Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Reverse (-)

12200194 .. 12213623

Gene Structure 13430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5136 bp

ATGGAGGACAATGTAGACCAACCAGGCAAAGACCCAGTTGAGAGTCCCCAAGTTTCTGAGAAGCAGGCCTCTGTTGGTTCATCAGAAACTGCAAAAAGAGTTACCAAGACAGTGAAACCTGGGGCTTCAGTGACATCGAAGGCCTCGGTTCCCATTAGTAGTGTTAGAAAGAAAGTAGAGGCGAAAAGTGGTTTGGATTCTAGCTCGAGTGCAACGAAGTCAAGTGCAACTGGGACTTCCAGAAGTTTGAATTCAGTTCCAGTAGCAAGGCGAAACAGCACTGGTGGTTTGCCTCAGAAGCCATCAGTCTCCACTGCAAGACAGCAGAGCAATGCCACTCCAATTGCAGGCAATAAGTCTGCAGACCCTGTAAGGCGGTCTCTTCCAGAGCTTAGGAGAAGTTCTCTGCCTTCAGTAGTTACAAAATCAACCAGTGTTTCACAGGCTGTAAAGTTGTCTGCCGGGTCACCATTGGACCGGAGTCTGAATAAACCATCGGGTTCTCTTGCGAGTAGACAGGAGACTGTCAGGAAGCCTTCTGTCAAGCCAGCATCGTCCGTTTCATCTTCGTCTTCAAGGATGACAACTTCATTGGACAGTAGTGCTAGTAGTGGAGTCAGGAAGTCAGTCTCAAAGCTTTCTTCCTCATCAGCTCGATCACCTACAGTTACCAGTGGACTGAGATCTGGGTCTTTGTCTTCGTCTATGAATAGTAGTGCTAGTTTATCTGGACGCAGGAAAGCTGCAACACCTCAAGGCCGGGATTCTCGGTTTATTGTTCTTCCAAAGGTGGAAATCAAAGCTGGTGATGATCTGAGGTTGGACCTTAGGGGTCACAGAGTTCGCAGTCTCAAGGCCAGTGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTCAGAGATAATCTTTTATCTACGTTGGAAGGGGTTGAAATACTGACGAGAGTAAAGGTTCTTGATTTGAGTTTCAATGATTTCAAAGGGCCTGGATTTGAACCTCTTGAAAATTGCAGAGTCTTACAGCAACTTTATCTGGCTGGAAATCAAATCACGTCGCTTGCAAGCCTCCCTCAGCTCCCCAATTTGGAGTTCCTCTCTGTTGCTCAAAATAAGTTGAAGAATCTTATAATGGCAAGTCAACCTCGTCTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGATTCCCGTATTTACCGGTTCTTGAGCATTTACGAGTGGAGGAGAATCCTATACTAAAAATGCCTCATTTAGAAGCAGCTTCCATTTTGCTTGCTGGTCCTACCTTAAAAAAGTTCAATGACAGAGATCTTTCCCGAGAGCAGGTAGCAATTGCAAAGCGTTATCCTGCACACACATCATTATGCATTAGAGATGGTTGGGAGTTTTGCCGTCCAGAGCATGCAGCAGACTCAACGTTTCGCTTTCTAGTTGAGCAATGGAAGGATAACTTGCCTCCGGGCTTCCTGGTCAAGGAGGCCTTTATTGATCAGCCATTTGAAGAAGATACTTGTCGCTGTCACTTCACTTTTGTACAAGACAGTACTTTGGTCACTGATCCACAATTAATCTTAAAATATCAGTGGTTTGTAGGAGAAAGAACACCTTCCAATTTCACCAGCATTCCTGATGCCACTGGAGAGGTATACTGGCCTAAGCATGAAGATATTGGTAAAATTTTGAAAGTGGAATGTACTCCAATATTAGGAGAAATGGAGTACCCTCCTATTTTTGCTATATCTTCATCAGTTTCACCAGGTACTGGAATTCCCAAGGTTGTGAACCTTGATGTTTGTGGAGAACTGGTGGAGGGAAATATTATAAGGGGCCATGCAGAGATTGCGTGGTGTGGCGGCACTCCAGCAAAAGGTGTTTCTAGTTGGTTGAGGAGGAAATGGAACAGCAGTCCTGTGGTTATTGCTGGAGCTGAAGATGAGGAGTATAAGTTGACCATAGATGATATTGATACAAGTTTGGTTTTCATGTATACACCAGTGACAGAAGAAGGTGCCAAAGGAGAACCCCATTATAAATACACCGACTTTGTAAAATCAGCACCTCCGTCGGTCAATAACGTTCAAATCGTTGGAGATCTAGTTGAAGGAACTACCATCAGAGGAGTTGGTGATTACTTTGGAGGAAGAGAGGGCCCTAGCAAGTTTGAATGGTTATGTGAGCATAGCGACAGTGGAAACTTTGTTTTGGTATCAACTGGTACATCTGAGTATACTTTGAGTAAGGAGGATGTTGGGCATCGCTTGGCTTTTGCATATATACCTATCAATTTTGAAGGGCAAGAAGGGGAATCGGTTTCAATACTGTCCGATGTGGTGAAGCAAGCACCTCCGAAGGTATTAAATCTGAAGATAATAGGTGATATGAAGGAGAACAGTAAGGTTACTGCCACTGGTATTGTCACTGGAGGAACTGAAGGTTCTAGCAGGGTACAGTGGTTTAAAACAAGGTTCTCAACTTTGGAGGGTGAGAAAGGTCTTGAAGCGTTGAGCACATCCAAGATTGCCAAGGCGTTTCGCATACCATTGGGAGCTGTTGGCTATTACATTGTTGCAAAATTCACTCCTATGACTCCAGATGGTGAATCTGGTGACCCAGCATATGTTATTTCAGATACAGCAGTTGAGACTCTGCCTCCTAGCCTGAATTTCTTATCTATTACTGGTGATTACTCGGAAGGTGGAATATTGACTGGATCATATGGTTATATCGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATATCCATGAGGTTGAAACTGATTCCGGATCTCTAATACCTGAGGTCACAGGGCTTCTTCAGTATCGTATTACAAAAGATGCAATTGGTAAATTCATTTCATTCCAATGTACCCCAGTGCGTGATGATGGGATTGTGGGTGAACCAACAATGTGCATGGGCCAGGAACGTGTTCGCCCTGGAAGCCCTAGATTGCTTTCCCTACGAATTGTCGGGGATGCCACTGAAGGTAGTTCACTTACTGTTGACAAAAAATATTGGGGCGGTGAAGAGGGAGATTCACTTTTCTACTGGTTCCGGAGTACTTCAGATGGAACTCCAACGGAAATTAGGGGTGCAACTACTGCTTCATACATGCTCTCAATTGATGACATTGGCTTCTTTATCTCAGTGTCGTGTGAGCCTGTCAGAAGTGACTGGGCACGTGGTCCTACTGTTCTTTCCGAACAAATTGGACCTATAATACCTGGTCCCCCAACTTGCCACTCTTTGGAGTTTCTTGGTTCAATGATTGAAGGACAACGCTTGAGCTTTATTGCTTCTTATACTGGAGGGGAGAAAGGAAATTGCTTCCATGAATGGTTTAGAGTGAAAAGTAATGGTGTCAAGGAGAAATTGAGTACTCAGGATTTTCTAGATTTGACTCTTGATGATGTGGGAAGATGCATTGAACTTGTTTACACCCCTATGCGCAAGGATGGGACGAGAGGAAATCCTAAGAGCATAAACTCTGATGTGGTTGGCCCTGCGGATCCTGAAGGACTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACAAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCAGTAAAACACTAACATATAAACCAGCACTTGAAGATGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAATGATGGTAAATGTGGGAAGGCACTAGTTGCGATTTGCAACTCTCTGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGCGAAGGAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATGATGGAACTATCAATCTTATTAATGGGGCTAATTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCTGAGAGTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACAGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGCGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGGATGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATTCCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATACAGGCTTGTAGCCATTTACACTCCTGTTAGAGAGGATGGAGTGGAGGGTTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCGGTAGGAACTCTTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1712

Amino Acids

187.17

Weight (kDa)

6.0

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	341 - 376	4.2e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	496 - 584	1.2e-09	AIR9 A9 domain
IG_AIR9	PF23197	597 - 681	4.2e-20	AIR9 A9 domain
IG_AIR9	PF23197	693 - 779	1e-33	AIR9 A9 domain
IG_AIR9	PF23197	789 - 880	5.4e-14	AIR9 A9 domain
IG_AIR9	PF23197	891 - 977	8.4e-23	AIR9 A9 domain
IG_AIR9	PF23197	991 - 1070	6.8e-21	AIR9 A9 domain
IG_AIR9	PF23197	1085 - 1167	3.4e-24	AIR9 A9 domain
IG_AIR9	PF23197	1182 - 1270	3.9e-16	AIR9 A9 domain
IG_AIR9	PF23197	1295 - 1363	1.1e-16	AIR9 A9 domain
IG_AIR9	PF23197	1485 - 1570	6.2e-20	AIR9 A9 domain
PH_AIR9	PF23218	1600 - 1696	4.5e-52	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	1130, 1835, 2043, 4886
Acc16I	TGCGCA	1 cut(s)	3464
Acc36I	ACCTGC	2 cut(s)	1327, 4315
AccB1I	GGYRCC	3 cut(s)	2021, 3769, 5037
AccB7I	CCANNNNNTGG	2 cut(s)	1775, 3262
AccI	GTMKAC	8 cut(s)	15, 514, 1150, 1659, 2000, 2240, 4998, 5016
AccIII	TCCGGA	2 cut(s)	2798, 3069
AciI	CCGC	5 cut(s)	376, 1866, 3036, 3521, 4829
AclI	AACGTT	2 cut(s)	1430, 2088
AclWI	GGATC	9 cut(s)	1565, 2731, 2809, 3518, 3531, 3664, 4189, 4780, 4812
AcvI	CACGTG	1 cut(s)	3197
AflIII	ACRYGT	1 cut(s)	2941
AgeI	ACCGGT	1 cut(s)	1210
AhlI	ACTAGT	1 cut(s)	3805
AjiI	CACGTC	1 cut(s)	1056
AjuI	GAANNNNNNNTTGG	6 cut(s)	176, 208, 1076, 1108, 4892, 4924
Alw21I	GWGCWC	1 cut(s)	2522
Alw26I	GTCTC	7 cut(s)	313, 384, 515, 634, 854, 2648, 3882
AlwI	GGATC	9 cut(s)	1565, 2731, 2809, 3518, 3531, 3664, 4189, 4780, 4812
AlwNI	CAGNNNCTG	3 cut(s)	89, 368, 1775
Ama87I	CYCGRG	3 cut(s)	205, 1329, 4595
Aor13HI	TCCGGA	2 cut(s)	2798, 3069
ApaI	GGGCCC	1 cut(s)	2165
ApeKI	GCWGC	4 cut(s)	743, 1163, 1271, 1418
ArsI	GACNNNNNNTTYG	2 cut(s)	3860, 3892
AseI	ATTAAT	2 cut(s)	1580, 3981
AsiGI	ACCGGT	1 cut(s)	1210
Asp700I	GAANNNNTTC	3 cut(s)	1618, 2943, 3576
AspLEI	GCGC	2 cut(s)	3465, 4356
AsuC2I	CCSGG	5 cut(s)	463, 761, 1473, 4596, 4597
AvaI	CYCGRG	3 cut(s)	205, 1329, 4595
AvaII	GGWCC	7 cut(s)	475, 823, 1292, 3200, 3227, 3242, 4427
AxyI	CCTNAGG	2 cut(s)	827, 2814
BaeGI	GKGCMC	3 cut(s)	2165, 3196, 3774
BaeI	ACNNNNGTAYC	4 cut(s)	2450, 2483, 2634, 2667
BamHI	GGATCC	1 cut(s)	3523
BanI	GGYRCC	3 cut(s)	2021, 3769, 5037
BanII	GRGCYC	1 cut(s)	2165
BbrPI	CACGTG	1 cut(s)	3197
BbsI	GAAGAC	2 cut(s)	564, 690
Bbv12I	GWGCWC	1 cut(s)	2522
BbvCI	CCTCAGC	1 cut(s)	1074
BbvI	GCAGC	4 cut(s)	730, 1150, 1283, 1430
BceAI	ACGGC	2 cut(s)	1389, 4017
BcgI	CGANNNNNNTGC	2 cut(s)	2058, 2092
BciVI	GTATCC	1 cut(s)	4634
BclI	TGATCA	2 cut(s)	1501, 5064
BcnI	CCSGG	5 cut(s)	463, 761, 1473, 4596, 4597
BcoDI	GTCTC	7 cut(s)	313, 384, 515, 634, 854, 2648, 3882
BcuI	ACTAGT	1 cut(s)	3805
BfmI	CTRYAG	3 cut(s)	360, 663, 1151
BfoI	RGCGCY	1 cut(s)	4357
BfuAI	ACCTGC	2 cut(s)	1327, 4315
BfuI	GTATCC	1 cut(s)	4634
BglII	AGATCT	3 cut(s)	683, 1321, 2104
BisI	GCNGC	5 cut(s)	744, 1164, 1272, 1419, 1867
BlpI	GCTNAGC	2 cut(s)	4311, 4404
BlsI	GCNGC	5 cut(s)	745, 1165, 1273, 1420, 1868
BmcAI	AGTACT	3 cut(s)	1558, 3076, 3394
Bme18I	GGWCC	7 cut(s)	475, 823, 1292, 3200, 3227, 3242, 4427
BmeT110I	CYCGRG	3 cut(s)	205, 1329, 4595
BmgBI	CACGTC	1 cut(s)	1056
BmrI	ACTGGG	4 cut(s)	29, 240, 2882, 3199
BmuI	ACTGGG	4 cut(s)	29, 240, 2882, 3199
BoxI	GACNNNNGTC	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	564, 690
BplI	GAGNNNNNCTC	6 cut(s)	388, 420, 1082, 1114, 4195, 4227
BpmI	CTGGAG	8 cut(s)	1671, 1857, 1956, 2454, 2586, 3342, 3557, 4484
Bpu10I	CCTNAGC	3 cut(s)	392, 1074, 1668
Bpu1102I	GCTNAGC	2 cut(s)	4311, 4404
BpuEI	CTTGAG	6 cut(s)	738, 836, 1238, 3319, 4862, 5099
BpuMI	CCSGG	5 cut(s)	463, 761, 1473, 4596, 4597
BsaAI	YACGTR	2 cut(s)	3197, 4508
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	7 cut(s)	119, 144, 1785, 2535, 2950, 4595, 4596
BsaWI	WCCGGW	4 cut(s)	477, 1210, 2798, 3069
BsaXI	ACNNNNNCTCC	8 cut(s)	1803, 1833, 1943, 1973, 2094, 2124, 2647, 2677
Bse118I	RCCGGY	1 cut(s)	1210
Bse21I	CCTNAGG	2 cut(s)	827, 2814
Bse3DI	GCAATG	3 cut(s)	337, 1457, 3662
BseAI	TCCGGA	2 cut(s)	2798, 3069
BseDI	CCNNGG	7 cut(s)	119, 144, 1785, 2535, 2950, 4595, 4596
BseMI	GCAATG	3 cut(s)	337, 1457, 3662
BseRI	GAGGAG	5 cut(s)	1250, 1915, 1964, 2145, 3620
BseSI	GKGCMC	3 cut(s)	2165, 3196, 3774
BseXI	GCAGC	4 cut(s)	730, 1150, 1283, 1430
BseYI	CCCAGC	1 cut(s)	2623
BsgI	GTGCAG	2 cut(s)	1347, 5048
BshNI	GGYRCC	3 cut(s)	2021, 3769, 5037
BshTI	ACCGGT	1 cut(s)	1210
BsiHKAI	GWGCWC	1 cut(s)	2522
BsiHKCI	CYCGRG	3 cut(s)	205, 1329, 4595
BsiSI	CCGG	8 cut(s)	462, 478, 760, 1211, 1472, 2799, 3070, 4596
BslFI	GGGAC	4 cut(s)	30, 247, 3228, 3487
BsmAI	GTCTC	7 cut(s)	313, 384, 515, 634, 854, 2648, 3882
BsmFI	GGGAC	4 cut(s)	30, 247, 3228, 3487
BsmI	GAATGC	1 cut(s)	1635
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	3 cut(s)	205, 1329, 4595
Bsp120I	GGGCCC	1 cut(s)	2161
Bsp1286I	GDGCHC	4 cut(s)	2165, 2522, 3196, 3774
Bsp13I	TCCGGA	2 cut(s)	2798, 3069
Bsp1407I	TGTACA	1 cut(s)	1546
Bsp1720I	GCTNAGC	2 cut(s)	4311, 4404
BspACI	CCGC	5 cut(s)	376, 1866, 3036, 3521, 4829
BspEI	TCCGGA	2 cut(s)	2798, 3069
BspHI	TCATGA	1 cut(s)	2746
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	1327, 4315
BspPI	GGATC	9 cut(s)	1565, 2731, 2809, 3518, 3531, 3664, 4189, 4780, 4812
BspQI	GCTCTTC	1 cut(s)	3846
BspT107I	GGYRCC	3 cut(s)	2021, 3769, 5037
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	3 cut(s)	337, 1457, 3662
BsrFI	RCCGGY	1 cut(s)	1210
BsrGI	TGTACA	1 cut(s)	1546
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	7 cut(s)	119, 144, 1785, 2535, 2950, 4595, 4596
BssNAI	GTATAC	3 cut(s)	1660, 2001, 2241
BssT1I	CCWWGG	2 cut(s)	1785, 2535
Bst1107I	GTATAC	3 cut(s)	1660, 2001, 2241
Bst6I	CTCTTC	5 cut(s)	387, 2149, 3036, 3846, 5115
BstAPI	GCANNNNNTGC	3 cut(s)	1853, 3116, 3809
BstAUI	TGTACA	1 cut(s)	1546
BstBAI	YACGTR	2 cut(s)	3197, 4508
BstEII	GGTNACC	2 cut(s)	465, 2618
BstENI	CCTNNNNNAGG	1 cut(s)	1484
BstH2I	RGCGCY	1 cut(s)	4357
BstHHI	GCGC	2 cut(s)	3465, 4356
BstMAI	GTCTC	7 cut(s)	313, 384, 515, 634, 854, 2648, 3882
BstNSI	RCATGY	2 cut(s)	1418, 3130
BstPAI	GACNNNNGTC	1 cut(s)	480
BstPI	GGTNACC	2 cut(s)	465, 2618
BstSFI	CTRYAG	3 cut(s)	360, 663, 1151
BstSLI	GKGCMC	3 cut(s)	2165, 3196, 3774
BstV1I	GCAGC	4 cut(s)	730, 1150, 1283, 1430
BstV2I	GAAGAC	2 cut(s)	564, 690
BstX2I	RGATCY	6 cut(s)	683, 1321, 2104, 2801, 3523, 3656
BstYI	RGATCY	6 cut(s)	683, 1321, 2104, 2801, 3523, 3656
BstZ17I	GTATAC	3 cut(s)	1660, 2001, 2241
Bsu36I	CCTNAGG	2 cut(s)	827, 2814
BsuI	GTATCC	1 cut(s)	4634
BtgZI	GCGATG	1 cut(s)	2252
BtrI	CACGTC	1 cut(s)	1056
BtsI	GCAGTG	2 cut(s)	312, 4281
BveI	ACCTGC	2 cut(s)	1327, 4315
CaiI	CAGNNNCTG	3 cut(s)	89, 368, 1775
CciI	TCATGA	1 cut(s)	2746
CfoI	GCGC	2 cut(s)	3465, 4356
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr9I	CCCGGG	1 cut(s)	4595
CseI	GACGC	1 cut(s)	741
CsiI	ACCWGGT	2 cut(s)	1768, 3238
CspAI	ACCGGT	1 cut(s)	1210
CspCI	CAANNNNNGTGG	6 cut(s)	325, 360, 841, 876, 2407, 2442
DraI	TTTAAA	1 cut(s)	2470
Eam1104I	CTCTTC	5 cut(s)	387, 2149, 3036, 3846, 5115
EarI	CTCTTC	5 cut(s)	387, 2149, 3036, 3846, 5115
Eco130I	CCWWGG	2 cut(s)	1785, 2535
Eco147I	AGGCCT	3 cut(s)	68, 143, 1493
Eco24I	GRGCYC	1 cut(s)	2165
Eco31I	GGTCTC	1 cut(s)	384
Eco32I	GATATC	1 cut(s)	4253
Eco47I	GGWCC	7 cut(s)	475, 823, 1292, 3200, 3227, 3242, 4427
Eco72I	CACGTG	1 cut(s)	3197
Eco81I	CCTNAGG	2 cut(s)	827, 2814
Eco88I	CYCGRG	3 cut(s)	205, 1329, 4595
Eco91I	GGTNACC	2 cut(s)	465, 2618
EcoNI	CCTNNNNNAGG	1 cut(s)	1484
EcoO109I	RGGNCCY	3 cut(s)	986, 2161, 2162
EcoO65I	GGTNACC	2 cut(s)	465, 2618
EcoRI	GAATTC	3 cut(s)	250, 1779, 4443
EcoRV	GATATC	1 cut(s)	4253
EcoT14I	CCWWGG	2 cut(s)	1785, 2535
EcoT22I	ATGCAT	2 cut(s)	1382, 3440
EcoT38I	GRGCYC	1 cut(s)	2165
ErhI	CCWWGG	2 cut(s)	1785, 2535
FalI	AAGNNNNNCTT	6 cut(s)	1448, 1480, 1478, 1510, 1603, 1635
FaqI	GGGAC	4 cut(s)	30, 247, 3228, 3487
FauNDI	CATATG	3 cut(s)	2629, 2728, 4414
FbaI	TGATCA	2 cut(s)	1501, 5064
FblI	GTMKAC	8 cut(s)	15, 514, 1150, 1659, 2000, 2240, 4998, 5016
Fnu4HI	GCNGC	5 cut(s)	744, 1164, 1272, 1419, 1867
FriOI	GRGCYC	1 cut(s)	2165
Fsp4HI	GCNGC	5 cut(s)	744, 1164, 1272, 1419, 1867
FspI	TGCGCA	1 cut(s)	3464
GlaI	GCGC	2 cut(s)	3464, 4355
GluI	GCNGC	5 cut(s)	744, 1164, 1272, 1419, 1867
GsaI	CCCAGC	1 cut(s)	2627
GsuI	CTGGAG	8 cut(s)	1671, 1857, 1956, 2454, 2586, 3342, 3557, 4484
HaeII	RGCGCY	1 cut(s)	4357
HapII	CCGG	8 cut(s)	462, 478, 760, 1211, 1472, 2799, 3070, 4596
HgaI	GACGC	1 cut(s)	741
HhaI	GCGC	2 cut(s)	3465, 4356
Hin6I	GCGC	2 cut(s)	3463, 4354
HinP1I	GCGC	2 cut(s)	3463, 4354
HincII	GTYRAC	4 cut(s)	1142, 1962, 3019, 4999
HindII	GTYRAC	4 cut(s)	1142, 1962, 3019, 4999
HindIII	AAGCTT	3 cut(s)	635, 3647, 4760
HpaII	CCGG	8 cut(s)	462, 478, 760, 1211, 1472, 2799, 3070, 4596
Hpy99I	CGWCG	2 cut(s)	1060, 2080
HpyCH4IV	ACGT	7 cut(s)	920, 1055, 1430, 2088, 2941, 3196, 4507
HpySE526I	ACGT	7 cut(s)	920, 1055, 1430, 2088, 2941, 3196, 4507
HspAI	GCGC	2 cut(s)	3463, 4354
Kpn2I	TCCGGA	2 cut(s)	2798, 3069
Ksp22I	TGATCA	2 cut(s)	1501, 5064
LguI	GCTCTTC	1 cut(s)	3846
LmnI	GCTCC	7 cut(s)	1083, 1937, 2558, 3538, 3930, 4328, 4957
Lsp1109I	GCAGC	4 cut(s)	730, 1150, 1283, 1430
MabI	ACCWGGT	2 cut(s)	1768, 3238
MaeII	ACGT	7 cut(s)	920, 1055, 1430, 2088, 2941, 3196, 4507
MfeI	CAATTG	4 cut(s)	342, 1344, 2856, 3135
MflI	RGATCY	6 cut(s)	683, 1321, 2104, 2801, 3523, 3656
MhlI	GDGCHC	4 cut(s)	2165, 2522, 3196, 3774
MmeI	TCCRAC	5 cut(s)	801, 903, 2080, 3116, 3595
Mph1103I	ATGCAT	2 cut(s)	1382, 3440
MroI	TCCGGA	2 cut(s)	2798, 3069
MroXI	GAANNNNTTC	3 cut(s)	1618, 2943, 3576
MseI	TTAA	7 cut(s)	1301, 1580, 1586, 2369, 2469, 3981, 4743
MslI	CAYNNNNRTG	4 cut(s)	1375, 2594, 2878, 3458
MspA1I	CMGCKG	1 cut(s)	4403
MspI	CCGG	8 cut(s)	462, 478, 760, 1211, 1472, 2799, 3070, 4596
MunI	CAATTG	4 cut(s)	342, 1344, 2856, 3135
Mva1269I	GAATGC	1 cut(s)	1635
NciI	CCSGG	5 cut(s)	463, 761, 1473, 4596, 4597
NdeI	CATATG	3 cut(s)	2629, 2728, 4414
NsbI	TGCGCA	1 cut(s)	3464
NsiI	ATGCAT	2 cut(s)	1382, 3440
NspI	RCATGY	2 cut(s)	1418, 3130
PaeI	GCATGC	1 cut(s)	1418
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	2746
PceI	AGGCCT	3 cut(s)	68, 143, 1493
PciSI	GCTCTTC	1 cut(s)	3846
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 2094, 4715
PctI	GAATGC	1 cut(s)	1635
PdmI	GAANNNNTTC	3 cut(s)	1618, 2943, 3576
PflMI	CCANNNNNTGG	2 cut(s)	1775, 3262
PinAI	ACCGGT	1 cut(s)	1210
PkrI	GCNGC	5 cut(s)	745, 1165, 1273, 1420, 1868
PmaCI	CACGTG	1 cut(s)	3197
PmlI	CACGTG	1 cut(s)	3197
Ppu21I	YACGTR	2 cut(s)	3197, 4508
PshAI	GACNNNNGTC	1 cut(s)	480
PshBI	ATTAAT	2 cut(s)	1580, 3981
PsiI	TTATAA	4 cut(s)	1130, 1835, 2043, 4886
Psp1406I	AACGTT	2 cut(s)	1430, 2088
PspCI	CACGTG	1 cut(s)	3197
PspEI	GGTNACC	2 cut(s)	465, 2618
PspFI	CCCAGC	1 cut(s)	2623
PspOMI	GGGCCC	1 cut(s)	2161
PspXI	VCTCGAGB	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	3 cut(s)	89, 368, 1775
PsuI	RGATCY	6 cut(s)	683, 1321, 2104, 2801, 3523, 3656
PvuII	CAGCTG	1 cut(s)	4403
RseI	CAYNNNNRTG	4 cut(s)	1375, 2594, 2878, 3458
SalI	GTCGAC	1 cut(s)	4997
SapI	GCTCTTC	1 cut(s)	3846
SaqAI	TTAA	7 cut(s)	1301, 1580, 1586, 2369, 2469, 3981, 4743
SatI	GCNGC	5 cut(s)	744, 1164, 1272, 1419, 1867
ScaI	AGTACT	3 cut(s)	1558, 3076, 3394
SduI	GDGCHC	4 cut(s)	2165, 2522, 3196, 3774
SexAI	ACCWGGT	2 cut(s)	1768, 3238
SfcI	CTRYAG	3 cut(s)	360, 663, 1151
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	7 cut(s)	475, 823, 1292, 3200, 3227, 3242, 4427
SlaI	CTCGAG	1 cut(s)	205
SmaI	CCCGGG	1 cut(s)	4597
SmiMI	CAYNNNNRTG	4 cut(s)	1375, 2594, 2878, 3458
SmlI	CTYRAG	7 cut(s)	205, 753, 851, 1217, 3298, 4841, 5114
SmoI	CTYRAG	7 cut(s)	205, 753, 851, 1217, 3298, 4841, 5114
SpeI	ACTAGT	1 cut(s)	3805
SphI	GCATGC	1 cut(s)	1418
SseBI	AGGCCT	3 cut(s)	68, 143, 1493
SsiI	CCGC	5 cut(s)	376, 1866, 3036, 3521, 4829
SspI	AATATT	4 cut(s)	1716, 1831, 2715, 3029
StuI	AGGCCT	3 cut(s)	68, 143, 1493
StyI	CCWWGG	2 cut(s)	1785, 2535
TaiI	ACGT	7 cut(s)	923, 1058, 1433, 2091, 2944, 3199, 4510
TaqI	TCGA	9 cut(s)	137, 206, 655, 3997, 4164, 4470, 4709, 4728, 4998
TaqII	GACCGA	1 cut(s)	2068
TatI	WGTACW	7 cut(s)	1546, 1556, 1706, 3074, 3392, 4233, 5093
TauI	GCSGC	1 cut(s)	1869
Tru1I	TTAA	7 cut(s)	1301, 1580, 1586, 2369, 2469, 3981, 4743
Tru9I	TTAA	7 cut(s)	1301, 1580, 1586, 2369, 2469, 3981, 4743
TseI	GCWGC	4 cut(s)	743, 1163, 1271, 1418
TspGWI	ACGGA	4 cut(s)	547, 2064, 3110, 4935
TspMI	CCCGGG	1 cut(s)	4595
Van91I	CCANNNNNTGG	2 cut(s)	1775, 3262
VpaK11BI	GGWCC	7 cut(s)	475, 823, 1292, 3200, 3227, 3242, 4427
VspI	ATTAAT	2 cut(s)	1580, 3981
XagI	CCTNNNNNAGG	1 cut(s)	1484
XbaI	TCTAGA	1 cut(s)	3406
XceI	RCATGY	2 cut(s)	1418, 3130
XhoI	CTCGAG	1 cut(s)	205
XmaI	CCCGGG	1 cut(s)	4595
XmiI	GTMKAC	8 cut(s)	15, 514, 1150, 1659, 2000, 2240, 4998, 5016
XmnI	GAANNNNTTC	3 cut(s)	1618, 2943, 3576
ZrmI	AGTACT	3 cut(s)	1558, 3076, 3394
Zsp2I	ATGCAT	2 cut(s)	1382, 3440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.