FvH4_3g09680

Photosystem I reaction center subunit psaK

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015469
Physical Location & Seq
Forward (+)
5629246 .. 5630445
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09680.t1

Sequence Viewer

Length: 390 bp
ATGGCAGCAGCTACTATGACTACTTCTCTCCCTCAGTTCAATGGGTTGAGACCCAAGATCTCATCCAATGTACAGAGCTTGGCTGCTGTTCAACCAATGAGGCGCAAGAGCCAAGGTGCTTTGGGAGCTCGCTGTGACTTCATAGGTTCACCCACCAATTTGATCATGGTGACTACTACAAGCCTAATGTTGTTTGCTGGGAGATTTGGGTTGGCACCATCTGCAAACAGGAAGGCAACAGCAGGATTGAAGCTCGAAATCAGGGAGTCAGGTCTTCAAACTGGTGACCCAGCTGGGTTCACCCTTGCTGATACCTTGGCTTGTGGGACTGTAGGTCACATGATTGGGGTTGGGGTTGTTCTTGGCCTTAAGAACATGGGTGCTCTGTAA

Protein Analysis

130

Amino Acids

13.26

Weight (kDa)

10.52

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSI_PSAK PF01241 52 - 127 5.7e-17 Photosystem I psaG / psaK
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30380
fragaria_vesca FvH4_3g09680
malus_domestica MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica Prupe.4G088200_v2.0.a1
pyrus_communis pycom05g25710 pycom10g21120
rosa_chinensis RchiOBHm_Chr5g0015361
rosa_laevigata RLG00000032195
rosa_multiflora Rmu_sc0014430.1_g000001
rosa_rugosa Rorug05G0026800
rosa_samantha Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana Rw5G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AfaI GTAC 1 cut(s) 72
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 4 cut(s) 40, 92, 250, 278
AhdI GACNNNNNGTC 1 cut(s) 333
AluBI AGCT 5 cut(s) 11, 78, 128, 253, 293
AluI AGCT 5 cut(s) 11, 78, 128, 253, 293
Alw21I GWGCWC 2 cut(s) 130, 385
Alw26I GTCTC 1 cut(s) 43
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 5, 8, 83
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 4 cut(s) 141, 181, 292, 296
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 2 cut(s) 130, 385
BbvI GCAGC 3 cut(s) 17, 20, 70
BccI CCATC 1 cut(s) 226
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 43
BfmI CTRYAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 368
BglII AGATCT 1 cut(s) 57
BisI GCNGC 3 cut(s) 6, 9, 84
BlsI GCNGC 3 cut(s) 7, 10, 85
BmeRI GACNNNNNGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 112, 315
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 112, 315
BseGI GGATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 3 cut(s) 17, 20, 70
BseYI CCCAGC 3 cut(s) 197, 289, 293
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 130, 385
BslFI GGGAC 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 1 cut(s) 366
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 130, 385
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 57, 162
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 112, 315
BssMI GATC 2 cut(s) 57, 162
BssT1I CCWWGG 2 cut(s) 112, 315
Bst4CI ACNGT 1 cut(s) 331
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 60, 165
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 2 cut(s) 57, 162
BstMWI GCNNNNNNNGC 2 cut(s) 125, 221
BstPI GGTNACC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 17, 20, 70
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 166, 340, 376
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 59, 164
DpnII GATC 2 cut(s) 57, 162
DriI GACNNNNNGTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 112, 315
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 128
Eco91I GGTNACC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 112, 315
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 112, 315
FaeI CATG 3 cut(s) 169, 343, 379
FaiI YATR 5 cut(s) 17, 143, 167, 341, 377
FaqI GGGAC 1 cut(s) 340
FatI CATG 3 cut(s) 165, 339, 375
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 6, 9, 84
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 6, 9, 84
GlaI GCGC 1 cut(s) 104
GluI GCNGC 3 cut(s) 6, 9, 84
GsaI CCCAGC 3 cut(s) 201, 293, 297
HaeIII GGCC 1 cut(s) 366
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 169, 343, 379
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 266
HphI GGTGA 4 cut(s) 141, 181, 292, 296
Hpy166II GTNNAC 2 cut(s) 149, 300
Hpy8I GTNNAC 2 cut(s) 149, 300
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 221
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 3 cut(s) 169, 343, 379
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 57, 162
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 8 cut(s) 183, 214, 228, 247, 255, 267, 279, 303
Lsp1109I GCAGC 3 cut(s) 17, 20, 70
MaeIII GTNAC 4 cut(s) 134, 169, 284, 335
MalI GATC 2 cut(s) 59, 164
MboI GATC 2 cut(s) 57, 162
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 130, 385
MluCI AATT 1 cut(s) 157
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 2 cut(s) 42, 93
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 125, 221
NdeII GATC 2 cut(s) 57, 162
NlaIII CATG 3 cut(s) 169, 343, 379
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 4 cut(s) 134, 169, 284, 335
PkrI GCNGC 3 cut(s) 7, 10, 85
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 3 cut(s) 197, 289, 293
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 6, 9, 84
Sau3AI GATC 2 cut(s) 57, 162
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 2 cut(s) 130, 385
SfcI CTRYAG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 157
SstI GAGCTC 1 cut(s) 130
StyI CCWWGG 2 cut(s) 112, 315
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 70
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 4 cut(s) 134, 169, 284, 335
TseI GCWGC 3 cut(s) 5, 8, 83
Tsp45I GTSAC 4 cut(s) 134, 169, 284, 335
TspDTI ATGAA 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.