Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57430 |
| fragaria_vesca | FvH4_3g13090 |
| malus_domestica | MD10G1226400.v1.1 |
| prunus_persica | Prupe.1G101200_v2.0.a1 |
| pyrus_communis | pycom10g19030 |
| rosa_chinensis | RchiOBHm_Chr5g0021321 |
| rosa_laevigata | RLG00000032604 |
| rosa_multiflora | Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016 |
| rosa_rugosa | Rorug05G0066300 |
| rosa_samantha | Rh5BG154900 Rh5CG168400 |
| rosa_wichuraiana | Rw5G013850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 283, 332, 345 |
| AcsI | RAATTY | 1 cut(s) | 135 |
| AfaI | GTAC | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 154, 232 |
| AgsI | TTSAA | 1 cut(s) | 241 |
| AjnI | CCWGG | 1 cut(s) | 263 |
| AluBI | AGCT | 1 cut(s) | 329 |
| AluI | AGCT | 1 cut(s) | 329 |
| Alw26I | GTCTC | 3 cut(s) | 24, 251, 346 |
| AlwI | GGATC | 3 cut(s) | 283, 332, 345 |
| AoxI | GGCC | 1 cut(s) | 248 |
| ApaI | GGGCCC | 1 cut(s) | 252 |
| ApoI | RAATTY | 1 cut(s) | 135 |
| AspLEI | GCGC | 1 cut(s) | 394 |
| AspS9I | GGNCC | 3 cut(s) | 248, 249, 270 |
| AvaII | GGWCC | 1 cut(s) | 270 |
| BaeGI | GKGCMC | 2 cut(s) | 252, 281 |
| BamHI | GGATCC | 1 cut(s) | 337 |
| BanII | GRGCYC | 1 cut(s) | 252 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 341, 373 |
| BbsI | GAAGAC | 2 cut(s) | 42, 229 |
| BciT130I | CCWGG | 1 cut(s) | 265 |
| BcoDI | GTCTC | 3 cut(s) | 24, 251, 346 |
| Bme1390I | CCNGG | 1 cut(s) | 265 |
| Bme18I | GGWCC | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 3 cut(s) | 248, 249, 270 |
| BmiI | GGNNCC | 4 cut(s) | 250, 251, 339, 461 |
| BmrFI | CCNGG | 1 cut(s) | 265 |
| BmrI | ACTGGG | 2 cut(s) | 109, 163 |
| BmsI | GCATC | 1 cut(s) | 222 |
| BmuI | ACTGGG | 2 cut(s) | 109, 163 |
| BpiI | GAAGAC | 2 cut(s) | 42, 229 |
| BpmI | CTGGAG | 1 cut(s) | 286 |
| BsaBI | GATNNNNATC | 1 cut(s) | 402 |
| BsaJI | CCNNGG | 1 cut(s) | 407 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 90, 120 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 154, 232 |
| Bse1I | ACTGG | 3 cut(s) | 115, 158, 167 |
| Bse8I | GATNNNNATC | 1 cut(s) | 402 |
| BseBI | CCWGG | 1 cut(s) | 265 |
| BseDI | CCNNGG | 1 cut(s) | 407 |
| BseGI | GGATG | 2 cut(s) | 75, 403 |
| BseJI | GATNNNNATC | 1 cut(s) | 402 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 154, 232 |
| BseMII | CTCAG | 3 cut(s) | 246, 344, 365 |
| BseNI | ACTGG | 3 cut(s) | 115, 158, 167 |
| BseSI | GKGCMC | 2 cut(s) | 252, 281 |
| BshFI | GGCC | 1 cut(s) | 250 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 154, 232 |
| BsmAI | GTCTC | 3 cut(s) | 24, 251, 346 |
| BsmBI | CGTCTC | 1 cut(s) | 24 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsnI | GGCC | 1 cut(s) | 250 |
| Bsp120I | GGGCCC | 1 cut(s) | 248 |
| Bsp1286I | GDGCHC | 2 cut(s) | 252, 281 |
| Bsp143I | GATC | 2 cut(s) | 288, 337 |
| BspANI | GGCC | 1 cut(s) | 250 |
| BspCNI | CTCAG | 3 cut(s) | 247, 343, 366 |
| BspLI | GGNNCC | 4 cut(s) | 250, 251, 339, 461 |
| BspPI | GGATC | 3 cut(s) | 283, 332, 345 |
| BsrI | ACTGG | 3 cut(s) | 115, 158, 167 |
| BssECI | CCNNGG | 1 cut(s) | 407 |
| BssMI | GATC | 2 cut(s) | 288, 337 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 1 cut(s) | 265 |
| Bst6I | CTCTTC | 4 cut(s) | 227, 344, 362, 453 |
| BstDEI | CTNAG | 3 cut(s) | 255, 330, 374 |
| BstF5I | GGATG | 2 cut(s) | 75, 403 |
| BstHHI | GCGC | 1 cut(s) | 394 |
| BstKTI | GATC | 2 cut(s) | 291, 340 |
| BstMAI | GTCTC | 3 cut(s) | 24, 251, 346 |
| BstMBI | GATC | 2 cut(s) | 288, 337 |
| BstNI | CCWGG | 1 cut(s) | 265 |
| BstSCI | CCNGG | 1 cut(s) | 263 |
| BstSLI | GKGCMC | 2 cut(s) | 252, 281 |
| BstV2I | GAAGAC | 2 cut(s) | 42, 229 |
| BstX2I | RGATCY | 2 cut(s) | 288, 337 |
| BstYI | RGATCY | 2 cut(s) | 288, 337 |
| BsuRI | GGCC | 1 cut(s) | 250 |
| BtsCI | GGATG | 2 cut(s) | 75, 403 |
| BtsIMutI | CAGTG | 1 cut(s) | 338 |
| CfoI | GCGC | 1 cut(s) | 394 |
| Cfr13I | GGNCC | 3 cut(s) | 248, 249, 270 |
| Csp6I | GTAC | 1 cut(s) | 177 |
| CviAII | CATG | 2 cut(s) | 45, 141 |
| CviJI | RGCY | 4 cut(s) | 58, 250, 329, 373 |
| CviKI_1 | RGCY | 4 cut(s) | 58, 250, 329, 373 |
| CviQI | GTAC | 1 cut(s) | 177 |
| DdeI | CTNAG | 3 cut(s) | 255, 330, 374 |
| DpnI | GATC | 2 cut(s) | 290, 339 |
| DpnII | GATC | 2 cut(s) | 288, 337 |
| Eam1104I | CTCTTC | 4 cut(s) | 227, 344, 362, 453 |
| EarI | CTCTTC | 4 cut(s) | 227, 344, 362, 453 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 270 |
| EcoO109I | RGGNCCY | 1 cut(s) | 249 |
| EcoRII | CCWGG | 1 cut(s) | 263 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 1 cut(s) | 252 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| Esp3I | CGTCTC | 1 cut(s) | 24 |
| FaeI | CATG | 2 cut(s) | 48, 144 |
| FaiI | YATR | 5 cut(s) | 46, 142, 195, 434, 466 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FatI | CATG | 2 cut(s) | 44, 140 |
| FokI | GGATG | 2 cut(s) | 62, 410 |
| FriOI | GRGCYC | 1 cut(s) | 252 |
| GlaI | GCGC | 1 cut(s) | 393 |
| GsuI | CTGGAG | 1 cut(s) | 286 |
| HaeIII | GGCC | 1 cut(s) | 250 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 394 |
| Hin1II | CATG | 2 cut(s) | 48, 144 |
| Hin6I | GCGC | 1 cut(s) | 392 |
| HinP1I | GCGC | 1 cut(s) | 392 |
| HinfI | GANTC | 3 cut(s) | 304, 354, 412 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 1 cut(s) | 288 |
| Hpy188III | TCNNGA | 3 cut(s) | 341, 457, 470 |
| HpyAV | CCTTC | 1 cut(s) | 198 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 330, 374 |
| Hsp92II | CATG | 2 cut(s) | 48, 144 |
| HspAI | GCGC | 1 cut(s) | 392 |
| Kzo9I | GATC | 2 cut(s) | 288, 337 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 9 cut(s) | 128, 139, 180, 250, 267, 277, 354, 408, 442 |
| LweI | GCATC | 1 cut(s) | 222 |
| MalI | GATC | 2 cut(s) | 290, 339 |
| MboI | GATC | 2 cut(s) | 288, 337 |
| MboII | GAAGA | 9 cut(s) | 47, 112, 214, 229, 361, 379, 390, 440, 443 |
| MflI | RGATCY | 2 cut(s) | 288, 337 |
| MhlI | GDGCHC | 2 cut(s) | 252, 281 |
| MluCI | AATT | 3 cut(s) | 135, 423, 475 |
| MlyI | GAGTC | 1 cut(s) | 348 |
| MnlI | CCTC | 8 cut(s) | 89, 114, 182, 236, 261, 303, 316, 363 |
| MseI | TTAA | 2 cut(s) | 68, 402 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 265 |
| MvaI | CCWGG | 1 cut(s) | 265 |
| NdeII | GATC | 2 cut(s) | 288, 337 |
| NlaIII | CATG | 2 cut(s) | 48, 144 |
| NlaIV | GGNNCC | 4 cut(s) | 250, 251, 339, 461 |
| PfeI | GAWTC | 2 cut(s) | 304, 412 |
| PfoI | TCCNGGA | 1 cut(s) | 263 |
| PleI | GAGTC | 1 cut(s) | 348 |
| PpsI | GAGTC | 1 cut(s) | 348 |
| Psp6I | CCWGG | 1 cut(s) | 263 |
| PspGI | CCWGG | 1 cut(s) | 263 |
| PspN4I | GGNNCC | 4 cut(s) | 250, 251, 339, 461 |
| PspOMI | GGGCCC | 1 cut(s) | 248 |
| PspPI | GGNCC | 3 cut(s) | 248, 249, 270 |
| PsuI | RGATCY | 2 cut(s) | 288, 337 |
| RsaI | GTAC | 1 cut(s) | 178 |
| RsaNI | GTAC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 68, 402 |
| Sau3AI | GATC | 2 cut(s) | 288, 337 |
| Sau96I | GGNCC | 3 cut(s) | 248, 249, 270 |
| SchI | GAGTC | 1 cut(s) | 348 |
| ScrFI | CCNGG | 1 cut(s) | 265 |
| SduI | GDGCHC | 2 cut(s) | 252, 281 |
| SetI | ASST | 4 cut(s) | 106, 150, 272, 331 |
| SfaNI | GCATC | 1 cut(s) | 222 |
| SinI | GGWCC | 1 cut(s) | 270 |
| Sse9I | AATT | 3 cut(s) | 135, 423, 475 |
| StyD4I | CCNGG | 1 cut(s) | 263 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TasI | AATT | 3 cut(s) | 135, 423, 475 |
| TfiI | GAWTC | 2 cut(s) | 304, 412 |
| Tru1I | TTAA | 2 cut(s) | 68, 402 |
| Tru9I | TTAA | 2 cut(s) | 68, 402 |
| TscAI | CASTG | 1 cut(s) | 338 |
| TspDTI | ATGAA | 1 cut(s) | 112 |
| TspRI | CASTG | 1 cut(s) | 338 |
| VpaK11BI | GGWCC | 1 cut(s) | 270 |
| XapI | RAATTY | 1 cut(s) | 135 |