Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Forward (+)

7823208 .. 7825889

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGACCTCCTCCTACTCTGCTCCGCTCTCTCCTCTCTCCAAACCTCTACACACTTTCTCTTCCCTCCAAATCCAACAACCACCCACAACTCCCAAAACTACCCCTCCAAAACCCATCACCATAACCACCACCACCTCCACACCCAAACCCATCTCCGATTCCCGCACATGGATCGACACCATCCGCACCCAAACCCGGTCCGGTCACTACAACGAAGCCATATCAACCTACATCAATATGACCCGGTCCGGTATCCGCCCCGACAACTTTGCCTTCCCGGCGGTCCTGAAGGCCGTGGCGGCCCTTCATGACTTGAGATTGGGGCAGCAGGTTCATGCGTGCGTTGTGAAATTCGGATACGAGTCTGGTTCTGTGACCGTAGCCAACTCTCTTGTTAATGTGTATGGGAAATGCGGCGATATTGGGGATGCATACAAGGTGTTTGATGGAATGACTGAGAGGGATCAGGTTTCGTGGAATTCGATGATTGCGGCTTTGTGTAGGTTCGAGGAGTGGGAGCTGGCTTTGGAGGCGTTTAGGTCGATGTTTGAGGACAATGTGGTGCCGAGCTCGTTTACTTTAGTTAGTGCAGCGCTTGCTTGTTCGAATTTGGATAAGCGTGATGGGTTGAGGCTTGGGAAGCAGGTTCATGGGTATAGTGTGAGGATGTGTGAGTCGAAAACGTTTACAGTGAATGCTTTGATGTCTATGTATGCTAAGTTGGGGATGGTGGGGTATTCGAGAGGTGTGTTTGAGTTGTTTGAGGAGTGTGACTTGGTTTCGTGGAACACCATGGTAAGCTCATTGTCTCAGAATGACAGGTTTATGGAGGCGTTAGAGTTCTTCAGGTTGATGATTCTTGAGGGGATTAGACCTGATGGGGTGACGATTGCGAGTGTTCTTCCTGCCTGTTCTCATTTGGAGATGTTGGAGGCAGGGAAGGAGATTCATGCTTATGCGTTGAGAGCCAATGAATTGACTGGGAATTCTTATGTTGGCAGTGCTTTGGTTGACATGTATTGCAACTGCCGGGAAGTGGAAAGTGGTCGTCGAGTTTTTGATGCTGTAATGGAGTGGAAAGTTCCGCTTTGGAATGCAATGATTACCGGTTATGCACAAAACGAGTATGATGAGGAGGCCTTGGACCTGTTCCTTGAAATGTATGCTGTTTCGGGGCTTAATCCAAATGCCACCACTATGTCCAGCATTGTGCCAGCATGTGTGCGGTGTGAAGCATTCTCGGGGAAGGAAAGTATCCATGCTTTTGTAATAAAGCGGAGTCTGGAGAAGAACAGGTACATACAAAATGCACTTATGGACATGTACTCGAGAATGGGGAGAACAGGAATTTCAGAAACTATATTTAACAGCATGGAAGGAAAAGACATTGTGTCATGGAACACCATGATCACTGGTTATGTTATTTCTGGACGCCATGATGATGCCCTTAATCTGCTATATGAAATGCAAAGAGTAGAAGAAAACAAGAACACTGATAGTACTGGTTATGATGATGAAAGAAGGGTTCCTCTTAAGCCAAATACTATAACACTCATGACTCTTCTTCCTAGTTGTGCTGTATTATCAGCACTCGCTAAAGGGAAAGAGATCCATGCTTATGCTACTAGACACTTGTTGGCACTAGATATTGCTGTAGGTAGTGCACTGGTTGACATGTATGCTAAATGTGGCTGCTTAGATTTATCTAGGGCCATGTTTAATCAGATGCCGCTAAAGAATGTGATCACATGGAATGTGCTCATCATGGCTTATGGTATGCATGGGAGAGGGGAAGAAGCCTTAGAACTCTTTAAGAATATGGTGGATGAAGGCAGATGGAATAAAGAGCTAAGGCCTAATGAAGTTACATTCATTGCAATTTTTGCAGCTTGTAGTCACTCTGGGATGGTAGAGGAAGGTCTGAACTTGTTCCACACAATGAAACAAGAACACGGGATTGAACCTGCACCAGACCATTATGCTTGTGTTGTGGATTTGCTTGGTCGGGCTGGTAGTGTGGAGCGAGCATATGAAATAGTCAAAACTATGCCTTCTAAGTTTGATAAAGCAGGTGCCTGGAGTAGCTTGCTTGGCGCTTGTCGACTTCACCAAAATGTAGAGATTGGAGAGATTGCAGCTCATCATCTCCTGCAGCTGGAGCCTGATGTGGCTAGTCACTATGTTCTACTCTCGAATATCTACTCATCTTCTGGACTTTGGGAGAAGGCCATGGATATCAGGAGAAAAATGAAGGAGATGGGAGTGAGAAAAGAGCCTGGTTGTAGTTGGATTGAGTTTGAAGATGAAGTTCATAAGTTTTTAGCTGGGGATATGTCGCACCCGCAAAGTGAGCAGCTCCATGAATATCTTGAAACCCTGTCAGAAAGGATGAAAAAGGAAGGTTATGTGCCTGATACCTCTTGTGTGCTACACAATGTTGATGAGGACGAGAAAGAAACTTTACTTTGTGGGCACAGCGAGAAACTGGCAATGGCATTCGGCCTCCTCAATACCCGTCCAGGGACTACCATTAGAGTTGCCAAGAACCTTAGAGTCTGTAATGACTGCCACCTTGCAGCAAAATATATCTCAAAGATGTTGGACAGGGAGATCATTTTAAGAGATGTAAGAAGGTTCCATCATTTTAGAAATGGAAATTGTTCATGCGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

894

Amino Acids

100.16

Weight (kDa)

5.86

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	155 - 193	3.7e-07	PPR repeat family
PPR_2	PF13041	258 - 305	7.5e-07	PPR repeat family
PPR	PF01535	260 - 290	3.2e-06	PPR repeat
PPR_2	PF13041	363 - 408	3.7e-06	PPR repeat family
PPR_2	PF13041	461 - 491	3.2e-06	PPR repeat family
PPR	PF01535	464 - 491	8.7e-07	PPR repeat
PPR_2	PF13041	579 - 611	7.2e-07	PPR repeat family
PPR	PF01535	582 - 611	2e-08	PPR repeat
E_motif	PF20431	703 - 765	7.2e-21	E motif
Eplus_motif	PF20430	770 - 797	1.9e-08	E+ motif
DYW_deaminase	PF14432	801 - 893	7.3e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2060
Acc36I	ACCTGC	4 cut(s)	319, 634, 1972, 2060
AccB1I	GGYRCC	2 cut(s)	562, 2072
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	2101
AclI	AACGTT	1 cut(s)	683
AclWI	GGATC	3 cut(s)	179, 471, 1603
AcsI	RAATTY	5 cut(s)	350, 478, 607, 985, 1347
AcuI	CTGAAG	2 cut(s)	308, 829
AcyI	GRCGYC	1 cut(s)	1432
AfaI	GTAC	3 cut(s)	1298, 1325, 1501
AfeI	AGCGCT	1 cut(s)	594
AfiI	CCNNNNNNNGG	5 cut(s)	168, 195, 1036, 2155, 2520
AflII	CTTAAG	1 cut(s)	1532
AflIII	ACRYGT	3 cut(s)	1014, 1320, 1674
AgeI	ACCGGT	1 cut(s)	1106
AgsI	TTSAA	4 cut(s)	1157, 1961, 2300, 2372
AhdI	GACNNNNNGTC	1 cut(s)	1390
AjnI	CCWGG	3 cut(s)	2075, 2275, 2518
Alw21I	GWGCWC	3 cut(s)	572, 1666, 1761
Alw26I	GTCTC	1 cut(s)	813
Alw44I	GTGCAC	1 cut(s)	1662
AlwI	GGATC	3 cut(s)	179, 471, 1603
Ama87I	CYCGRG	2 cut(s)	1240, 1327
Aor51HI	AGCGCT	1 cut(s)	594
AoxI	GGCC	7 cut(s)	291, 300, 1137, 1710, 1853, 2226, 2500
ApaLI	GTGCAC	1 cut(s)	1662
ApeKI	GCWGC	8 cut(s)	325, 590, 1692, 1886, 2135, 2152, 2353, 2576
ApoI	RAATTY	5 cut(s)	350, 478, 607, 985, 1347
AsiGI	ACCGGT	1 cut(s)	1106
Asp700I	GAANNNNTTC	2 cut(s)	1928, 2659
AspLEI	GCGC	2 cut(s)	595, 2096
AspS9I	GGNCC	6 cut(s)	198, 246, 283, 301, 1144, 1710
AsuC2I	CCSGG	4 cut(s)	196, 244, 278, 1031
AsuHPI	GGTGA	3 cut(s)	109, 895, 2099
AsuII	TTCGAA	1 cut(s)	605
AvaI	CYCGRG	2 cut(s)	1240, 1327
AvaII	GGWCC	4 cut(s)	198, 246, 283, 1144
BaeGI	GKGCMC	2 cut(s)	1666, 2475
BanI	GGYRCC	2 cut(s)	562, 2072
BanII	GRGCYC	1 cut(s)	572
BarI	GAAGNNNNNNTAC	2 cut(s)	1280, 1312
Bbv12I	GWGCWC	3 cut(s)	572, 1666, 1761
BbvI	GCAGC	8 cut(s)	337, 602, 1679, 1898, 2147, 2164, 2365, 2588
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 251, 285
BciT130I	CCWGG	3 cut(s)	2077, 2277, 2520
BciVI	GTATCC	3 cut(s)	263, 350, 1265
BclI	TGATCA	2 cut(s)	1407, 1743
BcnI	CCSGG	4 cut(s)	196, 244, 278, 1031
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	5 cut(s)	1569, 1626, 1643, 1707, 2172
BfmI	CTRYAG	2 cut(s)	1653, 2150
BfoI	RGCGCY	2 cut(s)	596, 2097
BfrI	CTTAAG	1 cut(s)	1532
BfuAI	ACCTGC	4 cut(s)	319, 634, 1972, 2060
BfuI	GTATCC	3 cut(s)	263, 350, 1265
BglI	GCCNNNNNGGC	2 cut(s)	278, 299
BmcAI	AGTACT	1 cut(s)	1501
Bme1390I	CCNGG	7 cut(s)	196, 244, 278, 1031, 2077, 2277, 2520
Bme18I	GGWCC	4 cut(s)	198, 246, 283, 1144
BmeRI	GACNNNNNGTC	1 cut(s)	1390
BmeT110I	CYCGRG	2 cut(s)	1240, 1327
BmgT120I	GGNCC	6 cut(s)	198, 246, 283, 301, 1144, 1710
BmiI	GGNNCC	5 cut(s)	564, 1527, 2074, 2160, 2636
BmrFI	CCNGG	7 cut(s)	196, 244, 278, 1031, 2077, 2277, 2520
BmrI	ACTGGG	1 cut(s)	990
BmsI	GCATC	4 cut(s)	418, 1051, 1432, 1716
BmuI	ACTGGG	1 cut(s)	990
BpmI	CTGGAG	3 cut(s)	1304, 2098, 2177
Bpu10I	CCTNAGC	1 cut(s)	1850
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	334, 881
BpuMI	CCSGG	4 cut(s)	196, 244, 278, 1031
BsaHI	GRCGYC	1 cut(s)	1432
BsaJI	CCNNGG	5 cut(s)	294, 792, 1140, 2229, 2519
BsaWI	WCCGGW	3 cut(s)	200, 248, 1106
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 195, 1036, 2155, 2520
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	5 cut(s)	985, 1417, 1507, 1671, 2490
Bse3DI	GCAATG	3 cut(s)	1104, 1872, 2496
BseBI	CCWGG	3 cut(s)	2077, 2277, 2520
BseDI	CCNNGG	5 cut(s)	294, 792, 1140, 2229, 2519
BseGI	GGATG	7 cut(s)	180, 433, 672, 732, 1831, 1911, 2394
BseLI	CCNNNNNNNGG	5 cut(s)	168, 195, 1036, 2155, 2520
BseMI	GCAATG	3 cut(s)	1104, 1872, 2496
BseMII	CTCAG	2 cut(s)	447, 824
BseNI	ACTGG	5 cut(s)	985, 1417, 1507, 1671, 2490
BseRI	GAGGAG	5 cut(s)	21, 524, 779, 1148, 2495
BseSI	GKGCMC	2 cut(s)	1666, 2475
BseXI	GCAGC	8 cut(s)	337, 602, 1679, 1898, 2147, 2164, 2365, 2588
BseYI	CCCAGC	1 cut(s)	2324
BsgI	GTGCAG	2 cut(s)	609, 1950
BshFI	GGCC	7 cut(s)	293, 302, 1139, 1712, 1855, 2228, 2502
BshNI	GGYRCC	2 cut(s)	562, 2072
BshTI	ACCGGT	1 cut(s)	1106
BsiHKAI	GWGCWC	3 cut(s)	572, 1666, 1761
BsiHKCI	CYCGRG	2 cut(s)	1240, 1327
BsiSI	CCGG	7 cut(s)	196, 201, 244, 249, 278, 1030, 1107
BslFI	GGGAC	1 cut(s)	2536
BslI	CCNNNNNNNGG	5 cut(s)	168, 195, 1036, 2155, 2520
BsmAI	GTCTC	1 cut(s)	813
BsmFI	GGGAC	1 cut(s)	2536
BsmI	GAATGC	4 cut(s)	700, 1099, 1235, 2495
BsnI	GGCC	7 cut(s)	293, 302, 1139, 1712, 1855, 2228, 2502
BsoBI	CYCGRG	2 cut(s)	1240, 1327
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	4 cut(s)	572, 1666, 1761, 2475
Bsp143I	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
Bsp19I	CCATGG	2 cut(s)	792, 2229
BspANI	GGCC	7 cut(s)	293, 302, 1139, 1712, 1855, 2228, 2502
BspCNI	CTCAG	2 cut(s)	448, 823
BspHI	TCATGA	2 cut(s)	307, 1554
BspLI	GGNNCC	5 cut(s)	564, 1527, 2074, 2160, 2636
BspMAI	CTGCAG	1 cut(s)	2154
BspMI	ACCTGC	4 cut(s)	319, 634, 1972, 2060
BspPI	GGATC	3 cut(s)	179, 471, 1603
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	2 cut(s)	562, 2072
BspTI	CTTAAG	1 cut(s)	1532
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	3 cut(s)	1104, 1872, 2496
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	5 cut(s)	985, 1417, 1507, 1671, 2490
BssAI	RCCGGY	1 cut(s)	1106
BssECI	CCNNGG	5 cut(s)	294, 792, 1140, 2229, 2519
BssMI	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
BssNI	GRCGYC	1 cut(s)	1432
BssT1I	CCWWGG	3 cut(s)	792, 1140, 2229
Bst2UI	CCWGG	3 cut(s)	2077, 2277, 2520
Bst4CI	ACNGT	2 cut(s)	379, 691
Bst6I	CTCTTC	2 cut(s)	64, 1566
BstACI	GRCGYC	1 cut(s)	1432
BstAFI	CTTAAG	1 cut(s)	1532
BstAPI	GCANNNNNTGC	2 cut(s)	596, 1883
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	6 cut(s)	340, 522, 597, 1215, 2025, 2087
BstDEI	CTNAG	8 cut(s)	456, 717, 810, 1696, 1801, 1850, 2055, 2549
BstDSI	CCRYGG	3 cut(s)	294, 792, 2229
BstF5I	GGATG	7 cut(s)	180, 433, 672, 732, 1831, 1911, 2394
BstH2I	RGCGCY	2 cut(s)	596, 2097
BstHHI	GCGC	2 cut(s)	595, 2096
BstKTI	GATC	6 cut(s)	174, 466, 1410, 1611, 1746, 2613
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
BstNI	CCWGG	3 cut(s)	2077, 2277, 2520
BstNSI	RCATGY	4 cut(s)	1018, 1221, 1324, 1678
BstSCI	CCNGG	7 cut(s)	194, 242, 276, 1029, 2075, 2275, 2518
BstSFI	CTRYAG	2 cut(s)	1653, 2150
BstSLI	GKGCMC	2 cut(s)	1666, 2475
BstV1I	GCAGC	8 cut(s)	337, 602, 1679, 1898, 2147, 2164, 2365, 2588
BstX2I	RGATCY	1 cut(s)	1608
BstYI	RGATCY	1 cut(s)	1608
BsuI	GTATCC	3 cut(s)	263, 350, 1265
BsuRI	GGCC	7 cut(s)	293, 302, 1139, 1712, 1855, 2228, 2502
BtgI	CCRYGG	3 cut(s)	294, 792, 2229
BtsCI	GGATG	7 cut(s)	180, 433, 672, 732, 1831, 1911, 2394
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	5 cut(s)	696, 1006, 1410, 1491, 1664
BveI	ACCTGC	4 cut(s)	319, 634, 1972, 2060
Cac8I	GCNNGC	6 cut(s)	340, 522, 597, 1215, 2025, 2087
CciI	TCATGA	2 cut(s)	307, 1554
CfoI	GCGC	2 cut(s)	595, 2096
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr13I	GGNCC	6 cut(s)	198, 246, 283, 301, 1144, 1710
CpoI	CGGWCCG	2 cut(s)	198, 246
CseI	GACGC	1 cut(s)	1440
Csp6I	GTAC	3 cut(s)	1297, 1324, 1500
CspAI	ACCGGT	1 cut(s)	1106
CspI	CGGWCCG	2 cut(s)	198, 246
CviQI	GTAC	3 cut(s)	1297, 1324, 1500
DdeI	CTNAG	8 cut(s)	456, 717, 810, 1696, 1801, 1850, 2055, 2549
DpnI	GATC	6 cut(s)	173, 465, 1409, 1610, 1745, 2612
DpnII	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
DriI	GACNNNNNGTC	1 cut(s)	1390
Eam1104I	CTCTTC	2 cut(s)	64, 1566
Eam1105I	GACNNNNNGTC	1 cut(s)	1390
EarI	CTCTTC	2 cut(s)	64, 1566
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	570
Eco130I	CCWWGG	3 cut(s)	792, 1140, 2229
Eco147I	AGGCCT	2 cut(s)	1139, 1855
Eco24I	GRGCYC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	2236
Eco47I	GGWCC	4 cut(s)	198, 246, 283, 1144
Eco47III	AGCGCT	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	570
Eco57I	CTGAAG	2 cut(s)	308, 829
Eco88I	CYCGRG	2 cut(s)	1240, 1327
EcoICRI	GAGCTC	1 cut(s)	570
EcoRI	GAATTC	2 cut(s)	478, 985
EcoRII	CCWGG	3 cut(s)	2075, 2275, 2518
EcoRV	GATATC	1 cut(s)	2236
EcoT14I	CCWWGG	3 cut(s)	792, 1140, 2229
EcoT22I	ATGCAT	2 cut(s)	433, 1782
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	3 cut(s)	792, 1140, 2229
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	1 cut(s)	2536
FauI	CCCGC	2 cut(s)	170, 2349
FauNDI	CATATG	1 cut(s)	2029
FbaI	TGATCA	2 cut(s)	1407, 1743
FblI	GTMKAC	1 cut(s)	2101
FokI	GGATG	7 cut(s)	167, 440, 679, 739, 1838, 1918, 2401
FriOI	GRGCYC	1 cut(s)	572
FspBI	CTAG	5 cut(s)	1569, 1626, 1643, 1707, 2172
GlaI	GCGC	2 cut(s)	594, 2095
GsaI	CCCAGC	1 cut(s)	2328
GsuI	CTGGAG	3 cut(s)	1304, 2098, 2177
HaeII	RGCGCY	2 cut(s)	596, 2097
HaeIII	GGCC	7 cut(s)	293, 302, 1139, 1712, 1855, 2228, 2502
HapII	CCGG	7 cut(s)	196, 201, 244, 249, 278, 1030, 1107
HgaI	GACGC	1 cut(s)	1440
HhaI	GCGC	2 cut(s)	595, 2096
Hin1I	GRCGYC	1 cut(s)	1432
Hin6I	GCGC	2 cut(s)	593, 2094
HinP1I	GCGC	2 cut(s)	593, 2094
HincII	GTYRAC	3 cut(s)	1012, 1672, 2102
HindII	GTYRAC	3 cut(s)	1012, 1672, 2102
HinfI	GANTC	8 cut(s)	158, 362, 674, 856, 946, 1279, 1558, 2553
HpaII	CCGG	7 cut(s)	196, 201, 244, 249, 278, 1030, 1107
HphI	GGTGA	3 cut(s)	109, 895, 2099
Hpy166II	GTNNAC	6 cut(s)	576, 687, 1012, 1664, 1672, 2102
Hpy188I	TCNGA	7 cut(s)	157, 356, 813, 1354, 1725, 1923, 2383
Hpy8I	GTNNAC	6 cut(s)	576, 687, 1012, 1664, 1672, 2102
Hpy99I	CGWCG	1 cut(s)	1053
HpyCH4III	ACNGT	2 cut(s)	379, 691
HpyCH4IV	ACGT	1 cut(s)	683
HpyF3I	CTNAG	8 cut(s)	456, 717, 810, 1696, 1801, 1850, 2055, 2549
HpySE526I	ACGT	1 cut(s)	683
Hsp92I	GRCGYC	1 cut(s)	1432
HspAI	GCGC	2 cut(s)	593, 2094
Ksp22I	TGATCA	2 cut(s)	1407, 1743
Kzo9I	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
LmnI	GCTCC	5 cut(s)	25, 517, 2020, 2158, 2361
Lsp1109I	GCAGC	8 cut(s)	337, 602, 1679, 1898, 2147, 2164, 2365, 2588
LweI	GCATC	4 cut(s)	418, 1051, 1432, 1716
MaeI	CTAG	5 cut(s)	1569, 1626, 1643, 1707, 2172
MaeII	ACGT	1 cut(s)	683
MaeIII	GTNAC	7 cut(s)	203, 373, 770, 883, 1864, 1895, 2174
MalI	GATC	6 cut(s)	173, 465, 1409, 1610, 1745, 2612
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
MflI	RGATCY	1 cut(s)	1608
MhlI	GDGCHC	4 cut(s)	572, 1666, 1761, 2475
MluCI	AATT	8 cut(s)	350, 478, 607, 974, 985, 1347, 1878, 2656
MlyI	GAGTC	5 cut(s)	371, 683, 1288, 1552, 2562
MmeI	TCCRAC	4 cut(s)	97, 909, 2267, 2580
Mph1103I	ATGCAT	2 cut(s)	433, 1782
MroXI	GAANNNNTTC	2 cut(s)	1928, 2659
MseI	TTAA	8 cut(s)	396, 1179, 1365, 1449, 1533, 1719, 1812, 2618
MslI	CAYNNNNRTG	6 cut(s)	236, 954, 1196, 1440, 1617, 2112
MspA1I	CMGCKG	1 cut(s)	2155
MspCI	CTTAAG	1 cut(s)	1532
MspI	CCGG	7 cut(s)	196, 201, 244, 249, 278, 1030, 1107
MspR9I	CCNGG	7 cut(s)	196, 244, 278, 1031, 2077, 2277, 2520
Mva1269I	GAATGC	4 cut(s)	700, 1099, 1235, 2495
MvaI	CCWGG	3 cut(s)	2077, 2277, 2520
NciI	CCSGG	4 cut(s)	196, 244, 278, 1031
NcoI	CCATGG	2 cut(s)	792, 2229
NdeI	CATATG	1 cut(s)	2029
NdeII	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
NlaIV	GGNNCC	5 cut(s)	564, 1527, 2074, 2160, 2636
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	6 cut(s)	203, 373, 770, 883, 1895, 2174
NsiI	ATGCAT	2 cut(s)	433, 1782
NspI	RCATGY	4 cut(s)	1018, 1221, 1324, 1678
NspV	TTCGAA	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	1327
PagI	TCATGA	2 cut(s)	307, 1554
PaqCI	CACCTGC	1 cut(s)	2060
PceI	AGGCCT	2 cut(s)	1139, 1855
PciI	ACATGT	3 cut(s)	1014, 1320, 1674
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PctI	GAATGC	4 cut(s)	700, 1099, 1235, 2495
PdmI	GAANNNNTTC	2 cut(s)	1928, 2659
PfeI	GAWTC	3 cut(s)	158, 856, 946
PflFI	GACNNNGTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	1106
PleI	GAGTC	5 cut(s)	370, 682, 1287, 1552, 2561
PpsI	GAGTC	5 cut(s)	370, 682, 1287, 1552, 2561
PscI	ACATGT	3 cut(s)	1014, 1320, 1674
Psp124BI	GAGCTC	1 cut(s)	572
Psp1406I	AACGTT	1 cut(s)	683
Psp6I	CCWGG	3 cut(s)	2075, 2275, 2518
PspFI	CCCAGC	1 cut(s)	2324
PspGI	CCWGG	3 cut(s)	2075, 2275, 2518
PspN4I	GGNNCC	5 cut(s)	564, 1527, 2074, 2160, 2636
PspPI	GGNCC	6 cut(s)	198, 246, 283, 301, 1144, 1710
PstI	CTGCAG	1 cut(s)	2154
PsuI	RGATCY	1 cut(s)	1608
PsyI	GACNNNGTC	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	2155
RsaI	GTAC	3 cut(s)	1298, 1325, 1501
RsaNI	GTAC	3 cut(s)	1297, 1324, 1500
RseI	CAYNNNNRTG	6 cut(s)	236, 954, 1196, 1440, 1617, 2112
Rsr2I	CGGWCCG	2 cut(s)	198, 246
RsrII	CGGWCCG	2 cut(s)	198, 246
SacI	GAGCTC	1 cut(s)	572
SalI	GTCGAC	1 cut(s)	2100
SaqAI	TTAA	8 cut(s)	396, 1179, 1365, 1449, 1533, 1719, 1812, 2618
Sau3AI	GATC	6 cut(s)	171, 463, 1407, 1608, 1743, 2610
Sau96I	GGNCC	6 cut(s)	198, 246, 283, 301, 1144, 1710
ScaI	AGTACT	1 cut(s)	1501
SchI	GAGTC	5 cut(s)	371, 683, 1288, 1552, 2562
ScrFI	CCNGG	7 cut(s)	196, 244, 278, 1031, 2077, 2277, 2520
SduI	GDGCHC	4 cut(s)	572, 1666, 1761, 2475
SfaNI	GCATC	4 cut(s)	418, 1051, 1432, 1716
SfcI	CTRYAG	2 cut(s)	1653, 2150
SfiI	GGCCNNNNNGGCC	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	1327
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	4 cut(s)	198, 246, 283, 1144
SlaI	CTCGAG	1 cut(s)	1327
SmiMI	CAYNNNNRTG	6 cut(s)	236, 954, 1196, 1440, 1617, 2112
SmlI	CTYRAG	4 cut(s)	313, 860, 1327, 1532
SmoI	CTYRAG	4 cut(s)	313, 860, 1327, 1532
Sse9I	AATT	8 cut(s)	350, 478, 607, 974, 985, 1347, 1878, 2656
SseBI	AGGCCT	2 cut(s)	1139, 1855
SspMI	CTAG	5 cut(s)	1569, 1626, 1643, 1707, 2172
SstI	GAGCTC	1 cut(s)	572
StuI	AGGCCT	2 cut(s)	1139, 1855
StyD4I	CCNGG	7 cut(s)	194, 242, 276, 1029, 2075, 2275, 2518
StyI	CCWWGG	3 cut(s)	792, 1140, 2229
TaaI	ACNGT	2 cut(s)	379, 691
TaiI	ACGT	1 cut(s)	686
TasI	AATT	8 cut(s)	350, 478, 607, 974, 985, 1347, 1878, 2656
TatI	WGTACW	2 cut(s)	1323, 1499
TauI	GCSGC	4 cut(s)	302, 417, 494, 1732
TfiI	GAWTC	3 cut(s)	158, 856, 946
Tru1I	TTAA	8 cut(s)	396, 1179, 1365, 1449, 1533, 1719, 1812, 2618
Tru9I	TTAA	8 cut(s)	396, 1179, 1365, 1449, 1533, 1719, 1812, 2618
TscAI	CASTG	5 cut(s)	696, 1006, 1417, 1498, 1671
TseFI	GTSAC	6 cut(s)	203, 373, 770, 883, 1895, 2174
TseI	GCWGC	8 cut(s)	325, 590, 1692, 1886, 2135, 2152, 2353, 2576
Tsp45I	GTSAC	6 cut(s)	203, 373, 770, 883, 1895, 2174
TspRI	CASTG	5 cut(s)	696, 1006, 1417, 1498, 1671
Tth111I	GACNNNGTC	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	1532
VneI	GTGCAC	1 cut(s)	1662
VpaK11BI	GGWCC	4 cut(s)	198, 246, 283, 1144
XapI	RAATTY	5 cut(s)	350, 478, 607, 985, 1347
XceI	RCATGY	4 cut(s)	1018, 1221, 1324, 1678
XhoI	CTCGAG	1 cut(s)	1327
XmiI	GTMKAC	1 cut(s)	2101
XmnI	GAANNNNTTC	2 cut(s)	1928, 2659
XspI	CTAG	5 cut(s)	1569, 1626, 1643, 1707, 2172
ZrmI	AGTACT	1 cut(s)	1501
Zsp2I	ATGCAT	2 cut(s)	433, 1782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.