Rh5AG066900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012593
Physical Location & Seq
Forward (+)
5602708 .. 5608520
5813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG066900.1

Sequence Viewer

Length: 1962 bp
ATGGCCAATTCTTCGGACCGTGTTGACTTCTGGGATGCTGAAAAGATGCTTGATCTTTATCTGCACGATTATATGGTGAAGAAGAATATGCACTCCACTGCTGAAATCTTCAGGAGAGAAGCTGATGTCTATTCTGAAAGTCCTGTTGTTATTGATACCAAGGAGGGGTTCTTAAATGAATGGTGGACTTTGTTTTATGATGTGTACTCGTCTAGGACACAATTGAAGCATCAAGATCAGGCCAAGGTTGAAGCACCGGTTCAGGAAAGGAGAGAGAATGAGCAGCAACGTAAACATCCAAGAGTGCCTGAAGATTTACCAAGAGTGCCTACTGCACCTTTAGCAACCAAGCAAAAGAGGTCTCGACGAGCGCCTAGGACCAGGAGTATTGACTACTTTAGTAAGTGGTTGGGGATACCAGGTGGAGATTTTGGTCCCAATTTGCATCCGCTTCGTGTCAATGATCTGAATATCTCAAAGTCACTTGCAACCAGTTCAAGCCCTCTGCATCAGCAACTCCTCAAGAATATTGCTCAAATGCAGGTGCAGGACAACAGAAATGTCATTAGCTTCGGCAGGACTAACAACATTGGCTCTAAGGTTTTTGGACTGCATAGCTCCTTACTCCCACTAACTGGAGCTCAGGATGCAGGTATAAGCGGAGTTAAACCTGGACCACAAATTGGAAGGCCTTTAAAAGTAGTAAGCGCAGCTTTGCAGGCTCCAAACCACCAACAACTGATTGAGACGTCAACAACAGAACATCAGCATCCACCTTTGAGTGATCAGATGGTGGGTCGCCTCTTGAGACAAATTGCAGAGCCCCAGCAACAACCTGATCAACAGCAGTTACTAGAGGGTGACAGAGAGAGGAGGACAGAATCAGGAGCTGGGAGGACAGCATCAGGAGCTGGAGACAGTCATTTGGAAAATAGGAGTGCTAATGAAGATCCCCCTGTGGAAGAAAATACCGAGTCTTTCTTGTCCTATGAGGATGACAATGCTGGTGGTGGTACAAGCACTCCATTCAAGGCTTCAAAGCGTCGTGGTGGGAAAAAAAAGCACGAAAGGGGCTTCAAGTTCGAAGAAATTTGTTCTCTCCATTCAAGCATGGCTAAGGTTATATGCTGCCATTTTTCATCAAATGGGACGTTGTTAGCAAGTGCAGGGCATGAAAAAAAGCAGGTTCTGATTTGGAACATGGAAACTTTTGATGTTGTTAAAACTTTCGAAGAGCATTCTCATCTCATTACAGATGTACGGTTTAGACCAAATTCAACAACGTTTGCAACATCTTCGTTTGATAGAAATGTGAAGATATGGGATGCAGCCAGACCAAGTGAATCAATATCCAAGCTTGAAGGGCACACTGAGCATGTAATGTCAGTGGATTTTCACCCAAGGAAGTTCAATCTCCTTTCATCATGCGATAGTAACGATGAAATCCGACTGTGGAATGTCAACCAATCTAAGTGCACAAGCATGTTTAAGGGAGCAACTAAACAAGTCAGATTCCAGCCTCGATTTGGAAAATATTTGGCTGCTGCTTCAGGAAATAGTGTCAATACTTTTGATGTTGAGACTGCCAGTTTCGACTTGTATTCGAAGGGATCTGGACATGCCAAAGATGTCCTTTCAATTTGCTGGGATACAAGTGGGAAGTATCTTGCCTCTGTTAGTGAAGACAGTGCACGGATTTGGTCAACTGCATCAAGCGGAAAATGCATATATGAACTCCACTCAAATGGCAACAAATTCCAATCATGCACATTTCATCCTGGATATTCACTACTCTTGATCATTGGTTGTTACGAGTCCCTTGAGTTGTGGAGTCCAAGTGAGAGCAATAAAACTATGACTGTTCCAGCGCACAAGGGGCTAGTTGCTGCACTGGCGTCATCCCCAAAGACTGACATGGTTGCCTCTGGGAGCCATGATCAGGTCGTCAAACTATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

653

Amino Acids

72.98

Weight (kDa)

8.22

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 355 - 497 5.1e-09 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 360 - 564 3.4e-12 MABP1/WDR62 second WD40 domain
EIF3I PF24805 360 - 444 1e-07 EIF3I
Beta-prop_THOC3 PF25174 361 - 430 3.5e-07 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 362 - 503 1.1e-21 WDR3 first beta-propeller domain
WDR55 PF24796 362 - 493 1.8e-07 WDR55
WD40_CDC20-Fz PF24807 364 - 496 9.3e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 365 - 487 1.5e-14 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 370 - 503 2.2e-27 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 370 - 467 4.1e-08 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 370 - 442 2e-10 Prp19 WD40 domain
WD40_Gbeta PF25391 370 - 472 4.9e-06 G protein beta WD-40 repeat protein
Beta-prop_EML PF23409 371 - 500 7.6e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 371 - 491 7.7e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT122_1st PF23381 383 - 555 7.9e-06 IFT122 first beta-propeller
Beta-prop_TEP1_2nd PF25047 403 - 501 3.2e-06 TEP-1 second beta-propeller
WD40 PF00400 406 - 442 8.9e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 413 - 503 5e-16 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 416 - 570 1.1e-07 Aladin seven-bladed propeller
WD40_WDHD1_1st PF24817 417 - 594 3.5e-19 WDHD1 first WD40 domain
WD40_Prp19 PF24814 448 - 527 1.6e-06 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 459 - 601 3.4e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 480 - 653 3.1e-18 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 481 - 652 1.6e-16 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 499 - 576 4.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 499 - 652 2e-21 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 501 - 652 6.4e-17 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 511 - 649 8.6e-06 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 543 - 653 2.9e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AatII GACGTC 1 cut(s) 752
Acc36I ACCTGC 3 cut(s) 532, 641, 1174
AccB7I CCANNNNNTGG 2 cut(s) 635, 683
AciI CCGC 3 cut(s) 449, 660, 1716
AclI AACGTT 1 cut(s) 1283
AclWI GGATC 2 cut(s) 944, 1618
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 1089, 1273, 1754
AcuI CTGAAG 3 cut(s) 94, 330, 1533
AcyI GRCGYC 2 cut(s) 749, 1895
AfaI GTAC 3 cut(s) 206, 1015, 1260
AfiI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1526, 1939
AgeI ACCGGT 1 cut(s) 256
AjnI CCWGG 4 cut(s) 380, 418, 670, 1777
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 8 cut(s) 122, 570, 618, 641, 713, 890, 911, 1357
AluI AGCT 8 cut(s) 122, 570, 618, 641, 713, 890, 911, 1357
Alw21I GWGCWC 3 cut(s) 643, 1478, 1693
Alw26I GTCTC 5 cut(s) 366, 740, 802, 909, 1574
Alw44I GTGCAC 2 cut(s) 1474, 1689
AlwI GGATC 2 cut(s) 944, 1618
AlwNI CAGNNNCTG 3 cut(s) 890, 911, 1189
AoxI GGCC 3 cut(s) 3, 240, 689
ApaLI GTGCAC 2 cut(s) 1474, 1689
ApeKI GCWGC 7 cut(s) 283, 710, 1128, 1328, 1541, 1544, 1886
ApoI RAATTY 3 cut(s) 1089, 1273, 1754
AsiGI ACCGGT 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 3 cut(s) 373, 710, 1870
AspS9I GGNCC 4 cut(s) 16, 378, 434, 674
AsuHPI GGTGA 3 cut(s) 88, 872, 1388
AsuII TTCGAA 3 cut(s) 1083, 1230, 1604
AvaII GGWCC 4 cut(s) 16, 378, 434, 674
AvrII CCTAGG 1 cut(s) 374
BaeGI GKGCMC 3 cut(s) 1368, 1478, 1693
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 643, 825
BbsI GAAGAC 1 cut(s) 1689
Bbv12I GWGCWC 3 cut(s) 643, 1478, 1693
BbvI GCAGC 7 cut(s) 295, 722, 1115, 1340, 1528, 1531, 1873
BccI CCATC 1 cut(s) 784
BcgI CGANNNNNNTGC 4 cut(s) 434, 468, 1278, 1312
BciT130I CCWGG 4 cut(s) 382, 420, 672, 1779
BciVI GTATCC 2 cut(s) 408, 1642
BclI TGATCA 4 cut(s) 784, 838, 1797, 1936
BcoDI GTCTC 5 cut(s) 366, 740, 802, 909, 1574
BfaI CTAG 4 cut(s) 213, 375, 854, 1880
BfoI RGCGCY 1 cut(s) 374
BfuAI ACCTGC 3 cut(s) 532, 641, 1174
BfuI GTATCC 2 cut(s) 408, 1642
BisI GCNGC 7 cut(s) 284, 711, 1129, 1329, 1542, 1545, 1887
BlnI CCTAGG 1 cut(s) 374
BlsI GCNGC 7 cut(s) 285, 712, 1130, 1330, 1543, 1546, 1888
Bme1390I CCNGG 4 cut(s) 382, 420, 672, 1779
Bme18I GGWCC 4 cut(s) 16, 378, 434, 674
BmgT120I GGNCC 4 cut(s) 16, 378, 434, 674
BmiI GGNNCC 3 cut(s) 436, 723, 1931
BmrFI CCNGG 4 cut(s) 382, 420, 672, 1779
BpiI GAAGAC 1 cut(s) 1689
BpmI CTGGAG 2 cut(s) 657, 933
Bpu10I CCTNAGC 2 cut(s) 642, 1116
Bpu14I TTCGAA 3 cut(s) 1083, 1230, 1604
BpuEI CTTGAG 3 cut(s) 506, 826, 1841
BsaBI GATNNNNATC 1 cut(s) 57
BsaHI GRCGYC 2 cut(s) 749, 1895
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 4 cut(s) 159, 243, 374, 1400
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 1006, 1036, 1822, 1852
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1526, 1939
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 4 cut(s) 492, 640, 1587, 1896
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 4 cut(s) 382, 420, 672, 1779
BseDI CCNNGG 4 cut(s) 159, 243, 374, 1400
BseGI GGATG 9 cut(s) 40, 295, 445, 652, 769, 1000, 1330, 1774, 1898
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1526, 1939
BseMII CTCAG 2 cut(s) 656, 1362
BseNI ACTGG 4 cut(s) 492, 640, 1587, 1896
BseRI GAGGAG 2 cut(s) 509, 886
BseSI GKGCMC 3 cut(s) 1368, 1478, 1693
BseXI GCAGC 7 cut(s) 295, 722, 1115, 1340, 1528, 1531, 1873
BseYI CCCAGC 3 cut(s) 825, 890, 1644
BsgI GTGCAG 5 cut(s) 47, 318, 566, 1185, 1872
BshFI GGCC 3 cut(s) 5, 242, 691
BshTI ACCGGT 1 cut(s) 256
BsiHKAI GWGCWC 3 cut(s) 643, 1478, 1693
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 3 cut(s) 420, 1162, 1801
BslI CCNNNNNNNGG 5 cut(s) 165, 635, 683, 1526, 1939
BsmAI GTCTC 5 cut(s) 366, 740, 802, 909, 1574
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 3 cut(s) 420, 1162, 1801
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 3 cut(s) 5, 242, 691
Bso31I GGTCTC 1 cut(s) 366
Bsp119I TTCGAA 3 cut(s) 1083, 1230, 1604
Bsp1286I GDGCHC 5 cut(s) 643, 825, 1368, 1478, 1693
Bsp143I GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
BspACI CCGC 3 cut(s) 449, 660, 1716
BspANI GGCC 3 cut(s) 5, 242, 691
BspCNI CTCAG 2 cut(s) 655, 1363
BspLI GGNNCC 3 cut(s) 436, 723, 1931
BspMI ACCTGC 3 cut(s) 532, 641, 1174
BspPI GGATC 2 cut(s) 944, 1618
BspQI GCTCTTC 1 cut(s) 1227
BspT104I TTCGAA 3 cut(s) 1083, 1230, 1604
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 4 cut(s) 492, 640, 1587, 1896
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 4 cut(s) 159, 243, 374, 1400
BssMI GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
BssNI GRCGYC 2 cut(s) 749, 1895
BssT1I CCWWGG 4 cut(s) 159, 243, 374, 1400
Bst2UI CCWGG 4 cut(s) 382, 420, 672, 1779
Bst4CI ACNGT 6 cut(s) 20, 920, 1263, 1452, 1688, 1861
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 2 cut(s) 749, 1895
BstBI TTCGAA 3 cut(s) 1083, 1230, 1604
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 5 cut(s) 597, 642, 1116, 1371, 1470
BstF5I GGATG 9 cut(s) 40, 295, 445, 652, 769, 1000, 1330, 1774, 1898
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 3 cut(s) 373, 710, 1870
BstKTI GATC 9 cut(s) 55, 238, 466, 787, 841, 952, 1613, 1800, 1939
BstMAI GTCTC 5 cut(s) 366, 740, 802, 909, 1574
BstMBI GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
BstMWI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 908, 1363, 1372, 1722, 1876, 1892
BstNI CCWGG 4 cut(s) 382, 420, 672, 1779
BstNSI RCATGY 3 cut(s) 1379, 1486, 1622
BstSCI CCNGG 4 cut(s) 380, 418, 670, 1777
BstSLI GKGCMC 3 cut(s) 1368, 1478, 1693
BstV1I GCAGC 7 cut(s) 295, 722, 1115, 1340, 1528, 1531, 1873
BstV2I GAAGAC 1 cut(s) 1689
BstX2I RGATCY 2 cut(s) 949, 1610
BstXI CCANNNNNNTGG 1 cut(s) 1745
BstYI RGATCY 2 cut(s) 949, 1610
BsuI GTATCC 2 cut(s) 408, 1642
BsuRI GGCC 3 cut(s) 5, 242, 691
BtsCI GGATG 9 cut(s) 40, 295, 445, 652, 769, 1000, 1330, 1774, 1898
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 5 cut(s) 96, 1368, 1392, 1693, 1889
BveI ACCTGC 3 cut(s) 532, 641, 1174
Cac8I GCNNGC 1 cut(s) 720
CaiI CAGNNNCTG 3 cut(s) 890, 911, 1189
CfoI GCGC 3 cut(s) 373, 710, 1870
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 4 cut(s) 16, 378, 434, 674
CpoI CGGWCCG 1 cut(s) 16
CseI GACGC 2 cut(s) 1031, 1884
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 3 cut(s) 205, 1014, 1259
CspAI ACCGGT 1 cut(s) 256
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CspI CGGWCCG 1 cut(s) 16
CviQI GTAC 3 cut(s) 205, 1014, 1259
DdeI CTNAG 5 cut(s) 597, 642, 1116, 1371, 1470
DpnI GATC 9 cut(s) 54, 237, 465, 786, 840, 951, 1612, 1799, 1938
DpnII GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
DraI TTTAAA 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1227
EarI CTCTTC 1 cut(s) 1227
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 4 cut(s) 159, 243, 374, 1400
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 643, 825
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 4 cut(s) 16, 378, 434, 674
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 3 cut(s) 94, 330, 1533
EcoICRI GAGCTC 1 cut(s) 641
EcoRII CCWGG 4 cut(s) 380, 418, 670, 1777
EcoT14I CCWWGG 4 cut(s) 159, 243, 374, 1400
EcoT22I ATGCAT 1 cut(s) 1727
EcoT38I GRGCYC 2 cut(s) 643, 825
ErhI CCWWGG 4 cut(s) 159, 243, 374, 1400
Esp3I CGTCTC 1 cut(s) 740
FalI AAGNNNNNCTT 4 cut(s) 697, 729, 1617, 1649
FaqI GGGAC 3 cut(s) 420, 1162, 1801
FbaI TGATCA 4 cut(s) 784, 838, 1797, 1936
Fnu4HI GCNGC 7 cut(s) 284, 711, 1129, 1329, 1542, 1545, 1887
FokI GGATG 9 cut(s) 47, 282, 432, 659, 756, 1007, 1337, 1761, 1885
FriOI GRGCYC 2 cut(s) 643, 825
Fsp4HI GCNGC 7 cut(s) 284, 711, 1129, 1329, 1542, 1545, 1887
FspBI CTAG 4 cut(s) 213, 375, 854, 1880
GlaI GCGC 3 cut(s) 372, 709, 1869
GluI GCNGC 7 cut(s) 284, 711, 1129, 1329, 1542, 1545, 1887
GsaI CCCAGC 3 cut(s) 829, 894, 1648
GsuI CTGGAG 2 cut(s) 657, 933
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 3 cut(s) 5, 242, 691
HapII CCGG 1 cut(s) 257
HgaI GACGC 2 cut(s) 1031, 1884
HhaI GCGC 3 cut(s) 373, 710, 1870
Hin1I GRCGYC 2 cut(s) 749, 1895
Hin6I GCGC 3 cut(s) 371, 708, 1868
HinP1I GCGC 3 cut(s) 371, 708, 1868
HincII GTYRAC 4 cut(s) 25, 753, 1462, 1704
HindII GTYRAC 4 cut(s) 25, 753, 1462, 1704
HindIII AAGCTT 1 cut(s) 1355
HinfI GANTC 6 cut(s) 881, 974, 1343, 1512, 1814, 1831
HpaII CCGG 1 cut(s) 257
HphI GGTGA 3 cut(s) 88, 872, 1388
Hpy166II GTNNAC 9 cut(s) 25, 186, 205, 293, 753, 1462, 1476, 1691, 1704
Hpy188I TCNGA 7 cut(s) 16, 136, 468, 789, 1191, 1448, 1511
Hpy8I GTNNAC 9 cut(s) 25, 186, 205, 293, 753, 1462, 1476, 1691, 1704
Hpy99I CGWCG 2 cut(s) 369, 1047
HpyAV CCTTC 3 cut(s) 681, 1355, 1600
HpyCH4III ACNGT 6 cut(s) 20, 920, 1263, 1452, 1688, 1861
HpyCH4IV ACGT 4 cut(s) 289, 749, 1151, 1283
HpyF10VI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 908, 1363, 1372, 1722, 1876, 1892
HpyF3I CTNAG 5 cut(s) 597, 642, 1116, 1371, 1470
HpySE526I ACGT 4 cut(s) 289, 749, 1151, 1283
Hsp92I GRCGYC 2 cut(s) 749, 1895
HspAI GCGC 3 cut(s) 371, 708, 1868
Ksp22I TGATCA 4 cut(s) 784, 838, 1797, 1936
Kzo9I GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 7 cut(s) 623, 638, 727, 887, 908, 1493, 1929
Lsp1109I GCAGC 7 cut(s) 295, 722, 1115, 1340, 1528, 1531, 1873
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 4 cut(s) 213, 375, 854, 1880
MaeII ACGT 4 cut(s) 289, 749, 1151, 1283
MaeIII GTNAC 5 cut(s) 480, 849, 860, 1433, 1808
MalI GATC 9 cut(s) 54, 237, 465, 786, 840, 951, 1612, 1799, 1938
MboI GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 2 cut(s) 949, 1610
MhlI GDGCHC 5 cut(s) 643, 825, 1368, 1478, 1693
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 7, 221, 439, 681, 813, 1089, 1273, 1638, 1754
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 983, 1823, 1840
MmeI TCCRAC 1 cut(s) 1471
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1727
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 173, 666, 695, 1221, 1488
MslI CAYNNNNRTG 2 cut(s) 1481, 1743
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 4 cut(s) 382, 420, 672, 1779
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 4 cut(s) 382, 420, 672, 1779
MwoI GCNNNNNNNGC 9 cut(s) 341, 647, 719, 908, 1363, 1372, 1722, 1876, 1892
NdeII GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
NlaIV GGNNCC 3 cut(s) 436, 723, 1931
NmuCI GTSAC 2 cut(s) 480, 860
NsiI ATGCAT 1 cut(s) 1727
NspI RCATGY 3 cut(s) 1379, 1486, 1622
NspV TTCGAA 3 cut(s) 1083, 1230, 1604
PaqCI CACCTGC 1 cut(s) 532
PceI AGGCCT 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 1227
PctI GAATGC 1 cut(s) 1237
PfeI GAWTC 3 cut(s) 881, 1343, 1512
PflMI CCANNNNNTGG 2 cut(s) 635, 683
PfoI TCCNGGA 1 cut(s) 1777
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 7 cut(s) 285, 712, 1130, 1330, 1543, 1546, 1888
PleI GAGTC 3 cut(s) 982, 1822, 1839
PpsI GAGTC 3 cut(s) 982, 1822, 1839
Psp124BI GAGCTC 1 cut(s) 643
Psp1406I AACGTT 1 cut(s) 1283
Psp6I CCWGG 4 cut(s) 380, 418, 670, 1777
PspFI CCCAGC 3 cut(s) 825, 890, 1644
PspGI CCWGG 4 cut(s) 380, 418, 670, 1777
PspN4I GGNNCC 3 cut(s) 436, 723, 1931
PspPI GGNCC 4 cut(s) 16, 378, 434, 674
PstNI CAGNNNCTG 3 cut(s) 890, 911, 1189
PsuI RGATCY 2 cut(s) 949, 1610
RsaI GTAC 3 cut(s) 206, 1015, 1260
RsaNI GTAC 3 cut(s) 205, 1014, 1259
RseI CAYNNNNRTG 2 cut(s) 1481, 1743
Rsr2I CGGWCCG 1 cut(s) 16
RsrII CGGWCCG 1 cut(s) 16
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 5 cut(s) 173, 666, 695, 1221, 1488
SatI GCNGC 7 cut(s) 284, 711, 1129, 1329, 1542, 1545, 1887
Sau3AI GATC 9 cut(s) 52, 235, 463, 784, 838, 949, 1610, 1797, 1936
Sau96I GGNCC 4 cut(s) 16, 378, 434, 674
SchI GAGTC 3 cut(s) 983, 1823, 1840
ScrFI CCNGG 4 cut(s) 382, 420, 672, 1779
SduI GDGCHC 5 cut(s) 643, 825, 1368, 1478, 1693
SexAI ACCWGGT 1 cut(s) 418
SfuI TTCGAA 3 cut(s) 1083, 1230, 1604
SinI GGWCC 4 cut(s) 16, 378, 434, 674
SmiMI CAYNNNNRTG 2 cut(s) 1481, 1743
SmlI CTYRAG 3 cut(s) 521, 805, 1820
SmoI CTYRAG 3 cut(s) 521, 805, 1820
Sse9I AATT 9 cut(s) 7, 221, 439, 681, 813, 1089, 1273, 1638, 1754
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 3 cut(s) 449, 660, 1716
SspI AATATT 2 cut(s) 529, 1535
SspMI CTAG 4 cut(s) 213, 375, 854, 1880
SstI GAGCTC 1 cut(s) 643
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 4 cut(s) 380, 418, 670, 1777
StyI CCWWGG 4 cut(s) 159, 243, 374, 1400
TaaI ACNGT 6 cut(s) 20, 920, 1263, 1452, 1688, 1861
TaiI ACGT 4 cut(s) 292, 752, 1154, 1286
TaqI TCGA 6 cut(s) 364, 1083, 1230, 1522, 1593, 1604
TasI AATT 9 cut(s) 7, 221, 439, 681, 813, 1089, 1273, 1638, 1754
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 3 cut(s) 881, 1343, 1512
Tru1I TTAA 5 cut(s) 173, 666, 695, 1221, 1488
Tru9I TTAA 5 cut(s) 173, 666, 695, 1221, 1488
TscAI CASTG 5 cut(s) 103, 1375, 1392, 1693, 1896
TseFI GTSAC 2 cut(s) 480, 860
TseI GCWGC 7 cut(s) 283, 710, 1128, 1328, 1541, 1544, 1886
Tsp45I GTSAC 2 cut(s) 480, 860
TspDTI ATGAA 8 cut(s) 192, 960, 1128, 1188, 1410, 1455, 1746, 1763
TspGWI ACGGA 1 cut(s) 1708
TspRI CASTG 5 cut(s) 103, 1375, 1392, 1693, 1896
Van91I CCANNNNNTGG 2 cut(s) 635, 683
VneI GTGCAC 2 cut(s) 1474, 1689
VpaK11BI GGWCC 4 cut(s) 16, 378, 434, 674
XapI RAATTY 3 cut(s) 1089, 1273, 1754
XceI RCATGY 3 cut(s) 1379, 1486, 1622
XcmI CCANNNNNNNNNTGG 1 cut(s) 1523
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 4 cut(s) 213, 375, 854, 1880
ZraI GACGTC 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 1727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.