Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Reverse (-)

11042544 .. 11056923

Gene Structure 14380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5121 bp

ATGGAGGACAATGTAGAGCAACCAGGCAAAGACCCAGTTGAGAGTCCCCAAGTTTCTGAGAAGCAGGCCTCTGTTGGTTCATCAGGAACTGCAAAAAGAGTTACCAAGACAGTGAAACCTGGGGCTTCAGTGACATCAAAGGCCTCGGTTCCCATTAGTAGTGTTAGAAAGAAAGTAGAGGCGAAAAGTGGTTTGGATTCTAGCTCGAGTGCAACGAAGTCAAGTGCAACTGGGACTTCCAGAAGTTTGAATTCAGTTCCAGTAGCAAGGCGAAACAGCACTGGTGGTTTGCCTCAGAAGCCGTCAGTCTCCACTGCAAGACAGCAGAGCAATGCCACTCCAATTGTGGGCAATAAGTCTGCAGACCCTGTAAGGCGATCTCTCCCCGAGCTTAGGAGAAGTTCTTTGCCTTCAGTAGTTACAAAATCAACCAGTGTTTCACAGGCTGTAAAGTTGTCTGCCGGGTCACCATTGGACCGGAGTCTGAATAAACCATCGGGTTCTCTTGCGAGTAGACAAGAGACTGTCAGGAAGCCTTCTGTCAAGCCAGCATCGTCCGTTTCATCTTCGTCTTCAAGGATGACAACTTCTTCATTGGACAGTAGTGCTAGTAGTGGAGTCAGGAAGTCAGTCTCAATGCTTTCTTCCTCATCAGCTCGATCACCTACAGTTACCAGTGGACTGAGATCTGGGTCTTTGTCTTCGTCTATGAATAGTAGTGCTAGTTTATCTGGACGCAGGAAAGCGGCAACACCTCAAGGCCGAGATTCTCGGTTTATTGTTCTTCCAAAGGTGGAAATCAAAGCTGGTGATGATCTGAGGTTGGACCTTAGGGGTCACAGAGTTCGCAGTCTCAAGGCCAGTGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTCAGAGATAATCTTTTATCTACGTTGGAAGGGGTTGAAATACTGACGAGAGTAAAGGTTCTTGATTTGAGTTTCAATGATTTCAAAGGGCCTGGATTTGAACCTCTTGAAAATTGCAGAGTCTTACAGCAACTTTATCTGGCTGGAAATCAAATCACGTCGCTTGCAAACCTCCCTCAGCTCCCCAATTTGGAGTTCCTCTCTGTTGCTCAAAATAAGTTGAAGAATCTTACAATGGCAAGTCAACCTCGTCTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGATTCCCGTATTTACCGGTTCTTGAGCATTTACGAGTGGAGGAGAATCCTATACTAAAAATGCCTCATGTAGAAGCAGCTTCCATTTTGCTTGCTGGTCCTACCTTAAAAAAGTTCAATGACAGAGATCTTTCCCGAGAACAGGTAGCAATTGCAAAGCGTTATCCTGCACACACATCATTATGCATTAGAGATGGTTGGGAGTTTTGCCGTCCAGAGCATGCAGCAGACTCAACGTTTCGCTTTCTAGTTGAGCAATGGAAGGATAACTTGCCTCCCGGCTTCCTGGTCAAGGAGGCCTTTATTGATCAGCCATTTGAAGAAGATACTTGTCGCTGTCACTTCTCTTTTGTACAAGACAGCACTTTGGTCACTGATCCACAATTAATCTTAAAATATCAGTGGTTTGTAGGAGAAAGAACACCTTCCAATTTCACCAACATTCCTGATGCCACTGGAGAGGTATACTGGCCTAAGCATGAAGATATTGGTAAAATTTTGAAAGTGGAATGTACTCCAATATTAGGAGAAATGGAGTACCCTCCTATTTTTGCTATATCTTCATCAGTTTCACCAGGTACTGGAATTCCCAAGGTTGTGAACCTTGATGTTCGTGGAGAACTGGTGGAGGGAAATATTATAAGGGGCCATGCAGAGATTGCGTGGTGTGGCGGCACTCCAGCAAAAGGTGTTTCTAGTTGGTTGAGGAGGAAATGGAACAGCAGTCCTGTGGTTATTGCTGGAGCTGAAGATGAGGAGTATAAGTTGACCATAGATGATATCGATACAAGTTTGGTTTTCATGTATACACCAGTGACAGAAGAAGGTGCCAAAGGAGAACCCCATTATAAATACACTGATTTTGTAAAATCAGCACCGCCGTCGGTCAATAACGTTCAAATCGTTGGAGATCTTGTTGAAGGAACTACCATCAGAGGAGTTGGTGATTACTTTGGAGGAAGAGAGGGCCCTAGCAAATTTGAATGGTTATGTGAGCATAGCGACAGTGGAAACTTTGTTTTGGTATCAACTGGTACATCTGAGTATACTTTGAGCAAGGAGGATGTTGGGCATCGCTTGGCTTTTGCATATATACCTATCAATTTTGAAGGGCAAGAAGGGGAATCTGTTTCAATACTGTCCGATGTGGTGAAGCAAGCACCTCCGAAGGTATTAAATCTGAAGATAATAGGTGATATGAAGGAGAACAGTAAGGTTACTGCCACTGGTATTGTCACTGGAGGAACTGAAGGTTCTAGCAGGGTACAGTGGTTTAAAACAAGGTTCTCAACTTTGGAGGGTGAGAAAGGTCTTGAAGCGTTGAGCACATCCAAGATTGCCAAGGCGTTTCGCATACCATTGGGAGCTGTTGGCTATTACATTGTTGCAAAATTCACTCCTTTGACTCCAGATGGTGAATCTGGTGACCCAGCATATGTTATTTCAGATACAGCAGTTGAGACTCTGCCTCCTAGCCTGAATTTCTTATCTATTACTGGAGATTACTCGGAAGGTGGAATATTGACTGGATCATATGGTTATATCGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATATTCATGAGGTTGAAACTGATTCCGGATCTCTAATACCTGAGGTCACAGGGCTTCTTCAGTATCGTATTACAAAAGATGCAATTGGTAAATTCATTTCATTCCAATGTACCCCAGTGCGTGATGATGGGATTGTGGGTGAACCAACAACGTGCATGGGCCAGGAACGTGTTCGCCCTGGAAGCCCTAGATTGCTTTCCCTACGAATTGTCGGGGATGCCACTGAAGGTACTTCACTTACTGTTGACAAAAAATATTGGGGCGGTGAAGAGGGAGATTCACTTTTCTACTGGTTCCGGAGTACTTCAGATGGAACTCCAACGGAAATTAGGGGTGCAACTACTGCTTCATACATGCTCTCAATTGATGACATTGGCTTCTTTATCTCAGTGTCATGTGAGCCTGTCAGAAGTGACTGGGCGCGTGGTCCTACTGTTCTTTCTGAACAAATTGGACCTATAATACCTGGTCCCCCAACATGCCACTCTTTGGAGTTTCTTGGTTCAATGATTGAAGGACAACGCTTGAGCTTTATTGCTTCTTATACTGGAGGGGAGAAAGGAAATTGCTTCCATGAATGGTTTAGAGTGAAAAGTAATGGTGTCAAGGGGAAATTGAGTACTCAGGATTTTCTAGATTTGACTCTTGATGATGTGGGAAGATGCATTGAACTTGTTTACACCCCTATGCGCAAGGATGGGACGAGAGGAAATCCTATGAGCAGAAAATCTGATGTGGTTGGCCCTGCGGATCCTGAAGGACTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGAATATGCAGTAAAACACTAACATATAAACCAGCACTTGAAGATGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAATTTGCAACTCTCCGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATGATGGAACTATCAGTCTTATTAATGGGGCCAACTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGCGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGCTATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTATTTCAGCATCGACAGAGCCGATTGCAGTCGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCTTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1706

Amino Acids

186.58

Weight (kDa)

6.36

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	342 - 378	1.3e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	497 - 585	2.8e-09	AIR9 A9 domain
IG_AIR9	PF23197	598 - 682	4.8e-20	AIR9 A9 domain
IG_AIR9	PF23197	694 - 780	1e-33	AIR9 A9 domain
IG_AIR9	PF23197	790 - 881	1.4e-13	AIR9 A9 domain
IG_AIR9	PF23197	892 - 978	6.5e-23	AIR9 A9 domain
IG_AIR9	PF23197	992 - 1071	1e-20	AIR9 A9 domain
IG_AIR9	PF23197	1086 - 1167	1.8e-23	AIR9 A9 domain
IG_AIR9	PF23197	1183 - 1271	3e-16	AIR9 A9 domain
IG_AIR9	PF23197	1296 - 1364	1.1e-16	AIR9 A9 domain
IG_AIR9	PF23197	1486 - 1571	1.3e-19	AIR9 A9 domain
PH_AIR9	PF23218	1595 - 1691	4.5e-52	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1838, 2046, 4871
AatII	GACGTC	1 cut(s)	4353
Acc16I	TGCGCA	1 cut(s)	3467
Acc36I	ACCTGC	1 cut(s)	4318
AccB1I	GGYRCC	3 cut(s)	2024, 3772, 5022
AccB7I	CCANNNNNTGG	2 cut(s)	1778, 3265
AccI	GTMKAC	7 cut(s)	514, 1153, 1662, 2003, 2243, 4983, 5001
AccII	CGCG	1 cut(s)	3199
AccIII	TCCGGA	2 cut(s)	2801, 3072
AciI	CCGC	5 cut(s)	746, 1869, 2075, 3039, 3524
AclI	AACGTT	2 cut(s)	1433, 2091
AclWI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3667, 4192, 4765, 4797
AcyI	GRCGYC	1 cut(s)	4350
AflIII	ACRYGT	1 cut(s)	2944
AgeI	ACCGGT	1 cut(s)	1213
AhlI	ACTAGT	1 cut(s)	3808
AjiI	CACGTC	1 cut(s)	1059
AjuI	GAANNNNNNNTTGG	6 cut(s)	176, 208, 1079, 1111, 4877, 4909
Alw21I	GWGCWC	1 cut(s)	2525
Alw26I	GTCTC	7 cut(s)	313, 515, 637, 857, 2651, 3885, 4126
AlwI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3667, 4192, 4765, 4797
AlwNI	CAGNNNCTG	3 cut(s)	89, 368, 1778
Ama87I	CYCGRG	4 cut(s)	205, 386, 1332, 4598
Aor13HI	TCCGGA	2 cut(s)	2801, 3072
ApaI	GGGCCC	1 cut(s)	2168
ApeKI	GCWGC	3 cut(s)	1166, 1274, 1421
AseI	ATTAAT	2 cut(s)	1583, 3984
AsiGI	ACCGGT	1 cut(s)	1213
Asp700I	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
AspLEI	GCGC	3 cut(s)	3199, 3468, 4359
AsuC2I	CCSGG	4 cut(s)	463, 1476, 4599, 4600
AvaI	CYCGRG	4 cut(s)	205, 386, 1332, 4598
AvaII	GGWCC	7 cut(s)	475, 826, 1295, 3203, 3230, 3245, 4430
AxyI	CCTNAGG	2 cut(s)	830, 2817
BaeGI	GKGCMC	2 cut(s)	2168, 3777
BaeI	ACNNNNGTAYC	4 cut(s)	2453, 2486, 2637, 2670
BamHI	GGATCC	1 cut(s)	3526
BanI	GGYRCC	3 cut(s)	2024, 3772, 5022
BanII	GRGCYC	1 cut(s)	2168
BbsI	GAAGAC	2 cut(s)	564, 693
Bbv12I	GWGCWC	1 cut(s)	2525
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	3 cut(s)	1153, 1286, 1433
BceAI	ACGGC	4 cut(s)	286, 1392, 2062, 4020
BcgI	CGANNNNNNTGC	2 cut(s)	2061, 2095
BclI	TGATCA	2 cut(s)	1504, 5049
BcnI	CCSGG	4 cut(s)	463, 1476, 4599, 4600
BcoDI	GTCTC	7 cut(s)	313, 515, 637, 857, 2651, 3885, 4126
BcuI	ACTAGT	1 cut(s)	3808
BfmI	CTRYAG	5 cut(s)	360, 666, 1154, 4645, 4812
BfoI	RGCGCY	1 cut(s)	4360
BfuAI	ACCTGC	1 cut(s)	4318
BglII	AGATCT	3 cut(s)	686, 1324, 2107
BisI	GCNGC	5 cut(s)	747, 1167, 1275, 1422, 1870
BlpI	GCTNAGC	2 cut(s)	4314, 4407
BlsI	GCNGC	5 cut(s)	748, 1168, 1276, 1423, 1871
BmcAI	AGTACT	2 cut(s)	3079, 3397
Bme18I	GGWCC	7 cut(s)	475, 826, 1295, 3203, 3230, 3245, 4430
BmeT110I	CYCGRG	4 cut(s)	205, 386, 1332, 4598
BmgBI	CACGTC	1 cut(s)	1059
BmrI	ACTGGG	4 cut(s)	29, 240, 2885, 3202
BmuI	ACTGGG	4 cut(s)	29, 240, 2885, 3202
BoxI	GACNNNNGTC	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	564, 693
BplI	GAGNNNNNCTC	4 cut(s)	1085, 1117, 4198, 4230
BpmI	CTGGAG	9 cut(s)	1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4487
Bpu10I	CCTNAGC	3 cut(s)	392, 1077, 1671
Bpu1102I	GCTNAGC	2 cut(s)	4314, 4407
BpuEI	CTTGAG	6 cut(s)	741, 839, 1241, 3322, 4847, 5084
BpuMI	CCSGG	4 cut(s)	463, 1476, 4599, 4600
Bsa29I	ATCGAT	1 cut(s)	1980
BsaAI	YACGTR	1 cut(s)	4511
BsaHI	GRCGYC	1 cut(s)	4350
BsaJI	CCNNGG	7 cut(s)	119, 144, 1788, 2538, 2953, 4598, 4599
BsaWI	WCCGGW	5 cut(s)	477, 1213, 2801, 3072, 3829
BsaXI	ACNNNNNCTCC	8 cut(s)	1806, 1836, 1946, 1976, 2097, 2127, 2650, 2680
Bse118I	RCCGGY	1 cut(s)	1213
Bse21I	CCTNAGG	2 cut(s)	830, 2817
Bse3DI	GCAATG	3 cut(s)	337, 1460, 3665
BseAI	TCCGGA	2 cut(s)	2801, 3072
BseCI	ATCGAT	1 cut(s)	1980
BseDI	CCNNGG	7 cut(s)	119, 144, 1788, 2538, 2953, 4598, 4599
BseGI	GGATG	9 cut(s)	585, 2266, 2525, 2998, 3478, 3574, 3935, 4639, 4687
BseMI	GCAATG	3 cut(s)	337, 1460, 3665
BseRI	GAGGAG	5 cut(s)	1253, 1918, 1967, 2148, 3623
BseSI	GKGCMC	2 cut(s)	2168, 3777
BseXI	GCAGC	3 cut(s)	1153, 1286, 1433
BseYI	CCCAGC	1 cut(s)	2626
BsgI	GTGCAG	2 cut(s)	1350, 5033
Bsh1236I	CGCG	1 cut(s)	3199
BshNI	GGYRCC	3 cut(s)	2024, 3772, 5022
BshTI	ACCGGT	1 cut(s)	1213
BshVI	ATCGAT	1 cut(s)	1980
BsiHKAI	GWGCWC	1 cut(s)	2525
BsiHKCI	CYCGRG	4 cut(s)	205, 386, 1332, 4598
BsiSI	CCGG	8 cut(s)	462, 478, 1214, 1476, 2802, 3073, 3830, 4599
BslFI	GGGAC	4 cut(s)	30, 247, 3231, 3490
BsmAI	GTCTC	7 cut(s)	313, 515, 637, 857, 2651, 3885, 4126
BsmFI	GGGAC	4 cut(s)	30, 247, 3231, 3490
BsoBI	CYCGRG	4 cut(s)	205, 386, 1332, 4598
Bsp120I	GGGCCC	1 cut(s)	2164
Bsp1286I	GDGCHC	3 cut(s)	2168, 2525, 3777
Bsp13I	TCCGGA	2 cut(s)	2801, 3072
Bsp1407I	TGTACA	1 cut(s)	1549
Bsp1720I	GCTNAGC	2 cut(s)	4314, 4407
BspACI	CCGC	5 cut(s)	746, 1869, 2075, 3039, 3524
BspDI	ATCGAT	1 cut(s)	1980
BspEI	TCCGGA	2 cut(s)	2801, 3072
BspFNI	CGCG	1 cut(s)	3199
BspHI	TCATGA	2 cut(s)	2749, 2782
BspMAI	CTGCAG	2 cut(s)	364, 4816
BspMI	ACCTGC	1 cut(s)	4318
BspPI	GGATC	9 cut(s)	1568, 2734, 2812, 3521, 3534, 3667, 4192, 4765, 4797
BspQI	GCTCTTC	1 cut(s)	3849
BspT107I	GGYRCC	3 cut(s)	2024, 3772, 5022
BsrDI	GCAATG	3 cut(s)	337, 1460, 3665
BsrFI	RCCGGY	1 cut(s)	1213
BsrGI	TGTACA	1 cut(s)	1549
BssAI	RCCGGY	1 cut(s)	1213
BssECI	CCNNGG	7 cut(s)	119, 144, 1788, 2538, 2953, 4598, 4599
BssNAI	GTATAC	3 cut(s)	1663, 2004, 2244
BssNI	GRCGYC	1 cut(s)	4350
BssT1I	CCWWGG	2 cut(s)	1788, 2538
Bst1107I	GTATAC	3 cut(s)	1663, 2004, 2244
Bst6I	CTCTTC	4 cut(s)	2152, 3039, 3849, 5100
BstACI	GRCGYC	1 cut(s)	4350
BstAPI	GCANNNNNTGC	3 cut(s)	1856, 3119, 3812
BstAUI	TGTACA	1 cut(s)	1549
BstBAI	YACGTR	1 cut(s)	4511
BstC8I	GCNNGC	9 cut(s)	66, 549, 1065, 1171, 1290, 1419, 2355, 4146, 4413
BstEII	GGTNACC	3 cut(s)	465, 2621, 4695
BstENI	CCTNNNNNAGG	1 cut(s)	1487
BstF5I	GGATG	9 cut(s)	585, 2266, 2525, 2998, 3478, 3574, 3935, 4639, 4687
BstFNI	CGCG	1 cut(s)	3199
BstH2I	RGCGCY	1 cut(s)	4360
BstHHI	GCGC	3 cut(s)	3199, 3468, 4359
BstMAI	GTCTC	7 cut(s)	313, 515, 637, 857, 2651, 3885, 4126
BstNSI	RCATGY	3 cut(s)	1421, 3133, 3258
BstPAI	GACNNNNGTC	1 cut(s)	480
BstPI	GGTNACC	3 cut(s)	465, 2621, 4695
BstSFI	CTRYAG	5 cut(s)	360, 666, 1154, 4645, 4812
BstSLI	GKGCMC	2 cut(s)	2168, 3777
BstUI	CGCG	1 cut(s)	3199
BstV1I	GCAGC	3 cut(s)	1153, 1286, 1433
BstV2I	GAAGAC	2 cut(s)	564, 693
BstX2I	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
BstYI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
BstZ17I	GTATAC	3 cut(s)	1663, 2004, 2244
Bsu15I	ATCGAT	1 cut(s)	1980
Bsu36I	CCTNAGG	2 cut(s)	830, 2817
BsuTUI	ATCGAT	1 cut(s)	1980
BtgZI	GCGATG	1 cut(s)	2255
BtrI	CACGTC	1 cut(s)	1059
BtsCI	GGATG	9 cut(s)	585, 2266, 2525, 2998, 3478, 3574, 3935, 4639, 4687
BtsI	GCAGTG	2 cut(s)	312, 4284
BveI	ACCTGC	1 cut(s)	4318
Cac8I	GCNNGC	9 cut(s)	66, 549, 1065, 1171, 1290, 1419, 2355, 4146, 4413
CaiI	CAGNNNCTG	3 cut(s)	89, 368, 1778
CciI	TCATGA	2 cut(s)	2749, 2782
CfoI	GCGC	3 cut(s)	3199, 3468, 4359
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr9I	CCCGGG	1 cut(s)	4598
ClaI	ATCGAT	1 cut(s)	1980
CseI	GACGC	1 cut(s)	744
CsiI	ACCWGGT	2 cut(s)	1771, 3241
CspAI	ACCGGT	1 cut(s)	1213
CspCI	CAANNNNNGTGG	6 cut(s)	325, 360, 844, 879, 2410, 2445
DraI	TTTAAA	1 cut(s)	2473
Eam1104I	CTCTTC	4 cut(s)	2152, 3039, 3849, 5100
EarI	CTCTTC	4 cut(s)	2152, 3039, 3849, 5100
Eco130I	CCWWGG	2 cut(s)	1788, 2538
Eco147I	AGGCCT	3 cut(s)	68, 143, 1496
Eco24I	GRGCYC	1 cut(s)	2168
Eco32I	GATATC	2 cut(s)	1978, 4256
Eco47I	GGWCC	7 cut(s)	475, 826, 1295, 3203, 3230, 3245, 4430
Eco81I	CCTNAGG	2 cut(s)	830, 2817
Eco88I	CYCGRG	4 cut(s)	205, 386, 1332, 4598
Eco91I	GGTNACC	3 cut(s)	465, 2621, 4695
EcoNI	CCTNNNNNAGG	1 cut(s)	1487
EcoO109I	RGGNCCY	3 cut(s)	989, 2164, 2165
EcoO65I	GGTNACC	3 cut(s)	465, 2621, 4695
EcoRI	GAATTC	3 cut(s)	250, 1782, 4446
EcoRV	GATATC	2 cut(s)	1978, 4256
EcoT14I	CCWWGG	2 cut(s)	1788, 2538
EcoT22I	ATGCAT	2 cut(s)	1385, 3443
EcoT38I	GRGCYC	1 cut(s)	2168
ErhI	CCWWGG	2 cut(s)	1788, 2538
FalI	AAGNNNNNCTT	6 cut(s)	1451, 1483, 1481, 1513, 1606, 1638
FaqI	GGGAC	4 cut(s)	30, 247, 3231, 3490
FauNDI	CATATG	3 cut(s)	2632, 2731, 4417
FbaI	TGATCA	2 cut(s)	1504, 5049
FblI	GTMKAC	7 cut(s)	514, 1153, 1662, 2003, 2243, 4983, 5001
Fnu4HI	GCNGC	5 cut(s)	747, 1167, 1275, 1422, 1870
FokI	GGATG	9 cut(s)	592, 2273, 2512, 3005, 3485, 3581, 3942, 4646, 4694
FriOI	GRGCYC	1 cut(s)	2168
Fsp4HI	GCNGC	5 cut(s)	747, 1167, 1275, 1422, 1870
FspI	TGCGCA	1 cut(s)	3467
GlaI	GCGC	3 cut(s)	3198, 3467, 4358
GluI	GCNGC	5 cut(s)	747, 1167, 1275, 1422, 1870
GsaI	CCCAGC	1 cut(s)	2630
GsuI	CTGGAG	9 cut(s)	1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4487
HaeII	RGCGCY	1 cut(s)	4360
HapII	CCGG	8 cut(s)	462, 478, 1214, 1476, 2802, 3073, 3830, 4599
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	3 cut(s)	3199, 3468, 4359
Hin1I	GRCGYC	1 cut(s)	4350
Hin6I	GCGC	3 cut(s)	3197, 3466, 4357
HinP1I	GCGC	3 cut(s)	3197, 3466, 4357
HincII	GTYRAC	4 cut(s)	1145, 1965, 3022, 4984
HindII	GTYRAC	4 cut(s)	1145, 1965, 3022, 4984
HindIII	AAGCTT	2 cut(s)	3650, 4745
HpaII	CCGG	8 cut(s)	462, 478, 1214, 1476, 2802, 3073, 3830, 4599
Hpy99I	CGWCG	3 cut(s)	1063, 2083, 4355
HpyCH4IV	ACGT	8 cut(s)	923, 1058, 1433, 2091, 2927, 2944, 4350, 4510
HpySE526I	ACGT	8 cut(s)	923, 1058, 1433, 2091, 2927, 2944, 4350, 4510
Hsp92I	GRCGYC	1 cut(s)	4350
HspAI	GCGC	3 cut(s)	3197, 3466, 4357
Kpn2I	TCCGGA	2 cut(s)	2801, 3072
Ksp22I	TGATCA	2 cut(s)	1504, 5049
LguI	GCTCTTC	1 cut(s)	3849
LmnI	GCTCC	7 cut(s)	1086, 1940, 2561, 3541, 3933, 4331, 4942
Lsp1109I	GCAGC	3 cut(s)	1153, 1286, 1433
MabI	ACCWGGT	2 cut(s)	1771, 3241
MaeII	ACGT	8 cut(s)	923, 1058, 1433, 2091, 2927, 2944, 4350, 4510
MfeI	CAATTG	4 cut(s)	342, 1347, 2859, 3138
MflI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
MhlI	GDGCHC	3 cut(s)	2168, 2525, 3777
MmeI	TCCRAC	6 cut(s)	804, 906, 2083, 3119, 3598, 3679
Mph1103I	ATGCAT	2 cut(s)	1385, 3443
MroI	TCCGGA	2 cut(s)	2801, 3072
MroXI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
MseI	TTAA	6 cut(s)	1304, 1583, 1589, 2372, 2472, 3984
MslI	CAYNNNNRTG	3 cut(s)	1378, 2881, 3461
MspA1I	CMGCKG	1 cut(s)	4406
MspI	CCGG	8 cut(s)	462, 478, 1214, 1476, 2802, 3073, 3830, 4599
MunI	CAATTG	4 cut(s)	342, 1347, 2859, 3138
MvnI	CGCG	1 cut(s)	3199
NciI	CCSGG	4 cut(s)	463, 1476, 4599, 4600
NdeI	CATATG	3 cut(s)	2632, 2731, 4417
NmeAIII	GCCGAG	1 cut(s)	788
NsbI	TGCGCA	1 cut(s)	3467
NsiI	ATGCAT	2 cut(s)	1385, 3443
NspI	RCATGY	3 cut(s)	1421, 3133, 3258
PaeI	GCATGC	1 cut(s)	1421
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	2 cut(s)	2749, 2782
PceI	AGGCCT	3 cut(s)	68, 143, 1496
PciSI	GCTCTTC	1 cut(s)	3849
PcsI	WCGNNNNNNNCGW	3 cut(s)	212, 2097, 4718
PdmI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
PflMI	CCANNNNNTGG	2 cut(s)	1778, 3265
PinAI	ACCGGT	1 cut(s)	1213
PkrI	GCNGC	5 cut(s)	748, 1168, 1276, 1423, 1871
Ppu21I	YACGTR	1 cut(s)	4511
PshAI	GACNNNNGTC	1 cut(s)	480
PshBI	ATTAAT	2 cut(s)	1583, 3984
PsiI	TTATAA	3 cut(s)	1838, 2046, 4871
Psp1406I	AACGTT	2 cut(s)	1433, 2091
PspEI	GGTNACC	3 cut(s)	465, 2621, 4695
PspFI	CCCAGC	1 cut(s)	2626
PspOMI	GGGCCC	1 cut(s)	2164
PspXI	VCTCGAGB	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	364, 4816
PstNI	CAGNNNCTG	3 cut(s)	89, 368, 1778
PsuI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
PvuII	CAGCTG	1 cut(s)	4406
RseI	CAYNNNNRTG	3 cut(s)	1378, 2881, 3461
SalI	GTCGAC	1 cut(s)	4982
SapI	GCTCTTC	1 cut(s)	3849
SaqAI	TTAA	6 cut(s)	1304, 1583, 1589, 2372, 2472, 3984
SatI	GCNGC	5 cut(s)	747, 1167, 1275, 1422, 1870
ScaI	AGTACT	2 cut(s)	3079, 3397
SduI	GDGCHC	3 cut(s)	2168, 2525, 3777
SexAI	ACCWGGT	2 cut(s)	1771, 3241
SfcI	CTRYAG	5 cut(s)	360, 666, 1154, 4645, 4812
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	7 cut(s)	475, 826, 1295, 3203, 3230, 3245, 4430
SlaI	CTCGAG	1 cut(s)	205
SmaI	CCCGGG	1 cut(s)	4600
SmiMI	CAYNNNNRTG	3 cut(s)	1378, 2881, 3461
SmlI	CTYRAG	7 cut(s)	205, 756, 854, 1220, 3301, 4826, 5099
SmoI	CTYRAG	7 cut(s)	205, 756, 854, 1220, 3301, 4826, 5099
SpeI	ACTAGT	1 cut(s)	3808
SphI	GCATGC	1 cut(s)	1421
SseBI	AGGCCT	3 cut(s)	68, 143, 1496
SsiI	CCGC	5 cut(s)	746, 1869, 2075, 3039, 3524
SspI	AATATT	4 cut(s)	1719, 1834, 2718, 3032
StuI	AGGCCT	3 cut(s)	68, 143, 1496
StyI	CCWWGG	2 cut(s)	1788, 2538
TaiI	ACGT	8 cut(s)	926, 1061, 1436, 2094, 2930, 2947, 4353, 4513
TaqI	TCGA	9 cut(s)	206, 658, 1980, 4000, 4167, 4473, 4712, 4731, 4983
TaqII	GACCGA	1 cut(s)	2071
TatI	WGTACW	6 cut(s)	1549, 1709, 3077, 3395, 4236, 5078
TauI	GCSGC	2 cut(s)	749, 1872
Tru1I	TTAA	6 cut(s)	1304, 1583, 1589, 2372, 2472, 3984
Tru9I	TTAA	6 cut(s)	1304, 1583, 1589, 2372, 2472, 3984
TseI	GCWGC	3 cut(s)	1166, 1274, 1421
TspGWI	ACGGA	3 cut(s)	547, 3113, 4920
TspMI	CCCGGG	1 cut(s)	4598
Van91I	CCANNNNNTGG	2 cut(s)	1778, 3265
VpaK11BI	GGWCC	7 cut(s)	475, 826, 1295, 3203, 3230, 3245, 4430
VspI	ATTAAT	2 cut(s)	1583, 3984
XagI	CCTNNNNNAGG	1 cut(s)	1487
XbaI	TCTAGA	1 cut(s)	3409
XceI	RCATGY	3 cut(s)	1421, 3133, 3258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	205
XmaI	CCCGGG	1 cut(s)	4598
XmiI	GTMKAC	7 cut(s)	514, 1153, 1662, 2003, 2243, 4983, 5001
XmnI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
ZraI	GACGTC	1 cut(s)	4351
ZrmI	AGTACT	2 cut(s)	3079, 3397
Zsp2I	ATGCAT	2 cut(s)	1385, 3443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.