Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006854

Physical Location & Seq

Genomic Coordinates Forward (+)

83044883 .. 83059140

Gene Structure 14258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5151 bp

ATGGAGGACAATGTAGAGCAACCAGGCAAAGACCCAGTTGAGAGTCCCCAAGTTTCTGAGAAGCAGGCCTCCGTTGGTTCATCAGAAACTGCAAAAAGAGTTACCAAGACAGTGAAACCTGGGGCTTCAGTGACATCGAAGGCCTCGGGTCCCATTAGTAGTGTTAGAAAGAAAGTAGAGGCGAAAAGTGGTTTGAATTCTAGCTCAAGTGCAACGAAGTCAAGTGCAACTGGGACTTCCAGAAGTTTGAATTCAGTTCCAGTAGCAAGGCGAAACAGCACTGGTGGTTTGCCTCAGAAGCCGTCAGTCTCCACTGCTAGACAGCAGAGCAATGCCACTCCGATTGCAGGCAATAAGTCTGCAGACCCTGTAAGGCGGTCTCTCCCCGAGCTTAGGAGAAGTTCTTTGCCTTCAGTAGTTACAAAATCAACCAGTGTTTCACAGGCTGTAAAGTTGTCTGCCGGGTCACCATTGGACCGGAGTCTGAATAAACCATCGGGTTCTCTTGCAAGTAGACAAGAGACTGTCAGGAAGCCTTCTGTCAAGCCAGCATCGTCCGTTTCATCTTCGTCTTCAAGGATGACAACTTCTTCATTGGACAGTAGTGCTAGTAGTGGAGTCAGGAAGTCAGTCTCAAAGCTTTCTTCCTCATCAGCTCGATCACCTACAGTTACCAGTGGACTGAGATCCGGGTCTTTGTCTTCGTCTATGAATAGTAGTGCTAGTTTATCTGGACGCAGGAAAGTGGCAACACCTCAAGGCCGGGATTCTCGGTTTATTGTTCTTCCAAAGGTGGAAATCAAAGCTGGTGATGATCTGAGGTTGGACCTTAGGGGTCACAGAGTTCGCAGTCTCAAGGCCAGTGGGTTGAACTTGTCACCAAATTTAGAGTTTGTTTATCTCAGAGATAATCTTTTATCTACGTTGGAAGGGGTTGAAATACTGACGAGAGTAAAGGTTCTTGATTTGAGTTTCAATGATTTCAAAGGGCCTGGATTTGAACCTCTTGAAAATTGCAGAGTCTTACAGCAACTCTATCTGGCTGGAAATCAAATCACGTCGCTTGCAAGCCTCCCTCAGCTCCCCAATTTGGAGTTCCTCTCTGTTGCTCAAAATAAGTTGAAGAATCTTACAATGGCAAGTCAACCTCGTTTACAGGTATTAGCTGCCAGCAAAAACAAAATTTCAACTCTAAAGGGATTCCCGTATTTACCGGTTCTTGAGCATTTACGAGTGGAGGAAAATCCTATACTAAAAATGCCTCATGTAGAAGCAGCTTCCATTTTGCTTGCTGGTCCTACCTTAAAAAAGTTCAATGACAGAGATCTTTCCCGAGAACAGGTAGCAATTGCAAAGCGTTATCCTGCACACACATCATTATGCATTAGAGATGGTTGGGAGTTTTGCCGTCCAGAGCATGCAGCAGACTCAACGTTTCGCTTCCTAGTTGAGCAATGGAAGGATAACTTGCCTCCGGGCTTCCTCGTCAAGGAGGCCTTTATTGATCAGCCATTTGAAGAAGATACTTGTCGCTGTCACTTCTCTTTTGTACAAGACAGTACTTTGGTCACTGATCCACAATTAATCTTAAAATATCAGTGGTTTGTAGGAGAAAGAACACCTTCCAATTTCACCAGCATTCCTGATGCCACTGGAGAGGTATACTGGCCTAAGCATGAAGATATCGGTAAAATTTTGAAAGTGGAATGTACTCCAATATTAGGAGAAATGGAGTACCCTCCTATTTTTGCTATATCTTCATCAGTTTCACCAGGTACTGGAATTCCCAAGGTTGTGAACCTTGATGTTCGTGGAGAACTGGTGGAGGGAAATATTATAAGGGGCTATGCAGAGATTGCGTGGTGTGGCGGCACTCCAGCAAAAGGTGTTTCTAGTTGGTTGAGGAGGAAATGGAACAGCAGTCCTGTGGTTATTGCTGGAGCTGAAGATGAGGAGTATAAGTTGACCATAGATGATATCGATACAAGTTTGGTTTTCATGTATACACCAGTGACAGAAGAAGGTGCCAAAGGAGAACCCCATTATAAATACACCGATTTTGTAAAATCAGCACCGCCATCAGTCAATAATGTTCAAATTGTTGGAGATCTTGTTGAAGGAACTACCATCAGAGGAGTTGGTGATTACTTTGGAGGAAGAGAGGGCCCCAGCAAGTTTGAATGGTTACGTGAGCATAGCGACAGTGGAAACTCTGTTTTGTTATCAACTGGTACATCCGAGTATACTTTGAGCAAGGAGGATGTTGGGCATCGCTTGGCTTTTGCATATATACCTATCAATTTTGAAGGGCAAGAAGGGGAATCTGTTTCAATACTGTCCGATGTGGTGAAGCAAGCACCTCCGAAGGTATTAAATCTGAAGATAATAGGTGATATGAAGGAGAACAGTAAGGTTACTGCCACTGGTATTGTCACTGGAGGAACTGAAGGTTCTAGCAGGGTACAGTGGTTTAAAACAAGGTTCTCAACTTTGGAGGGTGAGAAGGGTCTTGAAGCGTTGAGCACATCCAAGATTGCCAAGACGTTTCGCGTACCATTGGGAGCTGTTGGCTATTACATTGTTGCAAAATTCACTCCTATGACTCCAGATGGTGAATCTGGTGACCCAGCATATGTCATTTCAGATACAGCAGTTGAGACTCTGCCTCCTAGCCTGAATTTCTTATCTATTACTGGAGATTACTCGGAAGGTGGAATATTGACTGGATCATATGGTTATATCGGTGGTCATGAAGGAAAAAGTATCTATAATTGGTATATTCATGAGGTTGAAACTGATTCCGGATCTCTAATACCTGAGGTCACAGGGCTTCTTCAGTATCGTATTACAAAAGATGCAATTGGTAAATTCATTTCATTCCAATGTACCCCAGTGCGTGATGATGGGATTGTGGGTGAACCAACAACGTGCATGGGCCAGGAACGTGTTCGCCCTGGAAGCCCTAGATTGCTTTCCCTACGAATTGTCGGGGATGCCACTGAAGGTACTTCACTTACTGTTGACAAAAAATATTGGGGCGGTGAAGAGGGAGATTCACTTTTCTACTGGTTCCGGAGTACTTCAGATGGAACTCCAACGGAAATTAGGGGTGCAACTACTGCTTCATACATGCTCTCAATTGATGACATTGGCTTCTTTATCTCAGTGTCGTGTGAGCCTGTCAGAAGTGACTGGGCGCGTGGTCCTACTGTTCTTTCCGAACAAATTGGACCTATAATACCTGGTCCCCCAACATGCCACTCTTTGGAGTTTCTTGGTTCAATGATTGAAGGACAACGCTTGAGCGTTATTGCTTCTTATACTGGAGGGGAGAAAGGAAATTGCTTCCATGAATGGTTTAGAGTGAAAAGTAATGGTGTCAAGGAGAAATTGAGTACTCAGGATTTTCTAGATTTGACTCTTGATGATGTGGGAAGATGCGTTGAACTTGTTTACACCCCTATGCGCAAGGATGGGACGAGAGGAAATCCTATGAGCATAAAATCTGATGTGGTTGGCCCTGCGGATCCTGAAGGACTGGAGCTTATCATTCCTGATTGCTGTGAGGATGAAGAATTGGTTCCAGAAAAAACATACTTTGGTGGAGAGGAGGGTGTTGGAGAATATATTTGGTACAGAACGAAGAATAAGCTTCATGGATCTGCATTGCTGGATATATCTAATTTGAATGAAGATGTTGGTATATGCAGTAAAACACTAACATATAAACCAGCACTTGAAGATGTTGGGGCTTATTTGGCCCTATATTGGGTGCCCACCCGTAAAGATGGTAAATGTGGGAAGGCACTAGTTGCAATTTGCAACTCTACGGTTGCACCAGCTCTTCCTGTGGTTTCTAATGTTCGTGTGAAGAAGGTGTCTCTGTCTGTTTATTCTGGGGAAGGAGAGTATTTTGGTGGATATAAGGGATGGAGCCTTTTTAGCTGGTATAGAGAAACTAATAGAGAAACTAATGATGGAACTATCAGTCTTATTAATGGGGCCAACTCTCGAACTTATGAAGTCACTGATGCAGACTACAACTGCCGTTTATTGTTTGGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTACAAGCAAGATGTCAGATATCAATGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATACTGAAACTGGACCAATACTACCAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGCTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCAATGGTTGGGAGTCCTGATCTTATCTCTATACCCGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAAGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCGGTAGGAACTCTTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTTTCATGTGGAGCTGTTCCGAAATGACCAGCATCGTCTGAGAATTGTAGTCGACAGTGAGAGTGAAGTAGACCTGATGGTGCAGTCCAGGCACCTTAGAGATGTTATTGTGCTTGTGATCAGAGGCTTTGCTCAGAGATTCAATAGTACATCACTCAATACTCTTCTCAAGATAGAACATAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

1716

Amino Acids

187.79

Weight (kDa)

6.42

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	342 - 378	1.3e-06	Leucine Rich repeats (2 copies)
IG_AIR9	PF23197	497 - 585	1.5e-09	AIR9 A9 domain
IG_AIR9	PF23197	598 - 682	3.1e-19	AIR9 A9 domain
IG_AIR9	PF23197	694 - 780	2.9e-33	AIR9 A9 domain
IG_AIR9	PF23197	790 - 881	3.7e-14	AIR9 A9 domain
IG_AIR9	PF23197	892 - 978	6.5e-23	AIR9 A9 domain
IG_AIR9	PF23197	992 - 1071	1e-20	AIR9 A9 domain
IG_AIR9	PF23197	1086 - 1168	6.7e-24	AIR9 A9 domain
IG_AIR9	PF23197	1183 - 1271	3e-16	AIR9 A9 domain
IG_AIR9	PF23197	1296 - 1368	3.6e-15	AIR9 A9 domain
IG_AIR9	PF23197	1490 - 1575	6.2e-20	AIR9 A9 domain
PH_AIR9	PF23218	1605 - 1701	4.5e-52	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34680 AT2G34680
fragaria_vesca	FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950 FvH4_3g09950
malus_domestica	MD05G1274500.v1.1 MD10G1254200.v1.1
prunus_persica	Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1 Prupe.4G089200_v2.0.a1
pyrus_communis	pycom05g25590 pycom10g20990
rosa_chinensis	RchiOBHm_Chr5g0015701
rosa_laevigata	RLG00000032220
rosa_multiflora	Rmu_sc0000843.1_g000009
rosa_roxburghii	Rroxscaffold_1G00060820
rosa_rugosa	Rorug05G0029200 Rorug05G0029200 Rorug05G0029300
rosa_samantha	Rh5AG122500 Rh5BG121800 Rh5CG132000 Rh5DG120500
rosa_wichuraiana	Rw5G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1838, 2046, 4901
AatII	GACGTC	1 cut(s)	4365
Acc16I	TGCGCA	1 cut(s)	3467
Acc36I	ACCTGC	1 cut(s)	4330
AccB1I	GGYRCC	3 cut(s)	2024, 3772, 5052
AccB7I	CCANNNNNTGG	2 cut(s)	1778, 3265
AccI	GTMKAC	6 cut(s)	514, 1662, 2003, 2243, 5013, 5031
AccII	CGCG	2 cut(s)	2550, 3199
AccIII	TCCGGA	2 cut(s)	2801, 3072
AciI	CCGC	6 cut(s)	376, 1869, 2075, 3039, 3524, 4844
AclI	AACGTT	1 cut(s)	1433
AcyI	GRCGYC	1 cut(s)	4362
AflIII	ACRYGT	1 cut(s)	2944
AgeI	ACCGGT	1 cut(s)	1213
AhlI	ACTAGT	1 cut(s)	3808
AjiI	CACGTC	1 cut(s)	1059
AjuI	GAANNNNNNNTTGG	4 cut(s)	1079, 1111, 4907, 4939
Alw21I	GWGCWC	1 cut(s)	2525
Alw26I	GTCTC	8 cut(s)	313, 384, 515, 637, 857, 2651, 3885, 4138
AlwNI	CAGNNNCTG	3 cut(s)	89, 368, 1778
Ama87I	CYCGRG	4 cut(s)	145, 386, 1332, 4610
Aor13HI	TCCGGA	2 cut(s)	2801, 3072
ApaI	GGGCCC	1 cut(s)	2168
ApeKI	GCWGC	3 cut(s)	1166, 1274, 1421
AseI	ATTAAT	2 cut(s)	1583, 3996
AsiGI	ACCGGT	1 cut(s)	1213
Asp700I	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
AspLEI	GCGC	3 cut(s)	3199, 3468, 4371
AsuC2I	CCSGG	6 cut(s)	463, 691, 764, 1476, 4611, 4612
AvaI	CYCGRG	4 cut(s)	145, 386, 1332, 4610
AvaII	GGWCC	8 cut(s)	149, 475, 826, 1295, 3203, 3230, 3245, 4442
AxyI	CCTNAGG	2 cut(s)	830, 2817
BaeGI	GKGCMC	2 cut(s)	2168, 3777
BaeI	ACNNNNGTAYC	4 cut(s)	2453, 2486, 2637, 2670
BamHI	GGATCC	1 cut(s)	3526
BanI	GGYRCC	3 cut(s)	2024, 3772, 5052
BanII	GRGCYC	1 cut(s)	2168
BbsI	GAAGAC	2 cut(s)	564, 693
Bbv12I	GWGCWC	1 cut(s)	2525
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	3 cut(s)	1153, 1286, 1433
BceAI	ACGGC	3 cut(s)	286, 1392, 4032
BclI	TGATCA	2 cut(s)	1504, 5079
BcnI	CCSGG	6 cut(s)	463, 691, 764, 1476, 4611, 4612
BcoDI	GTCTC	8 cut(s)	313, 384, 515, 637, 857, 2651, 3885, 4138
BcuI	ACTAGT	1 cut(s)	3808
BfmI	CTRYAG	2 cut(s)	360, 666
BfoI	RGCGCY	1 cut(s)	4372
BfuAI	ACCTGC	1 cut(s)	4330
BglII	AGATCT	2 cut(s)	1324, 2107
BisI	GCNGC	4 cut(s)	1167, 1275, 1422, 1870
BlpI	GCTNAGC	2 cut(s)	4326, 4419
BlsI	GCNGC	4 cut(s)	1168, 1276, 1423, 1871
BmcAI	AGTACT	3 cut(s)	1561, 3079, 3397
Bme18I	GGWCC	8 cut(s)	149, 475, 826, 1295, 3203, 3230, 3245, 4442
BmeT110I	CYCGRG	4 cut(s)	145, 386, 1332, 4610
BmgBI	CACGTC	1 cut(s)	1059
BmrI	ACTGGG	4 cut(s)	29, 240, 2885, 3202
BmuI	ACTGGG	4 cut(s)	29, 240, 2885, 3202
BoxI	GACNNNNGTC	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	564, 693
BplI	GAGNNNNNCTC	4 cut(s)	1085, 1117, 4210, 4242
BpmI	CTGGAG	9 cut(s)	1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4499
Bpu10I	CCTNAGC	3 cut(s)	392, 1077, 1671
Bpu1102I	GCTNAGC	2 cut(s)	4326, 4419
BpuEI	CTTGAG	7 cut(s)	190, 741, 839, 1241, 3322, 4877, 5114
BpuMI	CCSGG	6 cut(s)	463, 691, 764, 1476, 4611, 4612
Bsa29I	ATCGAT	1 cut(s)	1980
BsaAI	YACGTR	2 cut(s)	2189, 4523
BsaHI	GRCGYC	1 cut(s)	4362
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	6 cut(s)	119, 144, 1788, 2953, 4610, 4611
BsaWI	WCCGGW	4 cut(s)	477, 1213, 2801, 3072
BsaXI	ACNNNNNCTCC	8 cut(s)	1806, 1836, 1946, 1976, 2097, 2127, 2650, 2680
Bse118I	RCCGGY	1 cut(s)	1213
Bse21I	CCTNAGG	2 cut(s)	830, 2817
Bse3DI	GCAATG	3 cut(s)	337, 1460, 3665
BseAI	TCCGGA	2 cut(s)	2801, 3072
BseCI	ATCGAT	1 cut(s)	1980
BseDI	CCNNGG	6 cut(s)	119, 144, 1788, 2953, 4610, 4611
BseMI	GCAATG	3 cut(s)	337, 1460, 3665
BseRI	GAGGAG	4 cut(s)	1918, 1967, 2148, 3623
BseSI	GKGCMC	2 cut(s)	2168, 3777
BseXI	GCAGC	3 cut(s)	1153, 1286, 1433
BseYI	CCCAGC	2 cut(s)	2168, 2626
BsgI	GTGCAG	2 cut(s)	1350, 5063
Bsh1236I	CGCG	2 cut(s)	2550, 3199
BshNI	GGYRCC	3 cut(s)	2024, 3772, 5052
BshTI	ACCGGT	1 cut(s)	1213
BshVI	ATCGAT	1 cut(s)	1980
BsiHKAI	GWGCWC	1 cut(s)	2525
BsiHKCI	CYCGRG	4 cut(s)	145, 386, 1332, 4610
BsiSI	CCGG	9 cut(s)	462, 478, 690, 763, 1214, 1475, 2802, 3073, 4611
BslFI	GGGAC	5 cut(s)	30, 135, 247, 3231, 3490
BsmAI	GTCTC	8 cut(s)	313, 384, 515, 637, 857, 2651, 3885, 4138
BsmFI	GGGAC	5 cut(s)	30, 135, 247, 3231, 3490
BsmI	GAATGC	1 cut(s)	1638
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	4 cut(s)	145, 386, 1332, 4610
Bsp120I	GGGCCC	1 cut(s)	2164
Bsp1286I	GDGCHC	3 cut(s)	2168, 2525, 3777
Bsp13I	TCCGGA	2 cut(s)	2801, 3072
Bsp1407I	TGTACA	1 cut(s)	1549
Bsp1720I	GCTNAGC	2 cut(s)	4326, 4419
BspACI	CCGC	6 cut(s)	376, 1869, 2075, 3039, 3524, 4844
BspDI	ATCGAT	1 cut(s)	1980
BspEI	TCCGGA	2 cut(s)	2801, 3072
BspFNI	CGCG	2 cut(s)	2550, 3199
BspHI	TCATGA	2 cut(s)	2749, 2782
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	4330
BspQI	GCTCTTC	1 cut(s)	3849
BspT107I	GGYRCC	3 cut(s)	2024, 3772, 5052
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	3 cut(s)	337, 1460, 3665
BsrFI	RCCGGY	1 cut(s)	1213
BsrGI	TGTACA	1 cut(s)	1549
BssAI	RCCGGY	1 cut(s)	1213
BssECI	CCNNGG	6 cut(s)	119, 144, 1788, 2953, 4610, 4611
BssNAI	GTATAC	3 cut(s)	1663, 2004, 2244
BssNI	GRCGYC	1 cut(s)	4362
BssT1I	CCWWGG	1 cut(s)	1788
Bst1107I	GTATAC	3 cut(s)	1663, 2004, 2244
Bst6I	CTCTTC	4 cut(s)	2152, 3039, 3849, 5130
BstACI	GRCGYC	1 cut(s)	4362
BstAPI	GCANNNNNTGC	3 cut(s)	1856, 3119, 3812
BstAUI	TGTACA	1 cut(s)	1549
BstBAI	YACGTR	2 cut(s)	2189, 4523
BstEII	GGTNACC	3 cut(s)	465, 2621, 4707
BstENI	CCTNNNNNAGG	1 cut(s)	1487
BstFNI	CGCG	2 cut(s)	2550, 3199
BstH2I	RGCGCY	1 cut(s)	4372
BstHHI	GCGC	3 cut(s)	3199, 3468, 4371
BstMAI	GTCTC	8 cut(s)	313, 384, 515, 637, 857, 2651, 3885, 4138
BstNSI	RCATGY	3 cut(s)	1421, 3133, 3258
BstPAI	GACNNNNGTC	1 cut(s)	480
BstPI	GGTNACC	3 cut(s)	465, 2621, 4707
BstSFI	CTRYAG	2 cut(s)	360, 666
BstSLI	GKGCMC	2 cut(s)	2168, 3777
BstUI	CGCG	2 cut(s)	2550, 3199
BstV1I	GCAGC	3 cut(s)	1153, 1286, 1433
BstV2I	GAAGAC	2 cut(s)	564, 693
BstX2I	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
BstYI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
BstZ17I	GTATAC	3 cut(s)	1663, 2004, 2244
Bsu15I	ATCGAT	1 cut(s)	1980
Bsu36I	CCTNAGG	2 cut(s)	830, 2817
BsuTUI	ATCGAT	1 cut(s)	1980
BtgZI	GCGATG	1 cut(s)	2255
BtrI	CACGTC	1 cut(s)	1059
BtsI	GCAGTG	2 cut(s)	312, 4296
BveI	ACCTGC	1 cut(s)	4330
CaiI	CAGNNNCTG	3 cut(s)	89, 368, 1778
CciI	TCATGA	2 cut(s)	2749, 2782
CfoI	GCGC	3 cut(s)	3199, 3468, 4371
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr9I	CCCGGG	1 cut(s)	4610
ClaI	ATCGAT	1 cut(s)	1980
CseI	GACGC	1 cut(s)	744
CsiI	ACCWGGT	2 cut(s)	1771, 3241
CspAI	ACCGGT	1 cut(s)	1213
CspCI	CAANNNNNGTGG	6 cut(s)	325, 360, 844, 879, 2410, 2445
DraI	TTTAAA	1 cut(s)	2473
Eam1104I	CTCTTC	4 cut(s)	2152, 3039, 3849, 5130
EarI	CTCTTC	4 cut(s)	2152, 3039, 3849, 5130
Eco130I	CCWWGG	1 cut(s)	1788
Eco147I	AGGCCT	3 cut(s)	68, 143, 1496
Eco24I	GRGCYC	1 cut(s)	2168
Eco31I	GGTCTC	1 cut(s)	384
Eco32I	GATATC	3 cut(s)	1684, 1978, 4268
Eco47I	GGWCC	8 cut(s)	149, 475, 826, 1295, 3203, 3230, 3245, 4442
Eco81I	CCTNAGG	2 cut(s)	830, 2817
Eco88I	CYCGRG	4 cut(s)	145, 386, 1332, 4610
Eco91I	GGTNACC	3 cut(s)	465, 2621, 4707
EcoNI	CCTNNNNNAGG	1 cut(s)	1487
EcoO109I	RGGNCCY	4 cut(s)	149, 989, 2164, 2165
EcoO65I	GGTNACC	3 cut(s)	465, 2621, 4707
EcoRI	GAATTC	4 cut(s)	196, 250, 1782, 4458
EcoRV	GATATC	3 cut(s)	1684, 1978, 4268
EcoT14I	CCWWGG	1 cut(s)	1788
EcoT22I	ATGCAT	1 cut(s)	1385
EcoT38I	GRGCYC	1 cut(s)	2168
ErhI	CCWWGG	1 cut(s)	1788
FalI	AAGNNNNNCTT	6 cut(s)	1451, 1483, 1481, 1513, 1606, 1638
FaqI	GGGAC	5 cut(s)	30, 135, 247, 3231, 3490
FauNDI	CATATG	2 cut(s)	2632, 2731
FbaI	TGATCA	2 cut(s)	1504, 5079
FblI	GTMKAC	6 cut(s)	514, 1662, 2003, 2243, 5013, 5031
Fnu4HI	GCNGC	4 cut(s)	1167, 1275, 1422, 1870
FriOI	GRGCYC	1 cut(s)	2168
Fsp4HI	GCNGC	4 cut(s)	1167, 1275, 1422, 1870
FspI	TGCGCA	1 cut(s)	3467
GlaI	GCGC	3 cut(s)	3198, 3467, 4370
GluI	GCNGC	4 cut(s)	1167, 1275, 1422, 1870
GsaI	CCCAGC	2 cut(s)	2172, 2630
GsuI	CTGGAG	9 cut(s)	1674, 1860, 1959, 2457, 2589, 2715, 3345, 3560, 4499
HaeII	RGCGCY	1 cut(s)	4372
HapII	CCGG	9 cut(s)	462, 478, 690, 763, 1214, 1475, 2802, 3073, 4611
HgaI	GACGC	1 cut(s)	744
HhaI	GCGC	3 cut(s)	3199, 3468, 4371
Hin1I	GRCGYC	1 cut(s)	4362
Hin6I	GCGC	3 cut(s)	3197, 3466, 4369
HinP1I	GCGC	3 cut(s)	3197, 3466, 4369
HincII	GTYRAC	4 cut(s)	1145, 1965, 3022, 5014
HindII	GTYRAC	4 cut(s)	1145, 1965, 3022, 5014
HindIII	AAGCTT	3 cut(s)	638, 3650, 4775
HpaII	CCGG	9 cut(s)	462, 478, 690, 763, 1214, 1475, 2802, 3073, 4611
Hpy99I	CGWCG	2 cut(s)	1063, 4367
HpyCH4IV	ACGT	9 cut(s)	923, 1058, 1433, 2188, 2543, 2927, 2944, 4362, 4522
HpySE526I	ACGT	9 cut(s)	923, 1058, 1433, 2188, 2543, 2927, 2944, 4362, 4522
Hsp92I	GRCGYC	1 cut(s)	4362
HspAI	GCGC	3 cut(s)	3197, 3466, 4369
KflI	GGGWCCC	1 cut(s)	149
Kpn2I	TCCGGA	2 cut(s)	2801, 3072
Ksp22I	TGATCA	2 cut(s)	1504, 5079
LguI	GCTCTTC	1 cut(s)	3849
LmnI	GCTCC	7 cut(s)	1086, 1940, 2561, 3541, 3933, 4343, 4972
Lsp1109I	GCAGC	3 cut(s)	1153, 1286, 1433
MabI	ACCWGGT	2 cut(s)	1771, 3241
MaeII	ACGT	9 cut(s)	923, 1058, 1433, 2188, 2543, 2927, 2944, 4362, 4522
MfeI	CAATTG	3 cut(s)	1347, 2859, 3138
MflI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
MhlI	GDGCHC	3 cut(s)	2168, 2525, 3777
MmeI	TCCRAC	5 cut(s)	804, 906, 2083, 3119, 3598
Mph1103I	ATGCAT	1 cut(s)	1385
MroI	TCCGGA	2 cut(s)	2801, 3072
MroXI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
MseI	TTAA	7 cut(s)	1304, 1583, 1589, 2372, 2472, 3996, 4758
MslI	CAYNNNNRTG	4 cut(s)	1378, 2597, 2881, 3461
MspA1I	CMGCKG	1 cut(s)	4418
MspI	CCGG	9 cut(s)	462, 478, 690, 763, 1214, 1475, 2802, 3073, 4611
MunI	CAATTG	3 cut(s)	1347, 2859, 3138
Mva1269I	GAATGC	1 cut(s)	1638
MvnI	CGCG	2 cut(s)	2550, 3199
NciI	CCSGG	6 cut(s)	463, 691, 764, 1476, 4611, 4612
NdeI	CATATG	2 cut(s)	2632, 2731
NsbI	TGCGCA	1 cut(s)	3467
NsiI	ATGCAT	1 cut(s)	1385
NspI	RCATGY	3 cut(s)	1421, 3133, 3258
PaeI	GCATGC	1 cut(s)	1421
PagI	TCATGA	2 cut(s)	2749, 2782
PceI	AGGCCT	3 cut(s)	68, 143, 1496
PciSI	GCTCTTC	1 cut(s)	3849
PcsI	WCGNNNNNNNCGW	1 cut(s)	4730
PctI	GAATGC	1 cut(s)	1638
PdmI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
PflMI	CCANNNNNTGG	2 cut(s)	1778, 3265
PinAI	ACCGGT	1 cut(s)	1213
PkrI	GCNGC	4 cut(s)	1168, 1276, 1423, 1871
Ppu21I	YACGTR	2 cut(s)	2189, 4523
PpuMI	RGGWCCY	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	480
PshBI	ATTAAT	2 cut(s)	1583, 3996
PsiI	TTATAA	3 cut(s)	1838, 2046, 4901
Psp1406I	AACGTT	1 cut(s)	1433
Psp5II	RGGWCCY	1 cut(s)	149
PspEI	GGTNACC	3 cut(s)	465, 2621, 4707
PspFI	CCCAGC	2 cut(s)	2168, 2626
PspOMI	GGGCCC	1 cut(s)	2164
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	3 cut(s)	89, 368, 1778
PsuI	RGATCY	6 cut(s)	686, 1324, 2107, 2804, 3526, 3659
PvuII	CAGCTG	1 cut(s)	4418
RseI	CAYNNNNRTG	4 cut(s)	1378, 2597, 2881, 3461
SalI	GTCGAC	1 cut(s)	5012
SapI	GCTCTTC	1 cut(s)	3849
SaqAI	TTAA	7 cut(s)	1304, 1583, 1589, 2372, 2472, 3996, 4758
SatI	GCNGC	4 cut(s)	1167, 1275, 1422, 1870
ScaI	AGTACT	3 cut(s)	1561, 3079, 3397
SduI	GDGCHC	3 cut(s)	2168, 2525, 3777
SexAI	ACCWGGT	2 cut(s)	1771, 3241
SfcI	CTRYAG	2 cut(s)	360, 666
SinI	GGWCC	8 cut(s)	149, 475, 826, 1295, 3203, 3230, 3245, 4442
SmaI	CCCGGG	1 cut(s)	4612
SmiMI	CAYNNNNRTG	4 cut(s)	1378, 2597, 2881, 3461
SmlI	CTYRAG	7 cut(s)	205, 756, 854, 1220, 3301, 4856, 5129
SmoI	CTYRAG	7 cut(s)	205, 756, 854, 1220, 3301, 4856, 5129
SpeI	ACTAGT	1 cut(s)	3808
SphI	GCATGC	1 cut(s)	1421
SseBI	AGGCCT	3 cut(s)	68, 143, 1496
SsiI	CCGC	6 cut(s)	376, 1869, 2075, 3039, 3524, 4844
SspI	AATATT	4 cut(s)	1719, 1834, 2718, 3032
StuI	AGGCCT	3 cut(s)	68, 143, 1496
StyI	CCWWGG	1 cut(s)	1788
TaiI	ACGT	9 cut(s)	926, 1061, 1436, 2191, 2546, 2930, 2947, 4365, 4525
TaqI	TCGA	9 cut(s)	137, 658, 1980, 4012, 4179, 4485, 4724, 4743, 5013
TatI	WGTACW	7 cut(s)	1549, 1559, 1709, 3077, 3395, 4248, 5108
TauI	GCSGC	1 cut(s)	1872
Tru1I	TTAA	7 cut(s)	1304, 1583, 1589, 2372, 2472, 3996, 4758
Tru9I	TTAA	7 cut(s)	1304, 1583, 1589, 2372, 2472, 3996, 4758
TseI	GCWGC	3 cut(s)	1166, 1274, 1421
TspGWI	ACGGA	4 cut(s)	61, 547, 3113, 4950
TspMI	CCCGGG	1 cut(s)	4610
Van91I	CCANNNNNTGG	2 cut(s)	1778, 3265
VpaK11BI	GGWCC	8 cut(s)	149, 475, 826, 1295, 3203, 3230, 3245, 4442
VspI	ATTAAT	2 cut(s)	1583, 3996
XagI	CCTNNNNNAGG	1 cut(s)	1487
XbaI	TCTAGA	1 cut(s)	3409
XceI	RCATGY	3 cut(s)	1421, 3133, 3258
XmaI	CCCGGG	1 cut(s)	4610
XmiI	GTMKAC	6 cut(s)	514, 1662, 2003, 2243, 5013, 5031
XmnI	GAANNNNTTC	3 cut(s)	1621, 2946, 3579
ZraI	GACGTC	1 cut(s)	4363
ZrmI	AGTACT	3 cut(s)	1561, 3079, 3397
Zsp2I	ATGCAT	1 cut(s)	1385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.