Rmu_sc0014430.1_g000001

Photosystem I reaction center subunit psaK

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014430.1
OG0015469
Physical Location & Seq
Reverse (-)
83 .. 1076
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014430.1_g000001.1.cds

Sequence Viewer

Length: 390 bp
atggcagcagctactgtgactacttctctcccccagttcagtgggttgagacccaagatctcatccaatgtacagagcttggctgctgttcaaccaatgaggcgcaagagccaaggtgccttgggagctcgctgtgatttcatcggttcacccaccaatttgataatggtgactactacaagcctaatgttgtttgctgggagattcgggttggcgccatctgcaaacaggaaggcaacagcaggattgaagcttgaaataagggactcagggcttcagaccggtgacccagctgggttcacccttgctgataccttggcttgtgggactgtgggtcacatcattggggttggggttgttcttggccttaagaacattggtgctctgtaa

Protein Analysis

129

Amino Acids

13.16

Weight (kDa)

10.52

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015469)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30380
fragaria_vesca FvH4_3g09680
malus_domestica MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica Prupe.4G088200_v2.0.a1
pyrus_communis pycom05g25710 pycom10g21120
rosa_chinensis RchiOBHm_Chr5g0015361
rosa_laevigata RLG00000032195
rosa_multiflora Rmu_sc0014430.1_g000001
rosa_rugosa Rorug05G0026800
rosa_samantha Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana Rw5G010410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 214
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 72
AflII CTTAAG 1 cut(s) 368
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 3 cut(s) 92, 250, 257
AhdI GACNNNNNGTC 1 cut(s) 333
AluBI AGCT 5 cut(s) 11, 78, 128, 253, 293
AluI AGCT 5 cut(s) 11, 78, 128, 253, 293
Alw21I GWGCWC 2 cut(s) 130, 385
Alw26I GTCTC 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 5, 8, 83
AsiGI ACCGGT 1 cut(s) 281
AspLEI GCGC 2 cut(s) 105, 217
AsuHPI GGTGA 4 cut(s) 141, 181, 292, 296
BanI GGYRCC 2 cut(s) 116, 214
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 130, 385
BbvI GCAGC 3 cut(s) 17, 20, 70
BccI CCATC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 368
BglII AGATCT 1 cut(s) 57
BisI GCNGC 3 cut(s) 6, 9, 84
BlsI GCNGC 3 cut(s) 7, 10, 85
BmeRI GACNNNNNGTC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 118, 216
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 112, 120, 315
BsaWI WCCGGW 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 34
BseDI CCNNGG 3 cut(s) 112, 120, 315
BseGI GGATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 17, 20, 70
BseYI CCCAGC 3 cut(s) 197, 289, 293
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 2 cut(s) 116, 214
BshTI ACCGGT 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 130, 385
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 2 cut(s) 278, 340
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 278, 340
BsnI GGCC 1 cut(s) 366
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 130, 385
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 57
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 118, 216
BspT107I GGYRCC 2 cut(s) 116, 214
BspTI CTTAAG 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 112, 120, 315
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 3 cut(s) 112, 120, 315
Bst4CI ACNGT 2 cut(s) 16, 331
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 2 cut(s) 105, 217
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 125, 221
BstPI GGTNACC 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 17, 20, 70
BstX2I RGATCY 1 cut(s) 57
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 366
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 2 cut(s) 105, 217
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 281
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 268
DinI GGCGCC 1 cut(s) 216
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DriI GACNNNNNGTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 128
Eco130I CCWWGG 3 cut(s) 112, 120, 315
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 284
EcoT14I CCWWGG 3 cut(s) 112, 120, 315
EcoT38I GRGCYC 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 3 cut(s) 112, 120, 315
FaqI GGGAC 2 cut(s) 278, 340
Fnu4HI GCNGC 3 cut(s) 6, 9, 84
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 6, 9, 84
GlaI GCGC 2 cut(s) 104, 216
GluI GCNGC 3 cut(s) 6, 9, 84
GsaI CCCAGC 3 cut(s) 201, 293, 297
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 282
HhaI GCGC 2 cut(s) 105, 217
Hin1I GRCGYC 1 cut(s) 215
Hin6I GCGC 2 cut(s) 103, 215
HinP1I GCGC 2 cut(s) 103, 215
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 204, 266
HpaII CCGG 1 cut(s) 282
HphI GGTGA 4 cut(s) 141, 181, 292, 296
Hpy166II GTNNAC 2 cut(s) 149, 300
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 2 cut(s) 149, 300
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 16, 331
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 221
HpyF3I CTNAG 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 215
HspAI GCGC 2 cut(s) 103, 215
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 8 cut(s) 47, 183, 214, 228, 255, 279, 295, 303
Lsp1109I GCAGC 3 cut(s) 17, 20, 70
MaeIII GTNAC 4 cut(s) 16, 169, 284, 335
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 130, 385
MluCI AATT 1 cut(s) 157
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 93
MseI TTAA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 125, 221
NarI GGCGCC 1 cut(s) 215
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 2 cut(s) 118, 216
NmuCI GTSAC 4 cut(s) 16, 169, 284, 335
PfeI GAWTC 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 3 cut(s) 7, 10, 85
PleI GAGTC 1 cut(s) 260
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 3 cut(s) 197, 289, 293
PspN4I GGNNCC 2 cut(s) 118, 216
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 6, 9, 84
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 130, 385
SetI ASST 7 cut(s) 13, 80, 118, 130, 255, 295, 317
SfoI GGCGCC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 157
SspDI GGCGCC 1 cut(s) 214
SstI GAGCTC 1 cut(s) 130
StyI CCWWGG 3 cut(s) 112, 120, 315
TaaI ACNGT 2 cut(s) 16, 331
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 4 cut(s) 16, 169, 284, 335
TseI GCWGC 3 cut(s) 5, 8, 83
Tsp45I GTSAC 4 cut(s) 16, 169, 284, 335
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 46
Vha464I CTTAAG 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.