Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Forward (+)

1866125 .. 1873914

Gene Structure 7790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGTCTGCAGAGCGATAGCAAAGAGGGAGACCATCCGACTGGTACTGATTATCATAAAGGCCTTTCGTATTGTCTGATCTGTTGTAAGATGGTCGATCACATAATTTTAGAATGCCCCGACTGGTCAAAGGGATCTGGGATATATTGTGTTGTTTGTGAAGGCCCCTGTAAACTCTGTGATGACGAGCACCACCGCAAAAATCATTTTGAAACTATCATGTTTTGTGATATTTGTGGTGAACAGGCTACACACTGGTCTGATAACTGCTCCTATGGTACTGATTATCGTACTGCCAGGTGTGAGGATGCTTACGGTGACTCTGACATTGGTTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

4.77

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	3 cut(s)	46, 280, 292
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	61, 163
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	251, 329
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	2 cut(s)	42, 85
BciT130I	CCWGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	24
Bse1I	ACTGG	3 cut(s)	46, 128, 260
BseBI	CCWGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	34, 313
BseNI	ACTGG	3 cut(s)	46, 128, 260
BshFI	GGCC	2 cut(s)	63, 165
BsiHKAI	GWGCWC	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	63, 165
Bso31I	GGTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	78, 97, 134
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	63, 165
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	46, 128, 260
BssMI	GATC	3 cut(s)	78, 97, 134
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	34, 313
BstKTI	GATC	3 cut(s)	81, 100, 137
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	3 cut(s)	78, 97, 134
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	63, 165
BtsCI	GGATG	2 cut(s)	34, 313
BtsIMutI	CAGTG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	45, 279, 291
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	3 cut(s)	63, 165, 248
CviKI_1	RGCY	3 cut(s)	63, 165, 248
CviQI	GTAC	3 cut(s)	45, 279, 291
DpnI	GATC	3 cut(s)	80, 99, 136
DpnII	GATC	3 cut(s)	78, 97, 134
Eco147I	AGGCCT	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	1 cut(s)	223
FaiI	YATR	5 cut(s)	57, 104, 145, 221, 276
FatI	CATG	1 cut(s)	219
FokI	GGATG	2 cut(s)	21, 320
HaeIII	GGCC	2 cut(s)	63, 165
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	251, 329
Hpy166II	GTNNAC	2 cut(s)	173, 242
Hpy188I	TCNGA	4 cut(s)	39, 78, 262, 325
Hpy8I	GTNNAC	2 cut(s)	173, 242
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	78, 97, 134
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	27, 109, 123, 181, 230, 241, 283, 310
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	3 cut(s)	80, 99, 136
MboI	GATC	3 cut(s)	78, 97, 134
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	19, 298
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	78, 97, 134
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	3 cut(s)	46, 280, 292
RsaNI	GTAC	3 cut(s)	45, 279, 291
Sau3AI	GATC	3 cut(s)	78, 97, 134
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	105
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	105
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
TspRI	CASTG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.