Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015469

Physical Location & Seq

Genomic Coordinates Reverse (-)

27060828 .. 27061637

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGCTACCACTGTGACCACTTCTCTCCCCCAGTTCAACGGGCTCAGACCCAAAATCTCCTTCTCTAATGTGCAAAGCATGGCGGTTGCTCAACCAATGAGGCGCAAAGGCCAGGGCGCTTTGGGAGCTCGCTGCGATTTCATTGGTTCATCCACCAATTTGATAATGGTGACTACAACAAGCCTAATGTTGTTTGCTGGAAGATTCGGGTTGGCCCCTTCGGCAAACAGGAAGGCAACGGCAGGATTGAAGCTTGAAACAAGGGACTCTGGGCTACAGACTGGCGACCCGGCTGGGTTTACACTTGCTGATACCTTGGCCTGTGGGACAGTTGGTCACATTATTGGGGTTGGTGTTGTTCTTGGCCTTAAGAATGTTGGTGCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PSAK

Protein Analysis

131

Amino Acids

13.31

Weight (kDa)

10.52

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30380
fragaria_vesca	FvH4_3g09680
malus_domestica	MD00G1109700.v1.1 MD05G1276100.v1.1
prunus_persica	Prupe.4G088200_v2.0.a1
pyrus_communis	pycom05g25710 pycom10g21120
rosa_chinensis	RchiOBHm_Chr5g0015361
rosa_laevigata	RLG00000032195
rosa_multiflora	Rmu_sc0014430.1_g000001
rosa_rugosa	Rorug05G0026800
rosa_samantha	Rh5AG120400 Rh5BG119400 Rh5CG129800 Rh5DG118400
rosa_wichuraiana	Rw5G010410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AciI	CCGC	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	40, 253, 260
AhdI	GACNNNNNGTC	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	8, 131, 256
AluI	AGCT	3 cut(s)	8, 131, 256
Alw21I	GWGCWC	1 cut(s)	133
AoxI	GGCC	4 cut(s)	112, 216, 321, 367
ApeKI	GCWGC	2 cut(s)	5, 135
AspLEI	GCGC	2 cut(s)	108, 122
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	48, 133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	17, 122
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	6, 136
BlsI	GCNGC	2 cut(s)	7, 137
Bme1390I	CCNGG	2 cut(s)	116, 293
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	219, 385
BmrFI	CCNGG	2 cut(s)	116, 293
BmrI	ACTGGG	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	115, 318
Bse1I	ACTGG	2 cut(s)	34, 289
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	115, 318
BseGI	GGATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	34, 289
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	17, 122
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	4 cut(s)	114, 218, 323, 369
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	281, 343
BsmFI	GGGAC	2 cut(s)	281, 343
BsnI	GGCC	4 cut(s)	114, 218, 323, 369
Bsp1286I	GDGCHC	3 cut(s)	48, 133, 388
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	4 cut(s)	114, 218, 323, 369
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	219, 385
BspT107I	GGYRCC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	34, 289
BssECI	CCNNGG	2 cut(s)	115, 318
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	16, 334
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	108, 122
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 224
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 291
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	17, 122
BsuRI	GGCC	4 cut(s)	114, 218, 323, 369
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	108, 122
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	47
DriI	GACNNNNNGTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	48, 133
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	48, 133
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	85
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	2 cut(s)	281, 343
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	6, 136
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	2 cut(s)	48, 133
Fsp4HI	GCNGC	2 cut(s)	6, 136
GlaI	GCGC	2 cut(s)	107, 121
GluI	GCNGC	2 cut(s)	6, 136
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	114, 218, 323, 369
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	2 cut(s)	108, 122
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	106, 120
HinP1I	GCGC	2 cut(s)	106, 120
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	207, 269
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	3 cut(s)	73, 229, 231
HpyCH4III	ACNGT	2 cut(s)	16, 334
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 224
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	106, 120
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	17, 122
MaeIII	GTNAC	3 cut(s)	16, 172, 338
MboII	GAAGA	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	48, 133, 388
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	116, 293
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	128, 224
NciI	CCSGG	1 cut(s)	293
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	219, 385
NmuCI	GTSAC	3 cut(s)	16, 172, 338
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	7, 137
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	219, 385
PspPI	GGNCC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	6, 136
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	116, 293
SduI	GDGCHC	3 cut(s)	48, 133, 388
SetI	ASST	4 cut(s)	10, 133, 258, 320
SfcI	CTRYAG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	114, 291
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	16, 334
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	16, 172, 338
TseI	GCWGC	2 cut(s)	5, 135
Tsp45I	GTSAC	3 cut(s)	16, 172, 338
TspDTI	ATGAA	2 cut(s)	133, 141
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.