Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015469

Physical Location & Seq

Genomic Coordinates Reverse (-)

41056350 .. 41057329

Gene Structure 980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1276100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCAACTGCCACTGTGACTACTTCTCTCCCCCAATTCAATGGGCTCAGACCCCAAATCTCCTTCTCTAATGTGCAAAGCATGGCAAGTTCTGCTTTCGCCATTGCTCAACCAATGAGGCGCAAAGGGCAGGGCGCTTTGGGAGCTCGCTGTGATTTCATTGGTTCATCCACCAATTTGATAATGGTGACTACTACAAGCCTAATGCTGTTTGCCGGAAGATTCGGGTTGGCCCCGTCGGCAAACAGGAAGGCAACGGCAGGATTAAAGCTTGAAACAAGGGACTCTGGACTGCAGACCGGCGATCCGGCTGGGTTTACGCTTGCTGATACCTTGGCTTGTGGGACTGTTGGTCACATTATTGGGGTTGGTTTTGTTCTTGGCCTTAAGAATGTTGGTGCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

136

Amino Acids

13.84

Weight (kDa)

10.42

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PSAK	PF01241	57 - 133	8.7e-18	Photosystem I psaG / psaK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30380
fragaria_vesca	FvH4_3g09680
malus_domestica	MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica	Prupe.4G088200_v2.0.a1
pyrus_communis	pycom05g25710 pycom10g21120
rosa_chinensis	RchiOBHm_Chr5g0015361
rosa_laevigata	RLG00000032195
rosa_multiflora	Rmu_sc0014430.1_g000001
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana	Rw5G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	40, 275
AhdI	GACNNNNNGTC	1 cut(s)	351
AluBI	AGCT	2 cut(s)	146, 271
AluI	AGCT	2 cut(s)	146, 271
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	299
AoxI	GGCC	2 cut(s)	231, 382
AspLEI	GCGC	2 cut(s)	123, 137
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	48, 148
Bbv12I	GWGCWC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	234, 400
BsaJI	CCNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	233, 384
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	216, 300, 308
BslFI	GGGAC	2 cut(s)	296, 358
BsmFI	GGGAC	2 cut(s)	296, 358
BsnI	GGCC	2 cut(s)	233, 384
Bsp1286I	GDGCHC	3 cut(s)	48, 148, 403
Bsp143I	GATC	1 cut(s)	304
BspANI	GGCC	2 cut(s)	233, 384
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	234, 400
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	16, 349
BstAFI	CTTAAG	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	148, 324
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	123, 137
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 127, 143, 239
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	233, 384
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	148, 324
CfoI	GCGC	2 cut(s)	123, 137
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	8 cut(s)	46, 146, 201, 233, 271, 311, 338, 384
CviKI_1	RGCY	8 cut(s)	46, 146, 201, 233, 271, 311, 338, 384
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	48, 148
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	48, 148
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	2 cut(s)	296, 358
FatI	CATG	1 cut(s)	81
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	2 cut(s)	48, 148
GlaI	GCGC	2 cut(s)	122, 136
GsaI	CCCAGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	233, 384
HapII	CCGG	3 cut(s)	216, 300, 308
HhaI	GCGC	2 cut(s)	123, 137
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	121, 135
HinP1I	GCGC	2 cut(s)	121, 135
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	222, 284
HpaII	CCGG	3 cut(s)	216, 300, 308
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	73, 244
HpyCH4III	ACNGT	2 cut(s)	16, 349
HpyCH4V	TGCA	2 cut(s)	76, 295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 127, 143, 239
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	121, 135
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	8 cut(s)	116, 229, 232, 246, 273, 297, 313, 321
MaeIII	GTNAC	3 cut(s)	16, 187, 353
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	48, 148, 403
MluCI	AATT	2 cut(s)	35, 175
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	266, 387
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	3 cut(s)	216, 300, 308
MwoI	GCNNNNNNNGC	4 cut(s)	92, 127, 143, 239
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	234, 400
NmuCI	GTSAC	3 cut(s)	16, 187, 353
PfeI	GAWTC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	234, 400
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	266, 387
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	3 cut(s)	48, 148, 403
SetI	ASST	3 cut(s)	148, 273, 335
SfcI	CTRYAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	35, 175
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	16, 349
TasI	AATT	2 cut(s)	35, 175
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	266, 387
Tru9I	TTAA	2 cut(s)	266, 387
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	16, 187, 353
Tsp45I	GTSAC	3 cut(s)	16, 187, 353
TspDTI	ATGAA	2 cut(s)	148, 156
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.