Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Forward (+)

15723162 .. 15725606

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGACCCGTTCCGGTATCGAACCCGACAACTTTGCCTTCCCGGCGGTCCTCAAGGCCGTCACGGCCCTTCAAGACTTGAACTTGGGGAAGCAGATACACGCCCATGTTGTCAAATTTGGATACGAGTCATCTTCTGTCACCGTGGCGAATACTCTTGTCAATGTGTATGGGAAGTGTGGCGATATTGGAGATGCGTATAAGGTGTTCGATGGAATGACTGAGAGGGATCAGGTTTCTTGGAATTCCATGATTGCTGCTTTGTGTAGGTTTGAGGAATGGGAGCTGGCTTTGGAGGCGTTTCGGTCGATGTTTTCGGATAATGTGGAGCCTAGCTCGTTTACTTTGGTGAGTGCTGCACTTGCTTGTTCGAATTTGGATAGGCGTGATGGCTTGAGGCTTGGGAAGCAAGTTCATGCGTATAGTATGAGAATGTGTGAGTCGAAAACGTTTACTGTCAATGCTTTGATGTCTATGTATGCTAAGTTGGGGATGGTGGGATACTCGAGAGGTGTGTTTGAGTTGTTTGAGGAGTGTGACTTGGTTTCGTGGAACACCATGATAAGTTCACTGTCTCAGAATGACAGGTTTGTGGAGGCATTAGAGTTCTTCCGGTTGATGATTCTCGAGGGAATTAGACCAGATGGGGTGACGGTTGCGAGTGTTCTTCCTGCATGTTCTCATTTGGAGATGTTGGAGGCAGGGAAGGAAATTCATGCTTATGCATTGAGAGCCAATGAGTTAACTGGGAATTCTTATGTGGGCAGTGCTTTAGTTGACATGTATTGCAACTGCCAGCAAGTTGAGAGTGGTCGTAGAGTTTTTGATGCTGTCACGGAGCGGAGAGTTCCACTTTGGAATGCAATGATTACTGGTTATGCACAAAATGAGTATGATGAGGAGGCCTTGGACCTGTTCCTTGAAATGTATGCTGTGTCAGGGCATAGTCCAAATGCCACCACAATGTCGAGTATTGTGCCAGCATGTGTGCGGTCTAAAGCATTCTTGGGGAAAGAAAGTATCCATGGTTTTGTAGTAAAGCAGAGTCTGGAGAAGAACAGGTATGTGCAAAATGCACTTATGGACATGTACTCGAGGATGGGGAGAACAGAAATTTCAGAAACTATATTTAACAGCATGGAAGGAAAAGACATTGTATCATGGAACACCATGATCACCGGTTATGTTATTTCCGGACGTCATGATGACGCACTTAATCTGCTATATGAAATTCAAAGAGTAGAAGAAAACAAGAACACCAATGGTACTGGGTATGATAATGAAAGAAGGGTTCCCCTTAAGCCAAATACTATAACACTCATGACTCTTCTTCCTAGTTGTGCTGTATTATCAGCACTCGCTAAAGGGAAAGAGATCCATGCTTATGCTAATAGACATTTGTTGGCACTAGATATTGCTGTAGGTAGTGCACTGGTTGACATGTATGCTAAATGTGGCTGCTTGGATTTATCTAGAGCCATGTTTAATCAGATGCCGTTAAAGAATGTGATCACCTGGAATGTGCTTATCATGGCTTATGGTATGCATGGAAGAGGAGAGGAAGCCTTAGAATTCTTTAGGAATATGGTGGATGAAGGAAGATGGAATAAAGAGATAAGGCCTAATGAAGTTACATTCATTGCAATTTTTGCAGCTTGTAGTCATTCTGGGATGGTAGATGAAGGTCTGAACTTGTTCCACACAATGAAACAAGACCACGGCATTGAACCTGCACCAGACCATTATGCTTGTGTTGTGGATTTGCTTGGTCGGGCTGGTAGTGTGGAGCGAGCATATGAAATCATCAAAACCATGCCTTCTAAGTTTGATAAAGCAGGTGCTTGGAGTAGCTTGCTTGGCGCTTGTCGACTTCACCAAAATGTAGAGATTGGAGAAATTGCAGCTAATCATCTCCTGCAGCTGGAGCCCGATGTGGCTAGCCACTATGTTCTACTCTCCAATATCTACTCATCTTCTGGACTTTGGGAAAAGGCCATGGATGTCCGTAGAAAAATGAAGGAAATGGGAGTAAGGAAAGAACCTGGTTGTAGTTGGATTGAGTTTGAAGATGAGGTTCATAAGTTTTTGGCTGGGGATCTGTCCCACCCACAAAGTGAGCAGCTCCATGAATATCTCGAAACCCTGTCAGAAAGGATGAAAAAGGAGGGTTATGTGCCTGATACTTCTTGTGTACTTCACAATGTTGATGAGGACGAGAAAGAAACTTTACTTTGCGGGCACAGCGAGAAACTGGCAATGGCTTTCGGCCTCCTCAATACCCGTCCAGGGACTACCATTAGAGTTGCCAAGAACCTTAGAGTCTGTAATGACTGCCACCTTGCAGCGAAATATATCTCAAAGATGCTGGACAGGGAGATCATTTTAAGAGATGTAAGAAGGTTCCATCATTTTAGAAATGGAAATTGTTCATGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

814

Amino Acids

91.44

Weight (kDa)

5.67

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 114	1.1e-07	PPR repeat family
PPR_2	PF13041	179 - 226	6.6e-08	PPR repeat family
PPR	PF01535	181 - 211	3.6e-07	PPR repeat
PPR_2	PF13041	284 - 329	3.1e-06	PPR repeat family
PPR_2	PF13041	500 - 532	2.6e-06	PPR repeat family
PPR	PF01535	503 - 532	1.1e-07	PPR repeat
E_motif	PF20431	624 - 686	2.1e-21	E motif
Eplus_motif	PF20430	691 - 718	7.3e-07	E+ motif
DYW_deaminase	PF14432	722 - 814	6.4e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1823
AatII	GACGTC	1 cut(s)	1198
Acc36I	ACCTGC	2 cut(s)	1735, 1823
AccBSI	CCGCTC	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	1864
AccIII	TCCGGA	1 cut(s)	1190
AciI	CCGC	4 cut(s)	44, 838, 988, 2232
AclI	AACGTT	1 cut(s)	446
AclWI	GGATC	3 cut(s)	234, 1366, 2100
AcsI	RAATTY	8 cut(s)	113, 241, 370, 708, 748, 1110, 1227, 1568
AcyI	GRCGYC	1 cut(s)	1195
AdeI	CACNNNGTG	1 cut(s)	2111
AfaI	GTAC	3 cut(s)	1088, 1264, 2190
AfiI	CCNNNNNNNGG	2 cut(s)	1918, 2283
AflII	CTTAAG	1 cut(s)	1295
AflIII	ACRYGT	3 cut(s)	777, 1083, 1437
AgeI	ACCGGT	1 cut(s)	1175
AgsI	TTSAA	6 cut(s)	71, 79, 920, 1232, 1724, 2063
AjnI	CCWGG	3 cut(s)	1511, 2038, 2281
AluBI	AGCT	7 cut(s)	283, 333, 1652, 1848, 1901, 1918, 2119
AluI	AGCT	7 cut(s)	283, 333, 1652, 1848, 1901, 1918, 2119
Alw21I	GWGCWC	1 cut(s)	1429
Alw26I	GTCTC	1 cut(s)	576
Alw44I	GTGCAC	1 cut(s)	1425
AlwI	GGATC	3 cut(s)	234, 1366, 2100
AlwNI	CAGNNNCTG	1 cut(s)	1045
Ama87I	CYCGRG	3 cut(s)	502, 623, 1090
Aor13HI	TCCGGA	1 cut(s)	1190
AoxI	GGCC	6 cut(s)	54, 63, 900, 1616, 1989, 2263
ApaLI	GTGCAC	1 cut(s)	1425
ApeKI	GCWGC	8 cut(s)	254, 353, 1455, 1649, 1898, 1915, 2116, 2339
ApoI	RAATTY	8 cut(s)	113, 241, 370, 708, 748, 1110, 1227, 1568
AsiGI	ACCGGT	1 cut(s)	1175
Asp700I	GAANNNNTTC	2 cut(s)	1691, 2422
AspLEI	GCGC	1 cut(s)	1859
AspS9I	GGNCC	3 cut(s)	46, 64, 907
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	6 cut(s)	130, 358, 658, 1165, 1501, 1862
AsuII	TTCGAA	1 cut(s)	368
AsuNHI	GCTAGC	1 cut(s)	1934
AvaI	CYCGRG	3 cut(s)	502, 623, 1090
AvaII	GGWCC	2 cut(s)	46, 907
BaeGI	GKGCMC	2 cut(s)	1429, 2238
BanII	GRGCYC	1 cut(s)	1926
Bbv12I	GWGCWC	1 cut(s)	1429
BbvI	GCAGC	8 cut(s)	241, 340, 1442, 1661, 1910, 1927, 2128, 2351
BccI	CCATC	8 cut(s)	203, 380, 484, 635, 1090, 1593, 1663, 2409
BceAI	ACGGC	4 cut(s)	41, 78, 1477, 1732
BcgI	CGANNNNNNTGC	4 cut(s)	14, 48, 955, 989
BciT130I	CCWGG	3 cut(s)	1513, 2040, 2283
BciVI	GTATCC	3 cut(s)	113, 491, 1028
BclI	TGATCA	2 cut(s)	1170, 1506
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	5 cut(s)	330, 1332, 1406, 1470, 1935
BfmI	CTRYAG	2 cut(s)	1416, 1913
BfoI	RGCGCY	1 cut(s)	1860
BfrI	CTTAAG	1 cut(s)	1295
BfuAI	ACCTGC	2 cut(s)	1735, 1823
BfuI	GTATCC	3 cut(s)	113, 491, 1028
BglI	GCCNNNNNGGC	2 cut(s)	41, 62
BisI	GCNGC	8 cut(s)	255, 354, 1456, 1650, 1899, 1916, 2117, 2340
BlsI	GCNGC	8 cut(s)	256, 355, 1457, 1651, 1900, 1917, 2118, 2341
Bme1390I	CCNGG	4 cut(s)	41, 1513, 2040, 2283
Bme18I	GGWCC	2 cut(s)	46, 907
BmeT110I	CYCGRG	3 cut(s)	502, 623, 1090
BmgT120I	GGNCC	3 cut(s)	46, 64, 907
BmiI	GGNNCC	4 cut(s)	327, 1290, 1923, 2399
BmrFI	CCNGG	4 cut(s)	41, 1513, 2040, 2283
BmrI	ACTGGG	2 cut(s)	753, 1275
BmsI	GCATC	4 cut(s)	181, 814, 1479, 2349
BmtI	GCTAGC	1 cut(s)	1938
BmuI	ACTGGG	2 cut(s)	753, 1275
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	2 cut(s)	1067, 1940
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	35, 412
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	1195
BsaJI	CCNNGG	6 cut(s)	141, 903, 1021, 1714, 1992, 2282
BsaWI	WCCGGW	4 cut(s)	11, 609, 1175, 1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	1918, 2283
Bse118I	RCCGGY	1 cut(s)	1175
Bse1I	ACTGG	5 cut(s)	748, 874, 1270, 1434, 2253
Bse3DI	GCAATG	3 cut(s)	867, 1635, 2259
BseAI	TCCGGA	1 cut(s)	1190
BseBI	CCWGG	3 cut(s)	1513, 2040, 2283
BseDI	CCNNGG	6 cut(s)	141, 903, 1021, 1714, 1992, 2282
BseGI	GGATG	6 cut(s)	495, 1101, 1594, 1674, 2002, 2157
BseLI	CCNNNNNNNGG	2 cut(s)	1918, 2283
BseMI	GCAATG	3 cut(s)	867, 1635, 2259
BseMII	CTCAG	2 cut(s)	210, 587
BseNI	ACTGG	5 cut(s)	748, 874, 1270, 1434, 2253
BseRI	GAGGAG	4 cut(s)	542, 911, 1566, 2258
BseSI	GKGCMC	2 cut(s)	1429, 2238
BseXI	GCAGC	8 cut(s)	241, 340, 1442, 1661, 1910, 1927, 2128, 2351
BseYI	CCCAGC	1 cut(s)	2087
BsgI	GTGCAG	2 cut(s)	339, 1713
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	6 cut(s)	56, 65, 902, 1618, 1991, 2265
BshTI	ACCGGT	1 cut(s)	1175
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	1429
BsiHKCI	CYCGRG	3 cut(s)	502, 623, 1090
BsiSI	CCGG	5 cut(s)	12, 41, 610, 1176, 1191
BslFI	GGGAC	2 cut(s)	2083, 2299
BslI	CCNNNNNNNGG	2 cut(s)	1918, 2283
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	2083, 2299
BsmI	GAATGC	2 cut(s)	862, 998
BsnI	GGCC	6 cut(s)	56, 65, 902, 1618, 1991, 2265
BsoBI	CYCGRG	3 cut(s)	502, 623, 1090
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	1429, 1926, 2238
Bsp13I	TCCGGA	1 cut(s)	1190
Bsp143I	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
Bsp19I	CCATGG	2 cut(s)	1021, 1992
BspACI	CCGC	4 cut(s)	44, 838, 988, 2232
BspANI	GGCC	6 cut(s)	56, 65, 902, 1618, 1991, 2265
BspCNI	CTCAG	2 cut(s)	211, 586
BspEI	TCCGGA	1 cut(s)	1190
BspHI	TCATGA	2 cut(s)	1198, 1317
BspLI	GGNNCC	4 cut(s)	327, 1290, 1923, 2399
BspMAI	CTGCAG	1 cut(s)	1917
BspMI	ACCTGC	2 cut(s)	1735, 1823
BspOI	GCTAGC	1 cut(s)	1938
BspPI	GGATC	3 cut(s)	234, 1366, 2100
BspT104I	TTCGAA	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	1295
BsrBI	CCGCTC	1 cut(s)	838
BsrDI	GCAATG	3 cut(s)	867, 1635, 2259
BsrFI	RCCGGY	1 cut(s)	1175
BsrI	ACTGG	5 cut(s)	748, 874, 1270, 1434, 2253
BssAI	RCCGGY	1 cut(s)	1175
BssECI	CCNNGG	6 cut(s)	141, 903, 1021, 1714, 1992, 2282
BssMI	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
BssNI	GRCGYC	1 cut(s)	1195
BssT1I	CCWWGG	3 cut(s)	903, 1021, 1992
Bst2UI	CCWGG	3 cut(s)	1513, 2040, 2283
Bst4CI	ACNGT	4 cut(s)	142, 454, 570, 652
Bst6I	CTCTTC	2 cut(s)	1329, 1543
BstACI	GRCGYC	1 cut(s)	1195
BstAFI	CTTAAG	1 cut(s)	1295
BstAPI	GCANNNNNTGC	1 cut(s)	1646
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	7 cut(s)	285, 794, 978, 1788, 1850, 1936, 2234
BstDEI	CTNAG	6 cut(s)	219, 480, 573, 1564, 1818, 2312
BstDSI	CCRYGG	4 cut(s)	141, 1021, 1714, 1992
BstF5I	GGATG	6 cut(s)	495, 1101, 1594, 1674, 2002, 2157
BstH2I	RGCGCY	1 cut(s)	1860
BstHHI	GCGC	1 cut(s)	1859
BstKTI	GATC	6 cut(s)	229, 1173, 1374, 1509, 2095, 2376
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
BstMCI	CGRYCG	1 cut(s)	305
BstNI	CCWGG	3 cut(s)	1513, 2040, 2283
BstNSI	RCATGY	5 cut(s)	675, 781, 984, 1087, 1441
BstSCI	CCNGG	4 cut(s)	39, 1511, 2038, 2281
BstSFI	CTRYAG	2 cut(s)	1416, 1913
BstSLI	GKGCMC	2 cut(s)	1429, 2238
BstV1I	GCAGC	8 cut(s)	241, 340, 1442, 1661, 1910, 1927, 2128, 2351
BstX2I	RGATCY	2 cut(s)	1371, 2092
BstYI	RGATCY	2 cut(s)	1371, 2092
BsuI	GTATCC	3 cut(s)	113, 491, 1028
BsuRI	GGCC	6 cut(s)	56, 65, 902, 1618, 1991, 2265
BtgI	CCRYGG	4 cut(s)	141, 1021, 1714, 1992
BtsCI	GGATG	6 cut(s)	495, 1101, 1594, 1674, 2002, 2157
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	566, 769, 1427
BveI	ACCTGC	2 cut(s)	1735, 1823
Cac8I	GCNNGC	7 cut(s)	285, 794, 978, 1788, 1850, 1936, 2234
CaiI	CAGNNNCTG	1 cut(s)	1045
CciI	TCATGA	2 cut(s)	1198, 1317
CfoI	GCGC	1 cut(s)	1859
Cfr10I	RCCGGY	1 cut(s)	1175
Cfr13I	GGNCC	3 cut(s)	46, 64, 907
CseI	GACGC	1 cut(s)	1214
CsiI	ACCWGGT	1 cut(s)	2038
Csp6I	GTAC	3 cut(s)	1087, 1263, 2189
CspAI	ACCGGT	1 cut(s)	1175
CviQI	GTAC	3 cut(s)	1087, 1263, 2189
DdeI	CTNAG	6 cut(s)	219, 480, 573, 1564, 1818, 2312
DpnI	GATC	6 cut(s)	228, 1172, 1373, 1508, 2094, 2375
DpnII	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
DraIII	CACNNNGTG	1 cut(s)	2111
Eam1104I	CTCTTC	2 cut(s)	1329, 1543
EarI	CTCTTC	2 cut(s)	1329, 1543
Eco130I	CCWWGG	3 cut(s)	903, 1021, 1992
Eco147I	AGGCCT	2 cut(s)	902, 1618
Eco24I	GRGCYC	1 cut(s)	1926
Eco47I	GGWCC	2 cut(s)	46, 907
Eco88I	CYCGRG	3 cut(s)	502, 623, 1090
EcoRI	GAATTC	3 cut(s)	241, 748, 1568
EcoRII	CCWGG	3 cut(s)	1511, 2038, 2281
EcoT14I	CCWWGG	3 cut(s)	903, 1021, 1992
EcoT22I	ATGCAT	2 cut(s)	724, 1545
EcoT38I	GRGCYC	1 cut(s)	1926
ErhI	CCWWGG	3 cut(s)	903, 1021, 1992
FaqI	GGGAC	2 cut(s)	2083, 2299
FauI	CCCGC	1 cut(s)	2225
FauNDI	CATATG	1 cut(s)	1792
FbaI	TGATCA	2 cut(s)	1170, 1506
FblI	GTMKAC	1 cut(s)	1864
Fnu4HI	GCNGC	8 cut(s)	255, 354, 1456, 1650, 1899, 1916, 2117, 2340
FokI	GGATG	6 cut(s)	502, 1108, 1601, 1681, 2009, 2164
FriOI	GRGCYC	1 cut(s)	1926
Fsp4HI	GCNGC	8 cut(s)	255, 354, 1456, 1650, 1899, 1916, 2117, 2340
FspBI	CTAG	5 cut(s)	330, 1332, 1406, 1470, 1935
GlaI	GCGC	1 cut(s)	1858
GluI	GCNGC	8 cut(s)	255, 354, 1456, 1650, 1899, 1916, 2117, 2340
GsaI	CCCAGC	1 cut(s)	2091
GsuI	CTGGAG	2 cut(s)	1067, 1940
HaeII	RGCGCY	1 cut(s)	1860
HaeIII	GGCC	6 cut(s)	56, 65, 902, 1618, 1991, 2265
HapII	CCGG	5 cut(s)	12, 41, 610, 1176, 1191
HgaI	GACGC	1 cut(s)	1214
HhaI	GCGC	1 cut(s)	1859
Hin1I	GRCGYC	1 cut(s)	1195
Hin6I	GCGC	1 cut(s)	1857
HinP1I	GCGC	1 cut(s)	1857
HincII	GTYRAC	4 cut(s)	741, 775, 1435, 1865
HindII	GTYRAC	4 cut(s)	741, 775, 1435, 1865
HinfI	GANTC	6 cut(s)	125, 437, 619, 1042, 1321, 2316
HpaI	GTTAAC	1 cut(s)	741
HpaII	CCGG	5 cut(s)	12, 41, 610, 1176, 1191
HphI	GGTGA	6 cut(s)	130, 358, 658, 1165, 1501, 1862
Hpy166II	GTNNAC	9 cut(s)	339, 450, 566, 741, 775, 1427, 1435, 1865, 2189
Hpy188I	TCNGA	6 cut(s)	316, 576, 1117, 1488, 1686, 2146
Hpy8I	GTNNAC	9 cut(s)	339, 450, 566, 741, 775, 1427, 1435, 1865, 2189
HpyCH4III	ACNGT	4 cut(s)	142, 454, 570, 652
HpyCH4IV	ACGT	2 cut(s)	446, 1195
HpyF3I	CTNAG	6 cut(s)	219, 480, 573, 1564, 1818, 2312
HpySE526I	ACGT	2 cut(s)	446, 1195
Hsp92I	GRCGYC	1 cut(s)	1195
HspAI	GCGC	1 cut(s)	1857
Kpn2I	TCCGGA	1 cut(s)	1190
Ksp22I	TGATCA	2 cut(s)	1170, 1506
KspAI	GTTAAC	1 cut(s)	741
Kzo9I	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
LmnI	GCTCC	6 cut(s)	280, 325, 835, 1783, 1921, 2124
Lsp1109I	GCAGC	8 cut(s)	241, 340, 1442, 1661, 1910, 1927, 2128, 2351
LweI	GCATC	4 cut(s)	181, 814, 1479, 2349
MabI	ACCWGGT	1 cut(s)	2038
MaeI	CTAG	5 cut(s)	330, 1332, 1406, 1470, 1935
MaeII	ACGT	2 cut(s)	446, 1195
MaeIII	GTNAC	6 cut(s)	58, 136, 533, 646, 829, 1627
MalI	GATC	6 cut(s)	228, 1172, 1373, 1508, 2094, 2375
MbiI	CCGCTC	1 cut(s)	838
MboI	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
MflI	RGATCY	2 cut(s)	1371, 2092
MhlI	GDGCHC	3 cut(s)	1429, 1926, 2238
MlyI	GAGTC	5 cut(s)	134, 446, 1051, 1315, 2325
MmeI	TCCRAC	2 cut(s)	672, 2030
Mph1103I	ATGCAT	2 cut(s)	724, 1545
MroI	TCCGGA	1 cut(s)	1190
MroXI	GAANNNNTTC	2 cut(s)	1691, 2422
MseI	TTAA	7 cut(s)	740, 1128, 1212, 1296, 1482, 1496, 2381
MslI	CAYNNNNRTG	5 cut(s)	102, 717, 959, 1380, 1875
MspA1I	CMGCKG	1 cut(s)	1918
MspCI	CTTAAG	1 cut(s)	1295
MspI	CCGG	5 cut(s)	12, 41, 610, 1176, 1191
MspR9I	CCNGG	4 cut(s)	41, 1513, 2040, 2283
Mva1269I	GAATGC	2 cut(s)	862, 998
MvaI	CCWGG	3 cut(s)	1513, 2040, 2283
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	2 cut(s)	1021, 1992
NdeI	CATATG	1 cut(s)	1792
NdeII	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
NheI	GCTAGC	1 cut(s)	1934
NlaIV	GGNNCC	4 cut(s)	327, 1290, 1923, 2399
NmuCI	GTSAC	5 cut(s)	58, 136, 533, 646, 829
NsiI	ATGCAT	2 cut(s)	724, 1545
NspI	RCATGY	5 cut(s)	675, 781, 984, 1087, 1441
NspV	TTCGAA	1 cut(s)	368
PaeR7I	CTCGAG	3 cut(s)	502, 623, 1090
PagI	TCATGA	2 cut(s)	1198, 1317
PaqCI	CACCTGC	1 cut(s)	1823
PceI	AGGCCT	2 cut(s)	902, 1618
PciI	ACATGT	3 cut(s)	777, 1083, 1437
PctI	GAATGC	2 cut(s)	862, 998
PdmI	GAANNNNTTC	2 cut(s)	1691, 2422
PfeI	GAWTC	1 cut(s)	619
PinAI	ACCGGT	1 cut(s)	1175
PkrI	GCNGC	8 cut(s)	256, 355, 1457, 1651, 1900, 1917, 2118, 2341
PleI	GAGTC	5 cut(s)	133, 445, 1050, 1315, 2324
PpsI	GAGTC	5 cut(s)	133, 445, 1050, 1315, 2324
PscI	ACATGT	3 cut(s)	777, 1083, 1437
Psp1406I	AACGTT	1 cut(s)	446
Psp6I	CCWGG	3 cut(s)	1511, 2038, 2281
PspFI	CCCAGC	1 cut(s)	2087
PspGI	CCWGG	3 cut(s)	1511, 2038, 2281
PspN4I	GGNNCC	4 cut(s)	327, 1290, 1923, 2399
PspPI	GGNCC	3 cut(s)	46, 64, 907
PspXI	VCTCGAGB	1 cut(s)	1090
PsrI	GAACNNNNNNTAC	2 cut(s)	188, 220
PstI	CTGCAG	1 cut(s)	1917
PstNI	CAGNNNCTG	1 cut(s)	1045
PsuI	RGATCY	2 cut(s)	1371, 2092
PvuII	CAGCTG	1 cut(s)	1918
RsaI	GTAC	3 cut(s)	1088, 1264, 2190
RsaNI	GTAC	3 cut(s)	1087, 1263, 2189
RseI	CAYNNNNRTG	5 cut(s)	102, 717, 959, 1380, 1875
SalI	GTCGAC	1 cut(s)	1863
SaqAI	TTAA	7 cut(s)	740, 1128, 1212, 1296, 1482, 1496, 2381
SatI	GCNGC	8 cut(s)	255, 354, 1456, 1650, 1899, 1916, 2117, 2340
Sau3AI	GATC	6 cut(s)	226, 1170, 1371, 1506, 2092, 2373
Sau96I	GGNCC	3 cut(s)	46, 64, 907
SchI	GAGTC	5 cut(s)	134, 446, 1051, 1315, 2325
ScrFI	CCNGG	4 cut(s)	41, 1513, 2040, 2283
SduI	GDGCHC	3 cut(s)	1429, 1926, 2238
SexAI	ACCWGGT	1 cut(s)	2038
SfaNI	GCATC	4 cut(s)	181, 814, 1479, 2349
SfcI	CTRYAG	2 cut(s)	1416, 1913
SfiI	GGCCNNNNNGGCC	1 cut(s)	62
Sfr274I	CTCGAG	3 cut(s)	502, 623, 1090
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	2 cut(s)	46, 907
SlaI	CTCGAG	3 cut(s)	502, 623, 1090
SmiMI	CAYNNNNRTG	5 cut(s)	102, 717, 959, 1380, 1875
SmlI	CTYRAG	6 cut(s)	50, 391, 502, 623, 1090, 1295
SmoI	CTYRAG	6 cut(s)	50, 391, 502, 623, 1090, 1295
SseBI	AGGCCT	2 cut(s)	902, 1618
SsiI	CCGC	4 cut(s)	44, 838, 988, 2232
SspMI	CTAG	5 cut(s)	330, 1332, 1406, 1470, 1935
StuI	AGGCCT	2 cut(s)	902, 1618
StyD4I	CCNGG	4 cut(s)	39, 1511, 2038, 2281
StyI	CCWWGG	3 cut(s)	903, 1021, 1992
TaaI	ACNGT	4 cut(s)	142, 454, 570, 652
TaiI	ACGT	2 cut(s)	449, 1198
TaqII	GACCGA	1 cut(s)	291
TatI	WGTACW	2 cut(s)	1086, 2188
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	7 cut(s)	740, 1128, 1212, 1296, 1482, 1496, 2381
Tru9I	TTAA	7 cut(s)	740, 1128, 1212, 1296, 1482, 1496, 2381
TscAI	CASTG	3 cut(s)	573, 769, 1434
TseFI	GTSAC	5 cut(s)	58, 136, 533, 646, 829
TseI	GCWGC	8 cut(s)	254, 353, 1455, 1649, 1898, 1915, 2116, 2339
Tsp45I	GTSAC	5 cut(s)	58, 136, 533, 646, 829
TspGWI	ACGGA	2 cut(s)	848, 1991
TspRI	CASTG	3 cut(s)	573, 769, 1434
Vha464I	CTTAAG	1 cut(s)	1295
VneI	GTGCAC	1 cut(s)	1425
VpaK11BI	GGWCC	2 cut(s)	46, 907
XapI	RAATTY	8 cut(s)	113, 241, 370, 708, 748, 1110, 1227, 1568
XbaI	TCTAGA	1 cut(s)	1469
XceI	RCATGY	5 cut(s)	675, 781, 984, 1087, 1441
XhoI	CTCGAG	3 cut(s)	502, 623, 1090
XmiI	GTMKAC	1 cut(s)	1864
XmnI	GAANNNNTTC	2 cut(s)	1691, 2422
XspI	CTAG	5 cut(s)	330, 1332, 1406, 1470, 1935
ZraI	GACGTC	1 cut(s)	1196
Zsp2I	ATGCAT	2 cut(s)	724, 1545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.