Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Reverse (-)

11488658 .. 11505040

Gene Structure 16383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG121800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5106 bp

ATGGAGGACAATGTAGAGCAACCAGGCAAAGACCCAGTTGAGAGTCCCCAAGTTTCTGAGAAGCAGGCCTCCGTTGGTTCATCAGAAACTGCAAAAAGAGTTACCAAGACAGTGAAACCTGGGGCTTCAGTGACATCGAAGGCCTCGGGTCCCATTAGTAGTGTTAGAAAGAAAGTAGAGGCGAAAAGTGGTTTGGATTCTAGCTCAAGTGCAACTGGGACTTCCAGAAGTTTGAATTCAGTTCCAGTAGCAAGGCGAAACAGCACTGGTGGTTTGCCTCAGAAGCCGTCAGTCTCCACTGCAAGACAGCAGAGCAATGCCACTCCAATTGCAGGCAATAAGTCTGCAGACCCTGTAAGGCGGTCTCTCCCCGAGCTTAGGAGAAGTTCTTTGCCTTCAGTAGTTACAAAATCAACCAGTGTTTCACAGGCTGTAAAGTTGTCTGCCGGGTCACCATTGGACCGGAGTCTGAATAAACCATCGGGGTCTCTTGCGAGTAGACAAGAGACTGTCAGGAAGCCTTCTGTCAAGCCAGCATCGTCCGTTTCATCTTCGTCTTCAAGGATGACAACTTCTTCATTGGACAGTAGTGCTAGTAGTGGAGTCAGGAAGTCAGTCTCAAAGCTTTCTTCCTCATCAGCTCGATCACCTACAGTTACCAGTGGACTGAGATCCGGGTCTTTGTCTTCGTCTATGAATAGTAGTGCTAGTTTATCTGGACGCAGGAAAGCGGCAACACCTCAAGGCCGGGATTCTCGGTTTATTGTTCTTCCAAAGGTCGAAATCAAAGCTGGTGATGATCTGAGGTTGGACCTTAGGGGTCACAGAGTTCGCAGTCTCAAGGCCAGTGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTCAGAGATAATCTTTTATCTACGTTGGAAGGGGTTGAAATACTGACGAGAGTAAAGGTTCTTGATTTGAGTTTCAATGATTTCAAAGGGCCTGGATTTGAACCTCTTGAAAATTGCAGAGTCTTACAGCAACTCTATCTGGCTGGAAATCAAATCACGTCGCTTGCAAGCCTCCCTCAGCTCCCCAATTTGGAGTTCCTCTCTGTTGCTCAAAATAAGTTGAAGAATCTTACAATGGCAAGTCAACCTCGTCTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGATTCCCGTATTTACCGGTTCTTGAGCATTTACGAGTGGAGGAGAATCCTATACTAAAAATGCCTCATGTAGAAGCAGCTTCCATTTTGCTTGCTGGTCCTACCTTAAAAAAGTTCAATGACAGAGATCTTTCCCGAGAACAGGTAGCAATTGCAAAGCGTTATCCTGCACACACATCATTATGCATTAGAGATGGTTGGGAGTTTTGCCGTCCAGAGCATGCAGCAGACTCAACGTTTCGCTTTCTAGTTGAGCAATGGAAGGATAACTTGCCTCCGGGCTTCCTGGTCAAGGAGGCTTTTATTGATCAGCCATTTGAAGAAGATACTTGTCGCTGTCACTTCTCTTTTGTACAAGACAGTACTTTGGTCACTGATCCACAATTAATCTTAAAATATCAGTGGTTTGTAGGAGAAAGAACACCTTCCAATTTCACCAGCATTCCTGATGCCACTGGAGAGGTATACTGGCCTAAGCATGAAGATATTGGTAAAATTTTGAAAGTGGAATGTACTCCAATATTAGGAGAAATGGAGTACCCTCCTATTTTTGCTATATCTTCATCAGTTTCACCAGGTACTAGAATTCCCAAGGTTGTGAACCTTGATGTTCGTGGAGAACTGGTGGAGGGAAATATTATAAGGGGCCATGCAGAGATTGCGTGGTGTGGGGGCACTCCAGCAAAAGGTGTTTCTAGTTGGTTGAGGAGGAAATGGAACAGCAGTCCTGTTGTTATTGCTGGAGCTGAAGATGAGGAGTATAAGTTGACCATAGATGATATTGATACAAGTTTGGTTTTCATGTATACACCAGTGACAGAAGAAGGTGCCAAAGGAGAACCCCATTATAAATACACCGATTTTGTAAAATCAGCACCTCCATCGGTCAATAACGTTCAAATCGTTGGAGATCTTGTTGAAGGAACTACCATCAGAGGAGTTGGTGATTACTTTGGAGGAAGAGAGGGCCCCAGCAAGTTTGAATGGTTATGTGAGCATAGCGACAGTGGAAACTTTGTTTTGGTATCGACTGGTACATCTGAGTATACTTTGAGCAAGGAGGATGTTGGGCATCGCTTGGCTTTTGCATATATACCTATCAATTTTGAAGGGCAAGAAGGGGAATCTGTTTCAATACTGTCCGATGTGGTGAAGCAAGCACCTCCGAAGGTATTAAATCTGAAGATAATAGGTGATATGAAGGAGAACAGTAAGGTTACTGCCACTGGTATTGTCACTGGAGGAACTGAAGGTTCTAGCAGGGTACAGTGGTTTAAAACAAGGTTCTCAACTTTGGAGGGTGAGAAAGGTCTTGAAGCGTTGAGCACATCCAAGATTGCCAAGGCGTTTCGCATACCATTGGGAGCTGTTGGCTATTACATTGTTGCAAAATTCACTCCTATGACTCCAGATGGTGAATCTGGTGACCCAGCATATGTTATTTCAGATACAGCAGTTGAGACTCTGCCTCCTAGCCTGAATTTCTTATCTATTACTGGAGATTACTCAGAAGGTGGAATATTGACTGGATCATATGGTTATATCGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATATTCATGAGGTTGAAACTGATTCTGGATCTCTAATACCTGAGGTCACAGGGCTTCTTCAGTATCGTATTACAAAAGATGCAATTGGTAAATTCATTTCATTCCAATGTACCCCAGTGCGTGATGATGGGATTGTGGGTGAACCAACAACGTGCATGGGCCAGGAACGTGTTCGCCCTGGAAGCCCTAGATTGCTTTCCCTACGAATTGTCGGGGATGCCACTGAAGGTACTTCACTTACTGTTGACAAAAAATATTGGGGCGGTGAAGAGGGAGATTCACTTTTCTACTGGTTCCGGAGTACTTCAGATGGAACTCCAACGGAAATTAGGGGTGCAACTACTGCTTCATACATGCTCTCAATTGATGACATTGGCTTCTTTATCTCAGTGTCGTGTGAGCCTGTCAGAAGTGACTGGGCGCGTGGTCCTACTGTTCTTTCCGAACAAATTGGACCTATAATACCTGGTCCCCCAACATGCCACTCTTTGGAGTTTCTTGGTTCAATGATTGAAGGACAACGCTTGAGCTTTATTGCTTCTTATACTGGAGGGGAGAAAGGAAATTGCTTCCATGAATGGTTTAGAGTGAAAAGTAATGGTGTCAAGGAGAAATTGAGTACTCAGGATTTTCTAGATTTGACTCTTGATGATGTGGGAAGATGCATTGAACTTGTTTACACCCCTATGCGCAAGGATGGGACGAGAGGAAATCCTATGAGCATAAAATCTGATGTGGTTGGCCCTGCGGATCCTGAAGGACTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCAGTAAAACACTAACATATAAACCAGCACTTGAAGATGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAATTTGCAACTCTCCGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATGAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATGATGGAACTATCAGTCTTATTAATGGGGCCAACTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATGCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTTCTACAAGATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCAACAGAGCCGATTGCAGTCGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCGGTAGGAACTCTTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1701

Amino Acids

186.26

Weight (kDa)

6.24

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	337 - 373	1.3e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	492 - 580	1.5e-09	AIR9 A9 domain
IG_AIR9	PF23197	593 - 677	4.8e-20	AIR9 A9 domain
IG_AIR9	PF23197	689 - 775	1e-33	AIR9 A9 domain
IG_AIR9	PF23197	785 - 876	5.3e-14	AIR9 A9 domain
IG_AIR9	PF23197	887 - 973	6.4e-23	AIR9 A9 domain
IG_AIR9	PF23197	987 - 1066	9.9e-21	AIR9 A9 domain
IG_AIR9	PF23197	1081 - 1163	3.2e-24	AIR9 A9 domain
IG_AIR9	PF23197	1178 - 1266	3e-16	AIR9 A9 domain
IG_AIR9	PF23197	1291 - 1359	1.1e-16	AIR9 A9 domain
IG_AIR9	PF23197	1481 - 1566	6.2e-20	AIR9 A9 domain
PH_AIR9	PF23218	1590 - 1686	4.4e-52	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1823, 2031, 4856
AatII	GACGTC	1 cut(s)	4338
Acc16I	TGCGCA	1 cut(s)	3452
Acc36I	ACCTGC	1 cut(s)	4303
AccB1I	GGYRCC	3 cut(s)	2009, 3757, 5007
AccB7I	CCANNNNNTGG	1 cut(s)	3250
AccI	GTMKAC	7 cut(s)	499, 1138, 1647, 1988, 2228, 4968, 4986
AccII	CGCG	1 cut(s)	3184
AccIII	TCCGGA	1 cut(s)	3057
AciI	CCGC	5 cut(s)	361, 731, 3024, 3509, 4799
AclI	AACGTT	2 cut(s)	1418, 2076
AclWI	GGATC	9 cut(s)	666, 1553, 2719, 2797, 3506, 3519, 3652, 4750, 4782
AcyI	GRCGYC	1 cut(s)	4335
AflIII	ACRYGT	1 cut(s)	2929
AgeI	ACCGGT	1 cut(s)	1198
AhlI	ACTAGT	1 cut(s)	3793
AjiI	CACGTC	1 cut(s)	1044
AjuI	GAANNNNNNNTTGG	6 cut(s)	176, 208, 1064, 1096, 4862, 4894
Alw21I	GWGCWC	1 cut(s)	2510
Alw26I	GTCTC	9 cut(s)	298, 369, 492, 500, 622, 842, 2636, 3870, 4111
AlwI	GGATC	9 cut(s)	666, 1553, 2719, 2797, 3506, 3519, 3652, 4750, 4782
AlwNI	CAGNNNCTG	2 cut(s)	89, 353
Ama87I	CYCGRG	4 cut(s)	145, 371, 1317, 4583
Aor13HI	TCCGGA	1 cut(s)	3057
ApaI	GGGCCC	1 cut(s)	2153
ApeKI	GCWGC	3 cut(s)	1151, 1259, 1406
AseI	ATTAAT	2 cut(s)	1568, 3969
AsiGI	ACCGGT	1 cut(s)	1198
Asp700I	GAANNNNTTC	3 cut(s)	1606, 2931, 3564
AspLEI	GCGC	3 cut(s)	3184, 3453, 4344
AsuC2I	CCSGG	6 cut(s)	448, 676, 749, 1461, 4584, 4585
AvaI	CYCGRG	4 cut(s)	145, 371, 1317, 4583
AvaII	GGWCC	8 cut(s)	149, 460, 811, 1280, 3188, 3215, 3230, 4415
AxyI	CCTNAGG	2 cut(s)	815, 2802
BaeGI	GKGCMC	3 cut(s)	1859, 2153, 3762
BaeI	ACNNNNGTAYC	4 cut(s)	2438, 2471, 2622, 2655
BamHI	GGATCC	1 cut(s)	3511
BanI	GGYRCC	3 cut(s)	2009, 3757, 5007
BanII	GRGCYC	1 cut(s)	2153
BbsI	GAAGAC	2 cut(s)	549, 678
Bbv12I	GWGCWC	1 cut(s)	2510
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	3 cut(s)	1138, 1271, 1418
BceAI	ACGGC	3 cut(s)	271, 1377, 4005
BcgI	CGANNNNNNTGC	2 cut(s)	2046, 2080
BclI	TGATCA	2 cut(s)	1489, 5034
BcnI	CCSGG	6 cut(s)	448, 676, 749, 1461, 4584, 4585
BcoDI	GTCTC	9 cut(s)	298, 369, 492, 500, 622, 842, 2636, 3870, 4111
BcuI	ACTAGT	1 cut(s)	3793
BfmI	CTRYAG	3 cut(s)	345, 651, 1139
BfoI	RGCGCY	1 cut(s)	4345
BfuAI	ACCTGC	1 cut(s)	4303
BglII	AGATCT	2 cut(s)	1309, 2092
BisI	GCNGC	4 cut(s)	732, 1152, 1260, 1407
BlpI	GCTNAGC	2 cut(s)	4299, 4392
BlsI	GCNGC	4 cut(s)	733, 1153, 1261, 1408
BmcAI	AGTACT	3 cut(s)	1546, 3064, 3382
Bme18I	GGWCC	8 cut(s)	149, 460, 811, 1280, 3188, 3215, 3230, 4415
BmeT110I	CYCGRG	4 cut(s)	145, 371, 1317, 4583
BmgBI	CACGTC	1 cut(s)	1044
BmrI	ACTGGG	4 cut(s)	29, 225, 2870, 3187
BmuI	ACTGGG	4 cut(s)	29, 225, 2870, 3187
BoxI	GACNNNNGTC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	549, 678
BplI	GAGNNNNNCTC	4 cut(s)	1070, 1102, 4183, 4215
BpmI	CTGGAG	9 cut(s)	1659, 1845, 1944, 2442, 2574, 2700, 3330, 3545, 4472
Bpu10I	CCTNAGC	3 cut(s)	377, 1062, 1656
Bpu1102I	GCTNAGC	2 cut(s)	4299, 4392
BpuEI	CTTGAG	7 cut(s)	190, 726, 824, 1226, 3307, 4832, 5069
BpuMI	CCSGG	6 cut(s)	448, 676, 749, 1461, 4584, 4585
BsaAI	YACGTR	1 cut(s)	4496
BsaHI	GRCGYC	1 cut(s)	4335
BsaI	GGTCTC	2 cut(s)	369, 492
BsaJI	CCNNGG	7 cut(s)	119, 144, 1773, 2523, 2938, 4583, 4584
BsaWI	WCCGGW	4 cut(s)	462, 1198, 3057, 3814
BsaXI	ACNNNNNCTCC	8 cut(s)	1791, 1821, 1931, 1961, 2082, 2112, 2635, 2665
Bse118I	RCCGGY	1 cut(s)	1198
Bse21I	CCTNAGG	2 cut(s)	815, 2802
Bse3DI	GCAATG	3 cut(s)	322, 1445, 3650
BseAI	TCCGGA	1 cut(s)	3057
BseDI	CCNNGG	7 cut(s)	119, 144, 1773, 2523, 2938, 4583, 4584
BseGI	GGATG	9 cut(s)	570, 2251, 2510, 2983, 3463, 3559, 3920, 4624, 4672
BseMI	GCAATG	3 cut(s)	322, 1445, 3650
BseRI	GAGGAG	5 cut(s)	1238, 1903, 1952, 2133, 3608
BseSI	GKGCMC	3 cut(s)	1859, 2153, 3762
BseXI	GCAGC	3 cut(s)	1138, 1271, 1418
BseYI	CCCAGC	2 cut(s)	2153, 2611
BsgI	GTGCAG	2 cut(s)	1335, 5018
Bsh1236I	CGCG	1 cut(s)	3184
BshNI	GGYRCC	3 cut(s)	2009, 3757, 5007
BshTI	ACCGGT	1 cut(s)	1198
BsiHKAI	GWGCWC	1 cut(s)	2510
BsiHKCI	CYCGRG	4 cut(s)	145, 371, 1317, 4583
BsiSI	CCGG	9 cut(s)	447, 463, 675, 748, 1199, 1460, 3058, 3815, 4584
BslFI	GGGAC	5 cut(s)	30, 135, 232, 3216, 3475
BsmAI	GTCTC	9 cut(s)	298, 369, 492, 500, 622, 842, 2636, 3870, 4111
BsmFI	GGGAC	5 cut(s)	30, 135, 232, 3216, 3475
BsmI	GAATGC	1 cut(s)	1623
Bso31I	GGTCTC	2 cut(s)	369, 492
BsoBI	CYCGRG	4 cut(s)	145, 371, 1317, 4583
Bsp120I	GGGCCC	1 cut(s)	2149
Bsp1286I	GDGCHC	4 cut(s)	1859, 2153, 2510, 3762
Bsp13I	TCCGGA	1 cut(s)	3057
Bsp1407I	TGTACA	1 cut(s)	1534
Bsp1720I	GCTNAGC	2 cut(s)	4299, 4392
BspACI	CCGC	5 cut(s)	361, 731, 3024, 3509, 4799
BspEI	TCCGGA	1 cut(s)	3057
BspFNI	CGCG	1 cut(s)	3184
BspHI	TCATGA	2 cut(s)	2734, 2767
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	4303
BspPI	GGATC	9 cut(s)	666, 1553, 2719, 2797, 3506, 3519, 3652, 4750, 4782
BspQI	GCTCTTC	1 cut(s)	3834
BspT107I	GGYRCC	3 cut(s)	2009, 3757, 5007
BspTNI	GGTCTC	2 cut(s)	369, 492
BsrDI	GCAATG	3 cut(s)	322, 1445, 3650
BsrFI	RCCGGY	1 cut(s)	1198
BsrGI	TGTACA	1 cut(s)	1534
BssAI	RCCGGY	1 cut(s)	1198
BssECI	CCNNGG	7 cut(s)	119, 144, 1773, 2523, 2938, 4583, 4584
BssNAI	GTATAC	3 cut(s)	1648, 1989, 2229
BssNI	GRCGYC	1 cut(s)	4335
BssT1I	CCWWGG	2 cut(s)	1773, 2523
Bst1107I	GTATAC	3 cut(s)	1648, 1989, 2229
Bst6I	CTCTTC	4 cut(s)	2137, 3024, 3834, 5085
BstACI	GRCGYC	1 cut(s)	4335
BstAPI	GCANNNNNTGC	3 cut(s)	1841, 3104, 3797
BstAUI	TGTACA	1 cut(s)	1534
BstBAI	YACGTR	1 cut(s)	4496
BstEII	GGTNACC	3 cut(s)	450, 2606, 4680
BstENI	CCTNNNNNAGG	1 cut(s)	1472
BstF5I	GGATG	9 cut(s)	570, 2251, 2510, 2983, 3463, 3559, 3920, 4624, 4672
BstFNI	CGCG	1 cut(s)	3184
BstH2I	RGCGCY	1 cut(s)	4345
BstHHI	GCGC	3 cut(s)	3184, 3453, 4344
BstMAI	GTCTC	9 cut(s)	298, 369, 492, 500, 622, 842, 2636, 3870, 4111
BstNSI	RCATGY	3 cut(s)	1406, 3118, 3243
BstPAI	GACNNNNGTC	1 cut(s)	465
BstPI	GGTNACC	3 cut(s)	450, 2606, 4680
BstSFI	CTRYAG	3 cut(s)	345, 651, 1139
BstSLI	GKGCMC	3 cut(s)	1859, 2153, 3762
BstUI	CGCG	1 cut(s)	3184
BstV1I	GCAGC	3 cut(s)	1138, 1271, 1418
BstV2I	GAAGAC	2 cut(s)	549, 678
BstX2I	RGATCY	6 cut(s)	671, 1309, 2092, 2789, 3511, 3644
BstYI	RGATCY	6 cut(s)	671, 1309, 2092, 2789, 3511, 3644
BstZ17I	GTATAC	3 cut(s)	1648, 1989, 2229
Bsu36I	CCTNAGG	2 cut(s)	815, 2802
BtgZI	GCGATG	1 cut(s)	2240
BtrI	CACGTC	1 cut(s)	1044
BtsCI	GGATG	9 cut(s)	570, 2251, 2510, 2983, 3463, 3559, 3920, 4624, 4672
BtsI	GCAGTG	2 cut(s)	297, 4269
BveI	ACCTGC	1 cut(s)	4303
CaiI	CAGNNNCTG	2 cut(s)	89, 353
CciI	TCATGA	2 cut(s)	2734, 2767
CfoI	GCGC	3 cut(s)	3184, 3453, 4344
Cfr10I	RCCGGY	1 cut(s)	1198
Cfr9I	CCCGGG	1 cut(s)	4583
CseI	GACGC	1 cut(s)	729
CsiI	ACCWGGT	2 cut(s)	1756, 3226
CspAI	ACCGGT	1 cut(s)	1198
CspCI	CAANNNNNGTGG	6 cut(s)	310, 345, 829, 864, 2395, 2430
DraI	TTTAAA	1 cut(s)	2458
Eam1104I	CTCTTC	4 cut(s)	2137, 3024, 3834, 5085
EarI	CTCTTC	4 cut(s)	2137, 3024, 3834, 5085
Eco130I	CCWWGG	2 cut(s)	1773, 2523
Eco147I	AGGCCT	2 cut(s)	68, 143
Eco24I	GRGCYC	1 cut(s)	2153
Eco31I	GGTCTC	2 cut(s)	369, 492
Eco32I	GATATC	1 cut(s)	4241
Eco47I	GGWCC	8 cut(s)	149, 460, 811, 1280, 3188, 3215, 3230, 4415
Eco81I	CCTNAGG	2 cut(s)	815, 2802
Eco88I	CYCGRG	4 cut(s)	145, 371, 1317, 4583
Eco91I	GGTNACC	3 cut(s)	450, 2606, 4680
EcoNI	CCTNNNNNAGG	1 cut(s)	1472
EcoO109I	RGGNCCY	4 cut(s)	149, 974, 2149, 2150
EcoO65I	GGTNACC	3 cut(s)	450, 2606, 4680
EcoRI	GAATTC	3 cut(s)	235, 1767, 4431
EcoRV	GATATC	1 cut(s)	4241
EcoT14I	CCWWGG	2 cut(s)	1773, 2523
EcoT22I	ATGCAT	2 cut(s)	1370, 3428
EcoT38I	GRGCYC	1 cut(s)	2153
ErhI	CCWWGG	2 cut(s)	1773, 2523
FalI	AAGNNNNNCTT	4 cut(s)	1436, 1468, 1591, 1623
FaqI	GGGAC	5 cut(s)	30, 135, 232, 3216, 3475
FauNDI	CATATG	3 cut(s)	2617, 2716, 4402
FbaI	TGATCA	2 cut(s)	1489, 5034
FblI	GTMKAC	7 cut(s)	499, 1138, 1647, 1988, 2228, 4968, 4986
Fnu4HI	GCNGC	4 cut(s)	732, 1152, 1260, 1407
FokI	GGATG	9 cut(s)	577, 2258, 2497, 2990, 3470, 3566, 3927, 4631, 4679
FriOI	GRGCYC	1 cut(s)	2153
Fsp4HI	GCNGC	4 cut(s)	732, 1152, 1260, 1407
FspI	TGCGCA	1 cut(s)	3452
GlaI	GCGC	3 cut(s)	3183, 3452, 4343
GluI	GCNGC	4 cut(s)	732, 1152, 1260, 1407
GsaI	CCCAGC	2 cut(s)	2157, 2615
GsuI	CTGGAG	9 cut(s)	1659, 1845, 1944, 2442, 2574, 2700, 3330, 3545, 4472
HaeII	RGCGCY	1 cut(s)	4345
HapII	CCGG	9 cut(s)	447, 463, 675, 748, 1199, 1460, 3058, 3815, 4584
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	3 cut(s)	3184, 3453, 4344
Hin1I	GRCGYC	1 cut(s)	4335
Hin6I	GCGC	3 cut(s)	3182, 3451, 4342
HinP1I	GCGC	3 cut(s)	3182, 3451, 4342
HincII	GTYRAC	4 cut(s)	1130, 1950, 3007, 4969
HindII	GTYRAC	4 cut(s)	1130, 1950, 3007, 4969
HindIII	AAGCTT	3 cut(s)	623, 3635, 4730
HpaII	CCGG	9 cut(s)	447, 463, 675, 748, 1199, 1460, 3058, 3815, 4584
Hpy99I	CGWCG	2 cut(s)	1048, 4340
HpyCH4IV	ACGT	8 cut(s)	908, 1043, 1418, 2076, 2912, 2929, 4335, 4495
HpySE526I	ACGT	8 cut(s)	908, 1043, 1418, 2076, 2912, 2929, 4335, 4495
Hsp92I	GRCGYC	1 cut(s)	4335
HspAI	GCGC	3 cut(s)	3182, 3451, 4342
KflI	GGGWCCC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	3057
Ksp22I	TGATCA	2 cut(s)	1489, 5034
LguI	GCTCTTC	1 cut(s)	3834
LmnI	GCTCC	6 cut(s)	1071, 1925, 2546, 3526, 3918, 4927
Lsp1109I	GCAGC	3 cut(s)	1138, 1271, 1418
MabI	ACCWGGT	2 cut(s)	1756, 3226
MaeII	ACGT	8 cut(s)	908, 1043, 1418, 2076, 2912, 2929, 4335, 4495
MfeI	CAATTG	4 cut(s)	327, 1332, 2844, 3123
MflI	RGATCY	6 cut(s)	671, 1309, 2092, 2789, 3511, 3644
MhlI	GDGCHC	4 cut(s)	1859, 2153, 2510, 3762
MmeI	TCCRAC	5 cut(s)	789, 891, 2068, 3104, 3583
Mph1103I	ATGCAT	2 cut(s)	1370, 3428
MroI	TCCGGA	1 cut(s)	3057
MroXI	GAANNNNTTC	3 cut(s)	1606, 2931, 3564
MseI	TTAA	6 cut(s)	1289, 1568, 1574, 2357, 2457, 3969
MslI	CAYNNNNRTG	4 cut(s)	1363, 2582, 2866, 3446
MspA1I	CMGCKG	1 cut(s)	4391
MspI	CCGG	9 cut(s)	447, 463, 675, 748, 1199, 1460, 3058, 3815, 4584
MunI	CAATTG	4 cut(s)	327, 1332, 2844, 3123
Mva1269I	GAATGC	1 cut(s)	1623
MvnI	CGCG	1 cut(s)	3184
NciI	CCSGG	6 cut(s)	448, 676, 749, 1461, 4584, 4585
NdeI	CATATG	3 cut(s)	2617, 2716, 4402
NsbI	TGCGCA	1 cut(s)	3452
NsiI	ATGCAT	2 cut(s)	1370, 3428
NspI	RCATGY	3 cut(s)	1406, 3118, 3243
PaeI	GCATGC	1 cut(s)	1406
PagI	TCATGA	2 cut(s)	2734, 2767
PceI	AGGCCT	2 cut(s)	68, 143
PciSI	GCTCTTC	1 cut(s)	3834
PcsI	WCGNNNNNNNCGW	1 cut(s)	2082
PctI	GAATGC	1 cut(s)	1623
PdmI	GAANNNNTTC	3 cut(s)	1606, 2931, 3564
PflMI	CCANNNNNTGG	1 cut(s)	3250
PinAI	ACCGGT	1 cut(s)	1198
PkrI	GCNGC	4 cut(s)	733, 1153, 1261, 1408
Ppu21I	YACGTR	1 cut(s)	4496
PpuMI	RGGWCCY	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	465
PshBI	ATTAAT	2 cut(s)	1568, 3969
PsiI	TTATAA	3 cut(s)	1823, 2031, 4856
Psp1406I	AACGTT	2 cut(s)	1418, 2076
Psp5II	RGGWCCY	1 cut(s)	149
PspEI	GGTNACC	3 cut(s)	450, 2606, 4680
PspFI	CCCAGC	2 cut(s)	2153, 2611
PspOMI	GGGCCC	1 cut(s)	2149
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	2 cut(s)	89, 353
PsuI	RGATCY	6 cut(s)	671, 1309, 2092, 2789, 3511, 3644
PvuII	CAGCTG	1 cut(s)	4391
RseI	CAYNNNNRTG	4 cut(s)	1363, 2582, 2866, 3446
SalI	GTCGAC	1 cut(s)	4967
SapI	GCTCTTC	1 cut(s)	3834
SaqAI	TTAA	6 cut(s)	1289, 1568, 1574, 2357, 2457, 3969
SatI	GCNGC	4 cut(s)	732, 1152, 1260, 1407
ScaI	AGTACT	3 cut(s)	1546, 3064, 3382
SduI	GDGCHC	4 cut(s)	1859, 2153, 2510, 3762
SexAI	ACCWGGT	2 cut(s)	1756, 3226
SfcI	CTRYAG	3 cut(s)	345, 651, 1139
SinI	GGWCC	8 cut(s)	149, 460, 811, 1280, 3188, 3215, 3230, 4415
SmaI	CCCGGG	1 cut(s)	4585
SmiMI	CAYNNNNRTG	4 cut(s)	1363, 2582, 2866, 3446
SmlI	CTYRAG	7 cut(s)	205, 741, 839, 1205, 3286, 4811, 5084
SmoI	CTYRAG	7 cut(s)	205, 741, 839, 1205, 3286, 4811, 5084
SpeI	ACTAGT	1 cut(s)	3793
SphI	GCATGC	1 cut(s)	1406
SseBI	AGGCCT	2 cut(s)	68, 143
SsiI	CCGC	5 cut(s)	361, 731, 3024, 3509, 4799
SspI	AATATT	4 cut(s)	1704, 1819, 2703, 3017
StuI	AGGCCT	2 cut(s)	68, 143
StyI	CCWWGG	2 cut(s)	1773, 2523
TaiI	ACGT	8 cut(s)	911, 1046, 1421, 2079, 2915, 2932, 4338, 4498
TaqI	TCGA	9 cut(s)	137, 643, 780, 2210, 3985, 4152, 4458, 4716, 4968
TaqII	GACCGA	1 cut(s)	2056
TatI	WGTACW	7 cut(s)	1534, 1544, 1694, 3062, 3380, 4221, 5063
TauI	GCSGC	1 cut(s)	734
Tru1I	TTAA	6 cut(s)	1289, 1568, 1574, 2357, 2457, 3969
Tru9I	TTAA	6 cut(s)	1289, 1568, 1574, 2357, 2457, 3969
TseI	GCWGC	3 cut(s)	1151, 1259, 1406
TspGWI	ACGGA	4 cut(s)	61, 532, 3098, 4905
TspMI	CCCGGG	1 cut(s)	4583
Van91I	CCANNNNNTGG	1 cut(s)	3250
VpaK11BI	GGWCC	8 cut(s)	149, 460, 811, 1280, 3188, 3215, 3230, 4415
VspI	ATTAAT	2 cut(s)	1568, 3969
XagI	CCTNNNNNAGG	1 cut(s)	1472
XbaI	TCTAGA	1 cut(s)	3394
XceI	RCATGY	3 cut(s)	1406, 3118, 3243
XmaI	CCCGGG	1 cut(s)	4583
XmiI	GTMKAC	7 cut(s)	499, 1138, 1647, 1988, 2228, 4968, 4986
XmnI	GAANNNNTTC	3 cut(s)	1606, 2931, 3564
ZraI	GACGTC	1 cut(s)	4336
ZrmI	AGTACT	3 cut(s)	1546, 3064, 3382
Zsp2I	ATGCAT	2 cut(s)	1370, 3428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.