Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Reverse (-)

1875581 .. 1877897

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCGTCTGCAGAAACTTCTCAAGGTATGATGCTAGACAACAATGAAGAAGAAGACCCCAAGGGGACAACAGCAATAGCTTTCTTTAACAAGGATGGCGTCATTGCTGCCGTAGAGTCGAGAGAGTCCAATGAATGGGTTTCTGAAACTAAGAGGAAGATAGATTGGAGTCCTAATATTTCGGACAAAGCCAATAAAGCAAATTATATAACCAAAAAGATACTATCCATATCGGTGGGGAGTAGATTTCAGTGTAACAAGATGAATGTGCATCTGAATAAAGAGGGTTTTCAAGTTCATCGCCTTTTTATAAAAGACAATGTAGTGGTTAGAGAAATGGATAAGGAGATTGGTTCACTAGGATCTGGTTCTGCTTATGCCAATGATATCTTAGTCCACGGTTATGACTTCAACTTGTCCATGCCTGATGGGATAAAATTTGCCATTAAAACGGTGTTGAACGGTTCCTTTTTTGACAAAAGTAGCGGAGGAACGATACATGCTTTTCACGTGAGCAATGAGAGATGTTTTGTTATGGAGCCTTGCCAAGCTTTAAATGCATATCGGGACAATTTCGAGCACTATGATCCAGGACGGATGCTCTTCTTGATATACAATGTTATGGATACATCACTTCTTAGTTCCGATCATTTCATAAATCTATTCAGGTCGGAGGGAGACATTCTAGCTGCCCACCGTGTTGATGAGCGTATATCACATAACTTTCAATTCTTCCTTCATCGCCTCGTATTCACCAGTCGAGAGGAGGCTAGGAAAGTACTTAGTTGCTCGAAGGTGAAGATGTATCACGTTAAGGATTCTGACCCCCCCTATTTTCACACACTTTCCATACCAAGTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

288

Amino Acids

32.74

Weight (kDa)

6.18

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	135
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	3 cut(s)	370, 581, 854
AcsI	RAATTY	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	293, 412, 460, 728
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	3 cut(s)	80, 551, 689
AluI	AGCT	3 cut(s)	80, 551, 689
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	3 cut(s)	370, 581, 854
ApeKI	GCWGC	2 cut(s)	107, 689
ApoI	RAATTY	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	745, 808
BbrPI	CACGTG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	94, 676
BccI	CCATC	2 cut(s)	89, 422
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	4 cut(s)	35, 359, 686, 771
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	108, 690
BlsI	GCNGC	2 cut(s)	109, 691
BmcAI	AGTACT	1 cut(s)	780
Bme1390I	CCNGG	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	466, 540
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	21, 280, 588
BpiI	GAAGAC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	60, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	756
Bse3DI	GCAATG	2 cut(s)	102, 523
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	60, 397
BseGI	GGATG	2 cut(s)	100, 603
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	2 cut(s)	102, 523
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	94, 676
BsiHKAI	GWGCWC	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	79, 581
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	79, 581
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	362, 586, 646, 859
BspACI	CCGC	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	466, 540
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	3 cut(s)	370, 581, 854
BspQI	GCTCTTC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	102, 523
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	60, 397
BssMI	GATC	4 cut(s)	362, 586, 646, 859
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	4 cut(s)	401, 454, 464, 698
Bst6I	CTCTTC	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	511
BstDEI	CTNAG	4 cut(s)	150, 391, 638, 782
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	100, 603
BstKTI	GATC	4 cut(s)	365, 589, 649, 862
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	4 cut(s)	362, 586, 646, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 557
BstNI	CCWGG	1 cut(s)	591
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	94, 676
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	397
BtgZI	GCGATG	2 cut(s)	284, 725
BtsCI	GGATG	2 cut(s)	100, 603
BtsIMutI	CAGTG	1 cut(s)	257
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	2 cut(s)	421, 500
CviJI	RGCY	6 cut(s)	80, 191, 541, 551, 689, 770
CviKI_1	RGCY	6 cut(s)	80, 191, 541, 551, 689, 770
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	4 cut(s)	150, 391, 638, 782
DpnI	GATC	4 cut(s)	364, 588, 648, 861
DpnII	GATC	4 cut(s)	362, 586, 646, 859
DraI	TTTAAA	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	388
Eco72I	CACGTG	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	424, 503
FalI	AAGNNNNNCTT	1 cut(s)	847
FaqI	GGGAC	2 cut(s)	79, 581
FatI	CATG	2 cut(s)	420, 499
Fnu4HI	GCNGC	2 cut(s)	108, 690
FokI	GGATG	2 cut(s)	107, 610
Fsp4HI	GCNGC	2 cut(s)	108, 690
FspBI	CTAG	4 cut(s)	35, 359, 686, 771
GluI	GCNGC	2 cut(s)	108, 690
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	424, 503
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	4 cut(s)	116, 125, 169, 818
HphI	GGTGA	2 cut(s)	745, 808
Hpy166II	GTNNAC	2 cut(s)	356, 397
Hpy188I	TCNGA	6 cut(s)	145, 184, 276, 646, 673, 823
Hpy188III	TCNNGA	4 cut(s)	120, 566, 607, 761
Hpy8I	GTNNAC	2 cut(s)	356, 397
HpyAV	CCTTC	2 cut(s)	746, 787
HpyCH4III	ACNGT	4 cut(s)	401, 454, 464, 698
HpyCH4IV	ACGT	2 cut(s)	510, 810
HpyCH4V	TGCA	3 cut(s)	11, 271, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 557
HpyF3I	CTNAG	4 cut(s)	150, 391, 638, 782
HpySE526I	ACGT	2 cut(s)	510, 810
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	424, 503
Kzo9I	GATC	4 cut(s)	362, 586, 646, 859
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	6 cut(s)	351, 438, 576, 603, 652, 769
Lsp1109I	GCAGC	2 cut(s)	94, 676
LweI	GCATC	3 cut(s)	21, 280, 588
MaeI	CTAG	4 cut(s)	35, 359, 686, 771
MaeII	ACGT	2 cut(s)	510, 810
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	4 cut(s)	364, 588, 648, 861
MboI	GATC	4 cut(s)	362, 586, 646, 859
MboII	GAAGA	7 cut(s)	59, 62, 65, 169, 595, 724, 811
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	4 cut(s)	202, 437, 571, 728
MlyI	GAGTC	3 cut(s)	125, 134, 178
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	7 cut(s)	147, 277, 482, 667, 755, 757, 760
Mph1103I	ATGCAT	1 cut(s)	562
MseI	TTAA	4 cut(s)	87, 447, 554, 813
MslI	CAYNNNNRTG	2 cut(s)	233, 402
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	197, 557
NdeII	GATC	4 cut(s)	362, 586, 646, 859
NlaIII	CATG	2 cut(s)	424, 503
NlaIV	GGNNCC	2 cut(s)	466, 540
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	818
PflMI	CCANNNNNTGG	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	109, 691
PleI	GAGTC	3 cut(s)	124, 133, 177
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	3 cut(s)	124, 133, 177
Ppu21I	YACGTR	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	589
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	2 cut(s)	466, 540
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	2 cut(s)	233, 402
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	4 cut(s)	87, 447, 554, 813
SatI	GCNGC	2 cut(s)	108, 690
Sau3AI	GATC	4 cut(s)	362, 586, 646, 859
ScaI	AGTACT	1 cut(s)	780
SchI	GAGTC	3 cut(s)	125, 134, 178
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	1 cut(s)	582
SetI	ASST	8 cut(s)	28, 82, 513, 553, 671, 691, 798, 813
SfaNI	GCATC	3 cut(s)	21, 280, 588
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	233, 402
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	202, 437, 571, 728
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	4 cut(s)	35, 359, 686, 771
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	401, 454, 464, 698
TaiI	ACGT	2 cut(s)	513, 813
TaqI	TCGA	4 cut(s)	119, 576, 760, 791
TasI	AATT	4 cut(s)	202, 437, 571, 728
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	1 cut(s)	818
Tru1I	TTAA	4 cut(s)	87, 447, 554, 813
Tru9I	TTAA	4 cut(s)	87, 447, 554, 813
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	2 cut(s)	107, 689
TspDTI	ATGAA	6 cut(s)	60, 147, 278, 287, 643, 728
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	4 cut(s)	35, 359, 686, 771
ZrmI	AGTACT	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.