJI RGCY 6 cut(s) 113, 125, 196, 233, 446, 565
CviKI_1 RGCY 6 cut(s) 113, 125, 196, 233, 446, 565
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 411
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 42, 178, 342
DpnII GATC 3 cut(s) 40, 176, 340
DraI TTTAAA 1 cut(s) 705
Eam1104I CTCTTC 3 cut(s) 140, 240, 533
EarI CTCTTC 3 cut(s) 140, 240, 533
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 543
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 30, 303, 327, 581, 717
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 441, 444, 608
Fsp4HI GCNGC 3 cut(s) 441, 444, 608
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 2 cut(s) 6, 207
GluI GCNGC 3 cut(s) 441, 444, 608
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 2 cut(s) 93, 586
HhaI GCGC 2 cut(s) 7, 208
Hin1I GRCGYC 2 cut(s) 5, 104
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 2 cut(s) 5, 206
HinP1I GCGC 2 cut(s) 5, 206
HinfI GANTC 9 cut(s) 184, 189, 217, 295, 391, 508, 530, 575, 665
HphI GGTGA 2 cut(s) 16, 269
Hpy166II GTNNAC 2 cut(s) 90, 593
Hpy188I TCNGA 3 cut(s) 109, 664, 712
Hpy188III TCNNGA 3 cut(s) 170, 212, 643
Hpy8I GTNNAC 2 cut(s) 90, 593
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 4 cut(s) 430, 615, 677, 700
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 301, 316, 398, 443, 461, 492, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 404
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 2 cut(s) 5, 104
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 2 cut(s) 5, 206
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 40, 176, 340
LmnI GCTCC 2 cut(s) 143, 451
LpnPI CCDG 7 cut(s) 197, 206, 333, 408, 462, 654, 668
Lsp1109I GCAGC 3 cut(s) 427, 455, 594
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 430, 650
MalI GATC 3 cut(s) 42, 178, 342
MboI GATC 3 cut(s) 40, 176, 340
MboII GAAGA 4 cut(s) 55, 157, 257, 550
MfeI CAATTG 2 cut(s) 344, 378
MluCI AATT 7 cut(s) 18, 336, 344, 378, 555, 688, 706
MluI ACGCGT 1 cut(s) 595
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 178, 198
MnlI CCTC 6 cut(s) 103, 174, 247, 260, 272, 534
MroXI GAANNNNTTC 2 cut(s) 20, 529
MseI TTAA 6 cut(s) 47, 335, 560, 633, 695, 704
MspA1I CMGCKG 1 cut(s) 196
MunI CAATTG 2 cut(s) 344, 378
MvnI CGCG 2 cut(s) 120, 597
MwoI GCNNNNNNNGC 2 cut(s) 110, 404
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 40, 176, 340
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 20, 529
PfeI GAWTC 7 cut(s) 217, 295, 391, 508, 530, 575, 665
PkrI GCNGC 3 cut(s) 442, 445, 609
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 2 cut(s) 178, 197
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 178, 197
PpuMI RGGWCCY 1 cut(s) 543
PshAI GACNNNNGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 543
PspPPI RGGWCCY 1 cut(s) 543
PspXI VCTCGAGB 1 cut(s) 186
PstI CTGCAG 3 cut(s) 400, 445, 494
PstNI CAGNNNCTG 2 cut(s) 449, 668
PvuI CGATCG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 6 cut(s) 47, 335, 560, 633, 695, 704
SatI GCNGC 3 cut(s) 441, 444, 608
Sau3AI GATC 3 cut(s) 40, 176, 340
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 2 cut(s) 178, 198
SetI ASST 7 cut(s) 29, 95, 198, 322, 417, 448, 548
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 3 cut(s) 396, 441, 490
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 543
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 7 cut(s) 18, 336, 344, 378, 555, 688, 706
SsiI CCGC 2 cut(s) 118, 368
SspDI GGCGCC 1 cut(s) 4
TaaI ACNGT 4 cut(s) 430, 615, 677, 700
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 179, 187
TasI AATT 7 cut(s) 18, 336, 344, 378, 555, 688, 706
TfiI GAWTC 7 cut(s) 217, 295, 391, 508, 530, 575, 665
Tru1I TTAA 6 cut(s) 47, 335, 560, 633, 695, 704
Tru9I TTAA 6 cut(s) 47, 335, 560, 633, 695, 704
TscAI CASTG 3 cut(s) 73, 618, 682
TseI GCWGC 3 cut(s) 440, 443, 607
TspDTI ATGAA 2 cut(s) 45, 342
TspRI CASTG 3 cut(s) 73, 618, 682
VpaK11BI GGWCC 1 cut(s) 543
VspI ATTAAT 1 cut(s) 335
XapI RAATTY 2 cut(s) 18, 706
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 186
XmnI GAANNNNTTC 2 cut(s) 20, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.