Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0015469

Physical Location & Seq

Genomic Coordinates Reverse (-)

22953068 .. 22954169

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1109700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGCTGCCGCTGTGACCGCTTCTCTCCCACAATTCAATGGCCTCAGACCCAAAATCTCATTCTCCAATGCGCGAAGCATGGCAATTGTTCAGCCGATGAGGCGCAAGGGCCAGGGCGCTTTGGGAGCTCGCTGCGATTACATCGGCTCGCCTACCAATTTGATAATGGTGACCACAACAAGCCTAATGCTGTTTGCCGGAAGATTCGGGTTGGCTCCGTCGGCAAACAGGAAGTCAACGGCAGGATTGAAGCTTGAAACAAGGGACTCTGGGCTGCAGACCGGCGACCCAGCTGGGTTTACTCTTGCTGATACATTGGCCTGTGGTTCTGTTGGTCACATTATTGGGGTTGGAGTTGTTCTTGGCCTTAAGAATATTGGTGCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

131

Amino Acids

13.31

Weight (kDa)

10.58

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	53 - 128	9.3e-19	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30380
fragaria_vesca	FvH4_3g09680
malus_domestica	MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica	Prupe.4G088200_v2.0.a1
pyrus_communis	pycom05g25710 pycom10g21120
rosa_chinensis	RchiOBHm_Chr5g0015361
rosa_laevigata	RLG00000032195
rosa_multiflora	Rmu_sc0014430.1_g000001
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana	Rw5G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccII	CGCG	1 cut(s)	76
AciI	CCGC	2 cut(s)	12, 21
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	40, 253, 260
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	8, 131, 256, 296
AluI	AGCT	4 cut(s)	8, 131, 256, 296
Alw21I	GWGCWC	1 cut(s)	133
AoxI	GGCC	4 cut(s)	43, 112, 321, 367
ApeKI	GCWGC	4 cut(s)	5, 8, 135, 277
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	3 cut(s)	76, 108, 122
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	17, 122, 264
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	5 cut(s)	6, 9, 12, 136, 278
BlsI	GCNGC	5 cut(s)	7, 10, 13, 137, 279
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	219, 385
BmrFI	CCNGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	3 cut(s)	17, 122, 264
BseYI	CCCAGC	2 cut(s)	292, 296
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	4 cut(s)	45, 114, 323, 369
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	201, 285
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	45, 114, 323, 369
Bsp1286I	GDGCHC	2 cut(s)	133, 388
BspACI	CCGC	2 cut(s)	12, 21
BspANI	GGCC	4 cut(s)	45, 114, 323, 369
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	219, 385
BspMAI	CTGCAG	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	133, 152
BstDEI	CTNAG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	3 cut(s)	76, 108, 122
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 103, 128, 224
BstNI	CCWGG	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	17, 122, 264
BsuRI	GGCC	4 cut(s)	45, 114, 323, 369
Cac8I	GCNNGC	2 cut(s)	133, 152
CfoI	GCGC	3 cut(s)	76, 108, 122
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 136, 278
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 136, 278
GlaI	GCGC	3 cut(s)	75, 107, 121
GluI	GCNGC	5 cut(s)	6, 9, 12, 136, 278
GsaI	CCCAGC	2 cut(s)	296, 300
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	45, 114, 323, 369
HapII	CCGG	2 cut(s)	201, 285
HhaI	GCGC	3 cut(s)	76, 108, 122
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	3 cut(s)	74, 106, 120
HinP1I	GCGC	3 cut(s)	74, 106, 120
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	207, 269
HpaII	CCGG	2 cut(s)	201, 285
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	240, 303
Hpy188I	TCNGA	1 cut(s)	50
Hpy8I	GTNNAC	2 cut(s)	240, 303
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 103, 128, 224
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	3 cut(s)	74, 106, 120
LmnI	GCTCC	2 cut(s)	128, 223
Lsp1109I	GCAGC	3 cut(s)	17, 122, 264
MaeIII	GTNAC	3 cut(s)	16, 172, 338
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	133, 388
MluCI	AATT	3 cut(s)	35, 87, 160
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	2 cut(s)	56, 96
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	3 cut(s)	8, 14, 296
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	201, 285
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 103, 128, 224
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	219, 385
NmuCI	GTSAC	3 cut(s)	16, 172, 338
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	7, 10, 13, 137, 279
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	172
PspFI	CCCAGC	2 cut(s)	292, 296
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	219, 385
PspPI	GGNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	282
PvuII	CAGCTG	2 cut(s)	8, 296
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	5 cut(s)	6, 9, 12, 136, 278
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	133, 388
SetI	ASST	4 cut(s)	10, 133, 258, 298
SfcI	CTRYAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	35, 87, 160
SsiI	CCGC	2 cut(s)	12, 21
SspI	AATATT	1 cut(s)	379
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	114
TasI	AATT	3 cut(s)	35, 87, 160
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	3 cut(s)	16, 172, 338
TseI	GCWGC	4 cut(s)	5, 8, 135, 277
Tsp45I	GTSAC	3 cut(s)	16, 172, 338
TspGWI	ACGGA	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.