Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015469

Physical Location & Seq

Genomic Coordinates Forward (+)

4329424 .. 4330281

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGCAGCCACTGTGACCACTTCTCTCCCCCAGTTCAATGGGCTAAAATCCAAAGTCTCATACGCAAATGTACAAAGCCTGGCAGCAGTTCAACCAATGAGGCGCAAGGGCCAGGGTGCTTTGGGAGCTCGCTGTGATTTCATTGGCTCACCCACCAATTTGATAATGGTGACTACTACAACCCTAATGCTATTTGCTGGGAGGTTTGGGTTGGCCCCATCTGCAAACAGGAAGGCAACAGCAGGGTTGAAGCTTGAGACCAGGGACTCTGGGCTGCAGACCGGTGACCCAGCTGGGTTCACTCTTGCTGATACCTTGGCTTGTGGCACTGTGGGGCACATTATTGGGGTTGGGGTTGTTCTTGGCCTTAAGAATATTGGTTCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

131

Amino Acids

13.27

Weight (kDa)

10.14

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30380
fragaria_vesca	FvH4_3g09680
malus_domestica	MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica	Prupe.4G088200_v2.0.a1
pyrus_communis	pycom05g25710 pycom10g21120
rosa_chinensis	RchiOBHm_Chr5g0015361
rosa_laevigata	RLG00000032195
rosa_multiflora	Rmu_sc0014430.1_g000001
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana	Rw5G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	40, 95, 253
AjnI	CCWGG	3 cut(s)	81, 114, 263
AluBI	AGCT	3 cut(s)	131, 256, 296
AluI	AGCT	3 cut(s)	131, 256, 296
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	64, 254
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	3 cut(s)	112, 216, 367
ApeKI	GCWGC	4 cut(s)	5, 8, 86, 277
AsiGI	ACCGGT	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	112, 217
AsuHPI	GGTGA	3 cut(s)	144, 184, 299
BaeGI	GKGCMC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	17, 20, 98, 264
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	3 cut(s)	83, 116, 265
BcoDI	GTCTC	2 cut(s)	64, 254
BfmI	CTRYAG	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	4 cut(s)	6, 9, 87, 278
BlsI	GCNGC	4 cut(s)	7, 10, 88, 279
Bme1390I	CCNGG	3 cut(s)	83, 116, 265
BmgT120I	GGNCC	2 cut(s)	112, 217
BmiI	GGNNCC	2 cut(s)	219, 385
BmrFI	CCNGG	3 cut(s)	83, 116, 265
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	115, 264, 318
BsaWI	WCCGGW	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	83, 116, 265
BseDI	CCNNGG	3 cut(s)	115, 264, 318
BseNI	ACTGG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	17, 20, 98, 264
BseYI	CCCAGC	3 cut(s)	200, 292, 296
BshFI	GGCC	3 cut(s)	114, 218, 369
BshTI	ACCGGT	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	64, 254
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	114, 218, 369
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	133, 342
Bsp1407I	TGTACA	1 cut(s)	73
BspANI	GGCC	3 cut(s)	114, 218, 369
BspLI	GGNNCC	2 cut(s)	219, 385
BspMAI	CTGCAG	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	115, 264, 318
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	83, 116, 265
Bst4CI	ACNGT	2 cut(s)	16, 334
BstAFI	CTTAAG	1 cut(s)	371
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	133
BstEII	GGTNACC	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	108
BstMAI	GTCTC	2 cut(s)	64, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 224
BstNI	CCWGG	3 cut(s)	83, 116, 265
BstPI	GGTNACC	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	81, 114, 263
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	17, 20, 98, 264
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	114, 218, 369
BtsIMutI	CAGTG	2 cut(s)	12, 330
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	112, 217
Csp6I	GTAC	1 cut(s)	74
CspAI	ACCGGT	1 cut(s)	284
CviQI	GTAC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	287
EcoRII	CCWGG	3 cut(s)	81, 114, 263
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	318
FaiI	YATR	1 cut(s)	64
FaqI	GGGAC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	6, 9, 87, 278
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	6, 9, 87, 278
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	4 cut(s)	6, 9, 87, 278
GsaI	CCCAGC	3 cut(s)	204, 296, 300
HaeIII	GGCC	3 cut(s)	114, 218, 369
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	144, 184, 299
Hpy166II	GTNNAC	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	2 cut(s)	16, 334
HpyCH4V	TGCA	2 cut(s)	227, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 224
HspAI	GCGC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	4 cut(s)	17, 20, 98, 264
MaeIII	GTNAC	3 cut(s)	16, 172, 287
MhlI	GDGCHC	2 cut(s)	133, 342
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	2 cut(s)	96, 198
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	3 cut(s)	83, 116, 265
MvaI	CCWGG	3 cut(s)	83, 116, 265
MwoI	GCNNNNNNNGC	2 cut(s)	128, 224
NlaIV	GGNNCC	2 cut(s)	219, 385
NmuCI	GTSAC	3 cut(s)	16, 172, 287
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	7, 10, 88, 279
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	81, 114, 263
PspEI	GGTNACC	1 cut(s)	287
PspFI	CCCAGC	3 cut(s)	200, 292, 296
PspGI	CCWGG	3 cut(s)	81, 114, 263
PspN4I	GGNNCC	2 cut(s)	219, 385
PspPI	GGNCC	2 cut(s)	112, 217
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	6, 9, 87, 278
Sau96I	GGNCC	2 cut(s)	112, 217
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	83, 116, 265
SduI	GDGCHC	2 cut(s)	133, 342
SetI	ASST	5 cut(s)	133, 209, 258, 298, 320
SfcI	CTRYAG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	257, 371
SmoI	CTYRAG	2 cut(s)	257, 371
Sse9I	AATT	1 cut(s)	160
SspI	AATATT	1 cut(s)	379
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	3 cut(s)	81, 114, 263
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	16, 334
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	19, 337
TseFI	GTSAC	3 cut(s)	16, 172, 287
TseI	GCWGC	4 cut(s)	5, 8, 86, 277
Tsp45I	GTSAC	3 cut(s)	16, 172, 287
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	19, 337
Vha464I	CTTAAG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.