Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Reverse (-)

5785474 .. 5799935

Gene Structure 14462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5139 bp

ATGGAGGACAATGTGGAGCCACCAGGGAAAGACCCAGTTGAGAGTCCCCAAGTTTCTGAGAAGCAGGCCTCCCTTGGTTCATCAGAAGCTGCAAAGAGAGTTGCCAAGACAGTGAAACCTGGTGCTGGAGTCACATCAAAGGGCTCGGTCCCCATTAGTAGTGTTCAGAAGAAAGTAGAGGCGAAAAGTGGTTTGGATTCTAGCTCGAGTGCAACGAAGTCAAGTGCAACTGGTGCTTCCAGAAGTTCGAGTTCAGTTCCAGTGGTAAGGCGAAACAGCACTGGTGCTTTGCCTCCGTCAGTCTCAGCTGGAAGACAGCAGGGCAATGCTACTCCAATTGTTGGCAATAAGTCTGCAGACCCTATAAGACGGTCTCTACCCGAGCTTCGGAGAAGTTCTTTGCCTTCAGTAGTTACAAAATCAACCAGTGTTTCACAGGCTGTAAAGTTGTCTGCAGGGTCACCATTGGACCGGAGTCTGAATAAATCATCCGGGTCGCTTGTGAGGAAGCCTTCTGTCAAGCCAGCATCGTCTGTTTCATCTTCATCTTCAAGGATGACAACTTCTTCATTGGACAGTAGTGCTAGTAGTGGAGTCAGGAAGTCAGTCTCGAAGCTTTCTTCTTCATCAGCTCGATCACCTACAGTTACCAGTGGACTGAGATCTGGGTCTTTGTCTTCGTCTATGAATAGTAGTACTAGTTTATCTGGCCGCAGGAAAGCGGCAACACCTGAAAGCAGGAAAGCAGCAACACCTGAAGGTCGGGATTCTCGGTTTATTGTTCTTCCAAAGGTGGAAATCAAAGCTGGTGATGATCTGAGGTTAGACCTTAGGGGTCACAGAGTTCGCAGTCTCAAGGCCAGTGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTCAGAGATAATCTTTTATCTACGTTGGAAGGGGTTGAAATACTGACAAGAGTAAAGGTTCTTGATTTGAGTTTCAATGATTTCAAGGGGCCTGGATTCGAACCTCTTGAAAATTGCAGAGTCTTACAGCAACTTTATCTGGCTGGAAATCAGATCACGTCACTTGCAAGCCTCCCTCAGCTCCCTAATTTGGAGTTCCTCTCTGTTGCCCAAAATAAGTTGAAGAGTCTTACAATGGCAAGTCAACCTCGTCTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGATTCCCGTATTTACCAGTTCTTGAGCATTTACGAGTGGAGGAGAATCCTATACTAAAAATGCGCAATTTAGAAGCAGCGTCCATTTTGCTTGCTGGTCCTACCTTAAAAAAGTTCAATGACAGAGATCTTTCTCGAGAACAGGTTGCAATAGCAAAGCGTTATCCTGCACACACATCATTATGCATTAGAGAGGGTTGGGAGTTTTGCCGTCCAGAGCATGCAGCAGACTCAACGTTTAGCTTTCTAGTTGAGCAATGGAAGGATAACTTGCCTCCAGGCTTCCTGGTCAAGGAGGCCTTTATTGATCAGCCATTTGAAGAAGATACTTGTCGCTGCCACTTCACTTTTGTACAAGAAAGTACTTCGGTCACTGATCCACAATTAATCTATAAGTACCAGTGGTTTGTAGGAGAAAGAACACCTTCCAATTTCACTAGCATTCCTGATGCCACCGGAGAGGTATACTGGCCTAAGCATGAAGATGTTGGTAAAATTTTGAAAGTGGAATGCACTCCAATATTAGGAGAAATGGAGTACCCTCCTATTTTTGCTATATCTTCATTGGTAAAACCAGGTACTGGAACTCCCAAGGTTGTGAACCTTGATGTTCATGGAGAACTGGTAGAGGGAAATACTTTAAGGGGCCATGCAGAGATTGCGTGGTGTGGCGGCACTCCAGCAAAAGGTGTTTCTAGTTGGTTGAGGAGAAAATGGAACAGCAGTCCGGTGGTTATTGCTGGAGCTGAAGATGAGGAGTATAAGTTGACCATAGATGATATTGGTACAAGTTTGGTTTTCATGTATACGCCGGTGACAGAAGAGGGTGCCAAAGGAGAACCCCATTATAAATACACCGATTTTGTAAAATCTGCACCTCCATCAGTCAGTAACGTTCAAATCCTCGGAGACCTTGTTGAAGGAAGTACCATCAGAGGCATTGGTGATTACTTTGGAGGAAGAGAGGGCCCCAGCAAGTTTGAATGGTTATGTGAGCGTAGCAACACTGGAGACTTTGTTTTGGTATCAACCGGTACATCTGAGTATACTTTAAGCAAGGAAGATGTTGGGCATCGCTTGGCTTTTGCATATATACCCATCAATTTTGAAGGGCAAGAAGGGGAATCTGTTTCTGTACTGTCCGATGTGGTGAAGCAAGCACCTCCAAAGGTATTAAATCTGAAGATTATAGGTGATATGAGGGAGAACAGTAAGGTTACTGCCTCTGGTGTTGTCACTGGAGGAACTGAAGGGTCTAGCAGGGTACAGTGGTTTAAAACAAGTTTCTCAACTGTAGTGGGTGAGAAAGGTCTTGAAGCATTGAGCACATCCAAGATTGCCAAGGCATTTCGCATACCATTGGGAGCTGTTGGTTATTACATTGTTGCAAAATTCACTCCTATGACCCCAGATGGTGAATCTGGTGACCCAGCATATGTTATATCAGATACAACAGTTGAGACTCTGCCTCCTAGCCTGAACTTCTTATCTATTACTGGTGATTACTCAGAAGGTGGAATATTGACTGGATCATATGGTTATATCGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATATTCATGAGGTTGAAACCGACGCTGGATCTCTAATACCTGAGGTCACAGGGCTTCTTCAGTATCGTATTACAAAAAACGCAATCGGTAAATTTATTTCATTTCAATGTACCCCAGTGCGTGATGATGGGATTGTGGGTGAACCAACAACGTGCATGGGCCAGGAACGTATTCGCCCTGGGAGCCCCAGATTACTTTCTCTACGAATTGTTGGGGATGCCACTGAAGGTACTTCACTTACTGTTGACAAACAATACTGGGGCGGTGAAGAGGGAAATTCACTTTTCTACTGGTTCCGGAGTACTTCAGATGGAACTCCGGCGGAAATTAGGGGGGCAACTACTGCGTCATACACGCTCTCAATTGATGACATTGGCTTCTTTATCTCAGTGTCGTGCGAGCCTGTCAGAAGTGACTGGGCTCGTGGTCCTACTGTTCTATCCGAACAAATTGGACCTATAATACCTGGTCCCCCTACTTGCCACTCTTTGGAGTTTCTTGGTTCAATGATTGAAGGACAACGCTTGAGCTTTAATGCTTCTTATAGTGGAGGGGAGAAAGGAAATTGCTTCCATGAATGGTTTAGAGTGAAAAGTAATGGTGTCAAGGAGAAATTGAGTACTCATGATTTTCTGGATTTGACCCTTGATGACGTGGGAAAATGCATTGAACTTGTTTACACCCCTATGCGCAAGGATGGGATGAGAGGAAATCCTAAGAGTATAAAATCTGATGTGGTTGAGCCAGCGGATCCTGAAGGACTGGAGCTTATGATCCCTGATTGCTGTGAAGATGAAGAGTTGGTCCCAGAAAAAACGTACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACAAAAAATAAGCTGCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCGGTAAAACACTAACATATAAACCAGCACTTGAAGATGTTGGGGCTTATTTGGCCCTTTATTGGGTACCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAGTTTGCAACTCTCCAGTTGCACCAGCTCTTCCTGTGGTTTCTAACGTTCGTGTGAAGGAGGTGTCTCTCTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGTCTTTTTAGCTGGTATAGAGAAACTAATGAAGGAACTATCAGTCTTATAAATGGGGCCAACTCTCGAACTTATGAAGTCACCGATGCAGACTACAATTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGATTGTCTGAGCCGACTGACATTATTCTTCCTGAGCTTCCAAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACAGTTGTTGAAGTGATCCCCGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTTGTTTCTTCAGCTGTGGGAGATGATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAGAATGCGATTAGAGGATGTTGGGCGCTCTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGGATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCGTTTATAGTGGAGGGAAAGAAGGAAAAAGTAAAATACAGTGGCTGAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCTGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGACGATGTAGGATACAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGCAACCTGTGTCAGCATCCACAGAGCCGATTACAGTTGAGCCTGATGTTCTTAAAGAAGTGAAACAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGTGTTGTGTGACAAGGACCAATCTACCAAAAAGACTACTGCGGTAGGAACTCTTGAGAGAAGAACTCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCCGGTTCCAAGACTTCTTTCCCAACTACTGAAATTCGTGGAACCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGACTGAGAATTGTAGTCGACAGTGAGAGTGAGGTAGACTTGATGGTGCAGTCCAGGCACCTTAGAGATGTGATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCCCTCAATACTCTCCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1713

Amino Acids

186.91

Weight (kDa)

6.09

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	342 - 378	1.2e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	497 - 585	6.2e-11	AIR9 A9 domain
IG_AIR9	PF23197	598 - 682	1e-21	AIR9 A9 domain
IG_AIR9	PF23197	694 - 780	3.5e-33	AIR9 A9 domain
IG_AIR9	PF23197	790 - 881	6.4e-15	AIR9 A9 domain
IG_AIR9	PF23197	892 - 978	1.9e-22	AIR9 A9 domain
IG_AIR9	PF23197	992 - 1071	5.7e-21	AIR9 A9 domain
IG_AIR9	PF23197	1086 - 1168	3.7e-24	AIR9 A9 domain
IG_AIR9	PF23197	1183 - 1271	1.4e-15	AIR9 A9 domain
IG_AIR9	PF23197	1296 - 1364	1.1e-16	AIR9 A9 domain
IG_AIR9	PF23197	1486 - 1571	7.3e-21	AIR9 A9 domain
PH_AIR9	PF23218	1601 - 1697	4.1e-52	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	2046, 3983, 4889
Acc16I	TGCGCA	2 cut(s)	1262, 3467
Acc36I	ACCTGC	1 cut(s)	4318
Acc65I	GGTACC	1 cut(s)	3772
AccB1I	GGYRCC	3 cut(s)	2024, 3772, 5040
AccB7I	CCANNNNNTGG	3 cut(s)	341, 1778, 3265
AccI	GTMKAC	6 cut(s)	1153, 1662, 2003, 2243, 5001, 5019
AccIII	TCCGGA	1 cut(s)	3072
AciI	CCGC	8 cut(s)	712, 722, 1869, 3039, 3098, 3524, 3708, 4832
AclI	AACGTT	3 cut(s)	1433, 2091, 3861
AclWI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3544, 3667, 4192, 4783
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	8 cut(s)	883, 1182, 1692, 2588, 2867, 3052, 4784, 4926
AgeI	ACCGGT	1 cut(s)	2228
AhlI	ACTAGT	2 cut(s)	698, 3808
AjiI	CACGTC	2 cut(s)	1059, 3430
AjuI	GAANNNNNNNTTGG	4 cut(s)	176, 208, 4895, 4927
Alw21I	GWGCWC	1 cut(s)	2525
Alw26I	GTCTC	8 cut(s)	307, 378, 613, 857, 2100, 2202, 2651, 3885
AlwI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3544, 3667, 4192, 4783
AlwNI	CAGNNNCTG	3 cut(s)	89, 1778, 4558
Ama87I	CYCGRG	4 cut(s)	205, 380, 1332, 4202
Aor13HI	TCCGGA	1 cut(s)	3072
ApaI	GGGCCC	1 cut(s)	2168
ApeKI	GCWGC	7 cut(s)	89, 746, 1166, 1274, 1421, 1533, 3652
ApoI	RAATTY	8 cut(s)	883, 1182, 1692, 2588, 2867, 3052, 4784, 4926
AseI	ATTAAT	1 cut(s)	1583
AsiGI	ACCGGT	1 cut(s)	2228
Asp700I	GAANNNNTTC	2 cut(s)	1621, 2946
Asp718I	GGTACC	1 cut(s)	3772
AspLEI	GCGC	3 cut(s)	1263, 3468, 4359
AsuC2I	CCSGG	2 cut(s)	493, 4896
AsuII	TTCGAA	1 cut(s)	999
AvaI	CYCGRG	4 cut(s)	205, 380, 1332, 4202
AvaII	GGWCC	9 cut(s)	148, 469, 1295, 3203, 3230, 3245, 3580, 4430, 4807
AxyI	CCTNAGG	2 cut(s)	830, 2817
BaeGI	GKGCMC	1 cut(s)	2168
BaeI	ACNNNNGTAYC	4 cut(s)	2453, 2486, 2637, 2670
BamHI	GGATCC	1 cut(s)	3526
BanI	GGYRCC	3 cut(s)	2024, 3772, 5040
BanII	GRGCYC	4 cut(s)	146, 2168, 2963, 3199
BauI	CACGAG	1 cut(s)	3198
BbsI	GAAGAC	2 cut(s)	319, 669
Bbv12I	GWGCWC	1 cut(s)	2525
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	7 cut(s)	76, 758, 1153, 1286, 1433, 1520, 3639
BceAI	ACGGC	2 cut(s)	1392, 4020
BciVI	GTATCC	1 cut(s)	4637
BclI	TGATCA	2 cut(s)	1504, 5067
BcnI	CCSGG	2 cut(s)	493, 4896
BcoDI	GTCTC	8 cut(s)	307, 378, 613, 857, 2100, 2202, 2651, 3885
BcuI	ACTAGT	2 cut(s)	698, 3808
BfmI	CTRYAG	6 cut(s)	354, 453, 642, 1154, 2490, 4330
BfoI	RGCGCY	1 cut(s)	4360
BfuAI	ACCTGC	1 cut(s)	4318
BfuI	GTATCC	1 cut(s)	4637
BglII	AGATCT	2 cut(s)	662, 1324
BlpI	GCTNAGC	2 cut(s)	4314, 4407
BmcAI	AGTACT	4 cut(s)	697, 1561, 3079, 3397
Bme18I	GGWCC	9 cut(s)	148, 469, 1295, 3203, 3230, 3245, 3580, 4430, 4807
BmeT110I	CYCGRG	4 cut(s)	205, 380, 1332, 4202
BmgBI	CACGTC	2 cut(s)	1059, 3430
BmrI	ACTGGG	4 cut(s)	29, 2885, 3043, 3202
BmsI	GCATC	8 cut(s)	536, 1636, 2278, 2983, 4009, 4131, 4718, 4990
BmuI	ACTGGG	4 cut(s)	29, 2885, 3043, 3202
BoxI	GACNNNNGTC	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	319, 669
BplI	GAGNNNNNCTC	6 cut(s)	1085, 1117, 4198, 4230, 4840, 4872
BpmI	CTGGAG	9 cut(s)	147, 1458, 1860, 1959, 2226, 2457, 3560, 3813, 4487
Bpu10I	CCTNAGC	3 cut(s)	1077, 1671, 4122
Bpu1102I	GCTNAGC	2 cut(s)	4314, 4407
Bpu14I	TTCGAA	1 cut(s)	999
BpuEI	CTTGAG	5 cut(s)	839, 1241, 3322, 4865, 5102
BpuMI	CCSGG	2 cut(s)	493, 4896
BsaAI	YACGTR	1 cut(s)	4511
BsaI	GGTCTC	2 cut(s)	378, 2100
BsaJI	CCNNGG	9 cut(s)	23, 73, 1788, 2101, 2538, 2953, 2954, 4442, 4598
BsaWI	WCCGGW	5 cut(s)	471, 1652, 1924, 2228, 3072
Bse118I	RCCGGY	2 cut(s)	2008, 2228
Bse21I	CCTNAGG	2 cut(s)	830, 2817
Bse3DI	GCAATG	3 cut(s)	331, 1460, 3665
BseAI	TCCGGA	1 cut(s)	3072
BseDI	CCNNGG	9 cut(s)	23, 73, 1788, 2101, 2538, 2953, 2954, 4442, 4598
BseMI	GCAATG	3 cut(s)	331, 1460, 3665
BseRI	GAGGAG	5 cut(s)	1253, 1918, 1967, 3623, 5105
BseSI	GKGCMC	1 cut(s)	2168
BseXI	GCAGC	7 cut(s)	76, 758, 1153, 1286, 1433, 1520, 3639
BseYI	CCCAGC	2 cut(s)	2168, 2626
BsgI	GTGCAG	3 cut(s)	1350, 2055, 5051
BshNI	GGYRCC	3 cut(s)	2024, 3772, 5040
BshTI	ACCGGT	1 cut(s)	2228
BsiHKAI	GWGCWC	1 cut(s)	2525
BsiHKCI	CYCGRG	4 cut(s)	205, 380, 1332, 4202
BsiSI	CCGG	9 cut(s)	472, 492, 1653, 1925, 2009, 2229, 3073, 3095, 4896
BslFI	GGGAC	4 cut(s)	30, 134, 3231, 3566
BsmAI	GTCTC	8 cut(s)	307, 378, 613, 857, 2100, 2202, 2651, 3885
BsmFI	GGGAC	4 cut(s)	30, 134, 3231, 3566
BsmI	GAATGC	3 cut(s)	1638, 1712, 4341
Bso31I	GGTCTC	2 cut(s)	378, 2100
BsoBI	CYCGRG	4 cut(s)	205, 380, 1332, 4202
Bsp119I	TTCGAA	1 cut(s)	999
Bsp120I	GGGCCC	1 cut(s)	2164
Bsp1286I	GDGCHC	5 cut(s)	146, 2168, 2525, 2963, 3199
Bsp13I	TCCGGA	1 cut(s)	3072
Bsp1407I	TGTACA	1 cut(s)	1549
Bsp1720I	GCTNAGC	2 cut(s)	4314, 4407
BspACI	CCGC	8 cut(s)	712, 722, 1869, 3039, 3098, 3524, 3708, 4832
BspEI	TCCGGA	1 cut(s)	3072
BspHI	TCATGA	3 cut(s)	2749, 2782, 3400
BspMAI	CTGCAG	2 cut(s)	358, 457
BspMI	ACCTGC	1 cut(s)	4318
BspPI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3544, 3667, 4192, 4783
BspQI	GCTCTTC	1 cut(s)	3849
BspT104I	TTCGAA	1 cut(s)	999
BspT107I	GGYRCC	3 cut(s)	2024, 3772, 5040
BspTNI	GGTCTC	2 cut(s)	378, 2100
BsrDI	GCAATG	3 cut(s)	331, 1460, 3665
BsrFI	RCCGGY	2 cut(s)	2008, 2228
BsrGI	TGTACA	1 cut(s)	1549
BssAI	RCCGGY	2 cut(s)	2008, 2228
BssECI	CCNNGG	9 cut(s)	23, 73, 1788, 2101, 2538, 2953, 2954, 4442, 4598
BssNAI	GTATAC	3 cut(s)	1663, 2004, 2244
BssSI	CACGAG	1 cut(s)	3198
BssT1I	CCWWGG	3 cut(s)	73, 1788, 2538
Bst1107I	GTATAC	3 cut(s)	1663, 2004, 2244
Bst2BI	CACGAG	1 cut(s)	3198
Bst6I	CTCTTC	6 cut(s)	1118, 2013, 2152, 3039, 3567, 3849
BstAPI	GCANNNNNTGC	4 cut(s)	233, 1856, 3119, 3812
BstAUI	TGTACA	1 cut(s)	1549
BstBAI	YACGTR	1 cut(s)	4511
BstBI	TTCGAA	1 cut(s)	999
BstEII	GGTNACC	2 cut(s)	459, 2621
BstENI	CCTNNNNNAGG	1 cut(s)	1487
BstH2I	RGCGCY	1 cut(s)	4360
BstHHI	GCGC	3 cut(s)	1263, 3468, 4359
BstMAI	GTCTC	8 cut(s)	307, 378, 613, 857, 2100, 2202, 2651, 3885
BstMWI	GCNNNNNNNGC	9 cut(s)	233, 1856, 2958, 3119, 3758, 3812, 4228, 4412, 5038
BstNSI	RCATGY	1 cut(s)	1421
BstPAI	GACNNNNGTC	1 cut(s)	474
BstPI	GGTNACC	2 cut(s)	459, 2621
BstSFI	CTRYAG	6 cut(s)	354, 453, 642, 1154, 2490, 4330
BstSLI	GKGCMC	1 cut(s)	2168
BstV1I	GCAGC	7 cut(s)	76, 758, 1153, 1286, 1433, 1520, 3639
BstV2I	GAAGAC	2 cut(s)	319, 669
BstX2I	RGATCY	5 cut(s)	662, 1324, 2804, 3526, 3659
BstYI	RGATCY	5 cut(s)	662, 1324, 2804, 3526, 3659
BstZ17I	GTATAC	3 cut(s)	1663, 2004, 2244
Bsu36I	CCTNAGG	2 cut(s)	830, 2817
BsuI	GTATCC	1 cut(s)	4637
BtgZI	GCGATG	1 cut(s)	2255
BtrI	CACGTC	2 cut(s)	1059, 3430
BveI	ACCTGC	1 cut(s)	4318
CaiI	CAGNNNCTG	3 cut(s)	89, 1778, 4558
CciI	TCATGA	3 cut(s)	2749, 2782, 3400
CfoI	GCGC	3 cut(s)	1263, 3468, 4359
Cfr10I	RCCGGY	2 cut(s)	2008, 2228
CseI	GACGC	3 cut(s)	1266, 2807, 3111
CsiI	ACCWGGT	3 cut(s)	118, 1771, 3241
CspAI	ACCGGT	1 cut(s)	2228
CspCI	CAANNNNNGTGG	4 cut(s)	844, 879, 2475, 2510
DraI	TTTAAA	1 cut(s)	2473
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	6 cut(s)	1118, 2013, 2152, 3039, 3567, 3849
EarI	CTCTTC	6 cut(s)	1118, 2013, 2152, 3039, 3567, 3849
EciI	GGCGGA	1 cut(s)	3113
Eco130I	CCWWGG	3 cut(s)	73, 1788, 2538
Eco147I	AGGCCT	2 cut(s)	68, 1496
Eco24I	GRGCYC	4 cut(s)	146, 2168, 2963, 3199
Eco31I	GGTCTC	2 cut(s)	378, 2100
Eco32I	GATATC	1 cut(s)	4256
Eco47I	GGWCC	9 cut(s)	148, 469, 1295, 3203, 3230, 3245, 3580, 4430, 4807
Eco81I	CCTNAGG	2 cut(s)	830, 2817
Eco88I	CYCGRG	4 cut(s)	205, 380, 1332, 4202
Eco91I	GGTNACC	2 cut(s)	459, 2621
EcoNI	CCTNNNNNAGG	1 cut(s)	1487
EcoO109I	RGGNCCY	3 cut(s)	989, 2164, 2165
EcoO65I	GGTNACC	2 cut(s)	459, 2621
EcoRV	GATATC	1 cut(s)	4256
EcoT14I	CCWWGG	3 cut(s)	73, 1788, 2538
EcoT22I	ATGCAT	2 cut(s)	1385, 3443
EcoT38I	GRGCYC	4 cut(s)	146, 2168, 2963, 3199
ErhI	CCWWGG	3 cut(s)	73, 1788, 2538
FalI	AAGNNNNNCTT	6 cut(s)	1451, 1483, 1481, 1513, 1606, 1638
FaqI	GGGAC	4 cut(s)	30, 134, 3231, 3566
FauNDI	CATATG	3 cut(s)	2632, 2731, 4417
FbaI	TGATCA	2 cut(s)	1504, 5067
FblI	GTMKAC	6 cut(s)	1153, 1662, 2003, 2243, 5001, 5019
FriOI	GRGCYC	4 cut(s)	146, 2168, 2963, 3199
FspI	TGCGCA	2 cut(s)	1262, 3467
GlaI	GCGC	3 cut(s)	1262, 3467, 4358
GsaI	CCCAGC	2 cut(s)	2172, 2630
GsuI	CTGGAG	9 cut(s)	147, 1458, 1860, 1959, 2226, 2457, 3560, 3813, 4487
HaeII	RGCGCY	1 cut(s)	4360
HapII	CCGG	9 cut(s)	472, 492, 1653, 1925, 2009, 2229, 3073, 3095, 4896
HgaI	GACGC	3 cut(s)	1266, 2807, 3111
HhaI	GCGC	3 cut(s)	1263, 3468, 4359
Hin6I	GCGC	3 cut(s)	1261, 3466, 4357
HinP1I	GCGC	3 cut(s)	1261, 3466, 4357
HincII	GTYRAC	4 cut(s)	1145, 1965, 3022, 5002
HindII	GTYRAC	4 cut(s)	1145, 1965, 3022, 5002
HindIII	AAGCTT	2 cut(s)	614, 4763
HpaII	CCGG	9 cut(s)	472, 492, 1653, 1925, 2009, 2229, 3073, 3095, 4896
Hpy99I	CGWCG	1 cut(s)	2801
HpyF10VI	GCNNNNNNNGC	9 cut(s)	233, 1856, 2958, 3119, 3758, 3812, 4228, 4412, 5038
HspAI	GCGC	3 cut(s)	1261, 3466, 4357
Kpn2I	TCCGGA	1 cut(s)	3072
KpnI	GGTACC	1 cut(s)	3776
Ksp22I	TGATCA	2 cut(s)	1504, 5067
LguI	GCTCTTC	1 cut(s)	3849
LmnI	GCTCC	8 cut(s)	16, 1086, 1940, 2561, 2958, 3541, 4331, 4960
Lsp1109I	GCAGC	7 cut(s)	76, 758, 1153, 1286, 1433, 1520, 3639
LweI	GCATC	8 cut(s)	536, 1636, 2278, 2983, 4009, 4131, 4718, 4990
MabI	ACCWGGT	3 cut(s)	118, 1771, 3241
MfeI	CAATTG	3 cut(s)	336, 3138, 4030
MflI	RGATCY	5 cut(s)	662, 1324, 2804, 3526, 3659
MhlI	GDGCHC	5 cut(s)	146, 2168, 2525, 2963, 3199
MmeI	TCCRAC	2 cut(s)	906, 3598
Mph1103I	ATGCAT	2 cut(s)	1385, 3443
MroI	TCCGGA	1 cut(s)	3072
MroXI	GAANNNNTTC	2 cut(s)	1621, 2946
MseI	TTAA	8 cut(s)	1304, 1583, 1838, 2249, 2372, 2472, 3309, 4746
MslI	CAYNNNNRTG	5 cut(s)	1378, 1680, 2597, 2881, 3461
MspA1I	CMGCKG	4 cut(s)	308, 3524, 4277, 4406
MspI	CCGG	9 cut(s)	472, 492, 1653, 1925, 2009, 2229, 3073, 3095, 4896
MunI	CAATTG	3 cut(s)	336, 3138, 4030
Mva1269I	GAATGC	3 cut(s)	1638, 1712, 4341
MwoI	GCNNNNNNNGC	9 cut(s)	233, 1856, 2958, 3119, 3758, 3812, 4228, 4412, 5038
NciI	CCSGG	2 cut(s)	493, 4896
NdeI	CATATG	3 cut(s)	2632, 2731, 4417
NsbI	TGCGCA	2 cut(s)	1262, 3467
NsiI	ATGCAT	2 cut(s)	1385, 3443
NspI	RCATGY	1 cut(s)	1421
NspV	TTCGAA	1 cut(s)	999
PaeI	GCATGC	1 cut(s)	1421
PaeR7I	CTCGAG	2 cut(s)	205, 1332
PagI	TCATGA	3 cut(s)	2749, 2782, 3400
PasI	CCCWGGG	1 cut(s)	2954
PceI	AGGCCT	2 cut(s)	68, 1496
PciSI	GCTCTTC	1 cut(s)	3849
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	3 cut(s)	1638, 1712, 4341
PdmI	GAANNNNTTC	2 cut(s)	1621, 2946
PflMI	CCANNNNNTGG	3 cut(s)	341, 1778, 3265
PinAI	ACCGGT	1 cut(s)	2228
Ppu21I	YACGTR	1 cut(s)	4511
PshAI	GACNNNNGTC	1 cut(s)	474
PshBI	ATTAAT	1 cut(s)	1583
PsiI	TTATAA	3 cut(s)	2046, 3983, 4889
Psp1406I	AACGTT	3 cut(s)	1433, 2091, 3861
PspEI	GGTNACC	2 cut(s)	459, 2621
PspFI	CCCAGC	2 cut(s)	2168, 2626
PspOMI	GGGCCC	1 cut(s)	2164
PspXI	VCTCGAGB	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	358, 457
PstNI	CAGNNNCTG	3 cut(s)	89, 1778, 4558
PsuI	RGATCY	5 cut(s)	662, 1324, 2804, 3526, 3659
PvuII	CAGCTG	3 cut(s)	308, 4277, 4406
RseI	CAYNNNNRTG	5 cut(s)	1378, 1680, 2597, 2881, 3461
SalI	GTCGAC	1 cut(s)	5000
SapI	GCTCTTC	1 cut(s)	3849
SaqAI	TTAA	8 cut(s)	1304, 1583, 1838, 2249, 2372, 2472, 3309, 4746
ScaI	AGTACT	4 cut(s)	697, 1561, 3079, 3397
SduI	GDGCHC	5 cut(s)	146, 2168, 2525, 2963, 3199
SexAI	ACCWGGT	3 cut(s)	118, 1771, 3241
SfaNI	GCATC	8 cut(s)	536, 1636, 2278, 2983, 4009, 4131, 4718, 4990
SfcI	CTRYAG	6 cut(s)	354, 453, 642, 1154, 2490, 4330
Sfr274I	CTCGAG	2 cut(s)	205, 1332
SfuI	TTCGAA	1 cut(s)	999
SgrAI	CRCCGGYG	1 cut(s)	2008
SinI	GGWCC	9 cut(s)	148, 469, 1295, 3203, 3230, 3245, 3580, 4430, 4807
SlaI	CTCGAG	2 cut(s)	205, 1332
SmiMI	CAYNNNNRTG	5 cut(s)	1378, 1680, 2597, 2881, 3461
SmlI	CTYRAG	7 cut(s)	205, 854, 1220, 1332, 3301, 4844, 5117
SmoI	CTYRAG	7 cut(s)	205, 854, 1220, 1332, 3301, 4844, 5117
SpeI	ACTAGT	2 cut(s)	698, 3808
SphI	GCATGC	1 cut(s)	1421
SseBI	AGGCCT	2 cut(s)	68, 1496
SsiI	CCGC	8 cut(s)	712, 722, 1869, 3039, 3098, 3524, 3708, 4832
SspI	AATATT	2 cut(s)	1719, 2718
StuI	AGGCCT	2 cut(s)	68, 1496
StyI	CCWWGG	3 cut(s)	73, 1788, 2538
TaqII	GACCGA	2 cut(s)	136, 1555
TatI	WGTACW	8 cut(s)	695, 1549, 1559, 2332, 3077, 3395, 4236, 5096
TauI	GCSGC	3 cut(s)	714, 725, 1872
Tru1I	TTAA	8 cut(s)	1304, 1583, 1838, 2249, 2372, 2472, 3309, 4746
Tru9I	TTAA	8 cut(s)	1304, 1583, 1838, 2249, 2372, 2472, 3309, 4746
TseI	GCWGC	7 cut(s)	89, 746, 1166, 1274, 1421, 1533, 3652
TspGWI	ACGGA	2 cut(s)	285, 4938
Van91I	CCANNNNNTGG	3 cut(s)	341, 1778, 3265
VpaK11BI	GGWCC	9 cut(s)	148, 469, 1295, 3203, 3230, 3245, 3580, 4430, 4807
VspI	ATTAAT	1 cut(s)	1583
XagI	CCTNNNNNAGG	1 cut(s)	1487
XapI	RAATTY	8 cut(s)	883, 1182, 1692, 2588, 2867, 3052, 4784, 4926
XceI	RCATGY	1 cut(s)	1421
XhoI	CTCGAG	2 cut(s)	205, 1332
XmiI	GTMKAC	6 cut(s)	1153, 1662, 2003, 2243, 5001, 5019
XmnI	GAANNNNTTC	2 cut(s)	1621, 2946
ZrmI	AGTACT	4 cut(s)	697, 1561, 3079, 3397
Zsp2I	ATGCAT	2 cut(s)	1385, 3443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.