Rmu_sc0007563.1_g000002

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007563.1
OG0012593
Physical Location & Seq
Reverse (-)
953 .. 2734
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007563.1_g000002.1.cds

Sequence Viewer

Length: 762 bp
atggaaacttttgatgttgttaaaactttcgaagagcattctcatctcattacagatgtacggtttagaccaaattcaacaacgtttgcaacatcttcgtttgatagaaatgtgaagatatgggatgcagccagaccaagtgaatcaatatccaagcttgaagggcacactgagcatgtaatgtcagtggattttcacccaaggaagttcaatctcctttcatcatgcgatagtaacgatgaaatccgactgtggaatgtcaaccaatctaagtgcacaagcatgtttaagggagcaactaaacaagtcagattccagcctcgatttggaaaatatttggctgctgcttcaggaaatagtgtcaatacttttgatgttgagactgccagtttcgacttgtattcgaagggatctggacatgccaaagatgtcctttcaatttgctgggatacaagtgggaagtatcttgcctctgttagtgaagacagtgcacggatttggtcaactgcatcaagcggaaaatgcatatatgaactccactcaaatggcaacaaattccaatcatgcacatttcatcctggatattcactactcttgatcattggttgttacgagtcccttgagttgtggagtccaagtgagagcaataaaactatgactgttccagcgcacaaggggctagttgctgcactggcgtcatccccaaagactgacatggttgcctctgggagccatgatcaggtcgtcaaactatggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

253

Amino Acids

28.13

Weight (kDa)

7.14

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 516
AclI AACGTT 1 cut(s) 83
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 2 cut(s) 73, 554
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 326, 739
AgsI TTSAA 4 cut(s) 78, 161, 211, 438
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 2 cut(s) 278, 493
Alw26I GTCTC 1 cut(s) 374
Alw44I GTGCAC 2 cut(s) 274, 489
AlwI GGATC 1 cut(s) 418
ApaLI GTGCAC 2 cut(s) 274, 489
ApeKI GCWGC 4 cut(s) 128, 341, 344, 686
ApoI RAATTY 2 cut(s) 73, 554
AspLEI GCGC 1 cut(s) 670
AsuHPI GGTGA 1 cut(s) 188
AsuII TTCGAA 2 cut(s) 30, 404
BaeGI GKGCMC 3 cut(s) 168, 278, 493
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 2 cut(s) 278, 493
BbvI GCAGC 4 cut(s) 140, 328, 331, 673
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 1 cut(s) 579
BciVI GTATCC 1 cut(s) 442
BclI TGATCA 2 cut(s) 597, 736
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 680
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 4 cut(s) 129, 342, 345, 687
BlsI GCNGC 4 cut(s) 130, 343, 346, 688
Bme1390I CCNGG 1 cut(s) 579
BmiI GGNNCC 1 cut(s) 731
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 115, 518
BpiI GAAGAC 1 cut(s) 489
Bpu14I TTCGAA 2 cut(s) 30, 404
BpuEI CTTGAG 1 cut(s) 641
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 739
Bse1I ACTGG 2 cut(s) 387, 696
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 3 cut(s) 130, 574, 698
BseLI CCNNNNNNNGG 2 cut(s) 326, 739
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 387, 696
BseSI GKGCMC 3 cut(s) 168, 278, 493
BseXI GCAGC 4 cut(s) 140, 328, 331, 673
BseYI CCCAGC 1 cut(s) 444
BsgI GTGCAG 1 cut(s) 672
BsiHKAI GWGCWC 2 cut(s) 278, 493
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 326, 739
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 37
Bsp119I TTCGAA 2 cut(s) 30, 404
Bsp1286I GDGCHC 3 cut(s) 168, 278, 493
Bsp143I GATC 3 cut(s) 410, 597, 736
BspACI CCGC 1 cut(s) 516
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 731
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 2 cut(s) 30, 404
BsrI ACTGG 2 cut(s) 387, 696
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 410, 597, 736
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 4 cut(s) 63, 252, 488, 661
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 695
BstBI TTCGAA 2 cut(s) 30, 404
BstDEI CTNAG 2 cut(s) 171, 270
BstF5I GGATG 3 cut(s) 130, 574, 698
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 3 cut(s) 413, 600, 739
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 410, 597, 736
BstMWI GCNNNNNNNGC 5 cut(s) 163, 172, 522, 676, 692
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 3 cut(s) 179, 286, 422
BstSCI CCNGG 1 cut(s) 577
BstSLI GKGCMC 3 cut(s) 168, 278, 493
BstV1I GCAGC 4 cut(s) 140, 328, 331, 673
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 410
BsuI GTATCC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 130, 574, 698
BtsIMutI CAGTG 4 cut(s) 168, 192, 493, 689
CfoI GCGC 1 cut(s) 670
CseI GACGC 1 cut(s) 684
Csp6I GTAC 1 cut(s) 59
CviAII CATG 7 cut(s) 176, 225, 283, 419, 564, 715, 734
CviJI RGCY 6 cut(s) 131, 157, 319, 341, 679, 732
CviKI_1 RGCY 6 cut(s) 131, 157, 319, 341, 679, 732
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 171, 270
DpnI GATC 3 cut(s) 412, 599, 738
DpnII GATC 3 cut(s) 410, 597, 736
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 7 cut(s) 179, 228, 286, 422, 567, 718, 737
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 601
FatI CATG 7 cut(s) 175, 224, 282, 418, 563, 714, 733
FbaI TGATCA 2 cut(s) 597, 736
Fnu4HI GCNGC 4 cut(s) 129, 342, 345, 687
FokI GGATG 3 cut(s) 137, 561, 685
Fsp4HI GCNGC 4 cut(s) 129, 342, 345, 687
FspBI CTAG 1 cut(s) 680
GlaI GCGC 1 cut(s) 669
GluI GCNGC 4 cut(s) 129, 342, 345, 687
GsaI CCCAGC 1 cut(s) 448
HgaI GACGC 1 cut(s) 684
HhaI GCGC 1 cut(s) 670
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 7 cut(s) 179, 228, 286, 422, 567, 718, 737
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 2 cut(s) 262, 504
HindII GTYRAC 2 cut(s) 262, 504
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 4 cut(s) 143, 312, 614, 631
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 4 cut(s) 262, 276, 491, 504
Hpy188I TCNGA 2 cut(s) 248, 311
Hpy188III TCNNGA 3 cut(s) 351, 414, 595
Hpy8I GTNNAC 4 cut(s) 262, 276, 491, 504
HpyAV CCTTC 2 cut(s) 155, 400
HpyCH4III ACNGT 4 cut(s) 63, 252, 488, 661
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 8 cut(s) 89, 128, 276, 491, 509, 525, 567, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 172, 522, 676, 692
HpyF3I CTNAG 2 cut(s) 171, 270
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 7 cut(s) 179, 228, 286, 422, 567, 718, 737
HspAI GCGC 1 cut(s) 668
Ksp22I TGATCA 2 cut(s) 597, 736
Kzo9I GATC 3 cut(s) 410, 597, 736
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 293, 729
Lsp1109I GCAGC 4 cut(s) 140, 328, 331, 673
LweI GCATC 2 cut(s) 115, 518
MaeI CTAG 1 cut(s) 680
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 233, 608
MalI GATC 3 cut(s) 412, 599, 738
MboI GATC 3 cut(s) 410, 597, 736
MboII GAAGA 4 cut(s) 44, 87, 127, 494
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 3 cut(s) 168, 278, 493
MluCI AATT 3 cut(s) 73, 438, 554
MlyI GAGTC 2 cut(s) 623, 640
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 3 cut(s) 330, 481, 733
Mph1103I ATGCAT 1 cut(s) 527
MseI TTAA 2 cut(s) 21, 288
MslI CAYNNNNRTG 2 cut(s) 281, 543
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 5 cut(s) 163, 172, 522, 676, 692
NdeII GATC 3 cut(s) 410, 597, 736
NlaIII CATG 7 cut(s) 179, 228, 286, 422, 567, 718, 737
NlaIV GGNNCC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 527
NspI RCATGY 3 cut(s) 179, 286, 422
NspV TTCGAA 2 cut(s) 30, 404
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 143, 312
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 4 cut(s) 130, 343, 346, 688
PleI GAGTC 2 cut(s) 622, 639
PpsI GAGTC 2 cut(s) 622, 639
Psp1406I AACGTT 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 2 cut(s) 281, 543
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 21, 288
SatI GCNGC 4 cut(s) 129, 342, 345, 687
Sau3AI GATC 3 cut(s) 410, 597, 736
SchI GAGTC 2 cut(s) 623, 640
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 3 cut(s) 168, 278, 493
SetI ASST 3 cut(s) 86, 159, 744
SfaNI GCATC 2 cut(s) 115, 518
SfuI TTCGAA 2 cut(s) 30, 404
SmiMI CAYNNNNRTG 2 cut(s) 281, 543
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 3 cut(s) 73, 438, 554
SsiI CCGC 1 cut(s) 516
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 4 cut(s) 63, 252, 488, 661
TaiI ACGT 1 cut(s) 86
TaqI TCGA 4 cut(s) 30, 322, 393, 404
TasI AATT 3 cut(s) 73, 438, 554
TfiI GAWTC 2 cut(s) 143, 312
Tru1I TTAA 2 cut(s) 21, 288
Tru9I TTAA 2 cut(s) 21, 288
TscAI CASTG 4 cut(s) 175, 192, 493, 696
TseI GCWGC 4 cut(s) 128, 341, 344, 686
TspDTI ATGAA 4 cut(s) 210, 255, 546, 563
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 4 cut(s) 175, 192, 493, 696
VneI GTGCAC 2 cut(s) 274, 489
XapI RAATTY 2 cut(s) 73, 554
XceI RCATGY 3 cut(s) 179, 286, 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XspI CTAG 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.