Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003392.1

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Reverse (-)

21315 .. 26069

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003392.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3486 bp

atgtcctcctccttctctgcccacctcctctccaaacctttacacacattctcttccctccaaatccaacaacccacatctcccaaaaggaccaccccaccccccaactcctctcttctcaaacccatctccgattcccgctcatggatcgacaccattcgctcccgaacccggtccagtcactacaaagaagccatctcaacctacatcgaaatgacccgtaccggtatcgaacccgacaactttgccttcccggcggtcctcaaggccgtcacggcccttcaagacttgaacttggggaagcagatacacgcccatgttgtcaaatttggatatgagtcatcttctgtcaccgtggcgaatactcttgtcaatgtgtatgggaaatgtggcgatattggagatgcgtacaaggtgttcgatggaatgactgagagggatcaggtttcttggaattccatgattgctgctttgtgtaggtttgaggaatgggagctggctttggaggcgtttaggtcgatgttttcggataatgtggagcctagctcgtttactttggtgagtgctgcacttgcttgttccaatttggataggcgtgatggcttgaggcttgggaagcaagttcatgcgtatagtataagaatgtgtgagtcgaaaacgtttactgtcaatgctttgatgtctatgtatgctaagttggggatggtgggatactcgagaggtgtgtttgagttgtttgaggagtgtgacttggtttcgtggaacaccatgataagttcactgtctcagaatgaccggtttgtggaggcattagagttcttccggttgatggttcttgagggaattagaccagatggggtgacggttgcgagtgttcttcctgcatgttctcatttggagatgttggaggcagggaaggaaattcatgcttatgcattgagagccaatgagctaactgggaattcttatgtgggcagtgctttagttgacatgtattgtaactgccggcaagttgaaagtggtcgtagagtttttaatgctgtcacggagcggagagttccactttggaatgcaatgattactggttatgcacaaaatgagtatgatgaggaggccttggacctgttccttgaaatgtatgctgtgtcggggcatagtccaaatgccaccacaatgtcgagtattgtgccagcatgtgtgcggtctaaagcattcttgggaaaagaaagtatccatggttttgtaataaagcggagtctggagaagaacaggtacgtgcaaaatgcgcttatggacatgtactcgaggatggggagaacagaaattgcagaaactatatttaacagcatggaaggaaaagacattgtatcatggaacaccatgatcaccggttatgtcatttccggacgtcatgatgacgcacttaatctgctatatgaattgcaaagagtagaagaaaacaagaacaccaatggtactgggtatgataatgaaagaagggttccccttaagccaaatactataacactcatgactcttcttcctagttgtgctgtattatcagcactcgctaaagggaaagagatccatgcttatgctactagacatttgttggcactagatattgctgtaggtagtgcactggttgacatgtatgctaaatgtggctgcttagatttatctagagccatgtttaatcagatgccgttaaagaatgtgatcacctggaatgtgcttatcatggcttatggtatgcatggaagaggagaggaagccttagaactctttaggaatatggtggatgaaggaagatggaataaagagataaggcctaatgaagttacattcattgcaatttttgcagcttgtagtcattctgggatggtaaatgaaggtctgaacttgttccacacaatgaaacaagaccacggcattgaacctgcaccagaccattatgcttgtgttgtggatttgcttggtcgggctggtagtgtggagcgagcatatgaaatcatcaaaaccatgccttctgagtttgataaagcaggtgcctggagtagcttgcttggtgcttgtcgactccaccaaaatgtagagattggagaaattgcagctaatcatctcctgcagctggagcctgatgtggctagtcactatgttctactctctaatatctactcatcttctggactttgggaaaaggccatggatctccggagaaaaatgaaggaaatgggagtgagaaaagagcctggttgtagttggatcgagtttgaagatgaggttcataagtttttggctggggatctgtcgcacccacaaagtgagcagctccatgaatatctcgaaaccctgtcagaaaggatgaaaaaggagggttatgtgcctgatacttcttgtgtacttcacaatgttgatgaggacgagaaggaaactttactctgtgggcacagtgaaaaactggcaatggctttcggcctcctcaatacccgtccagggactaccattagagttgccaagaaccttagagtctgtaatgactgccaccttgcagcgaaatatatctcaaagatgctggacagggagatcattttaagagatcaaagcaacaatggcggatgtgaagatggcgatgctgagacgtttgctttccggaccgagatcaaccagcttctgagcttgatcatcaatacgttctacagcaacaaggagatttttcttcgcgagcttatcagcaattcatctgatgctctggacaagattagattcgagagtcttacggataagagcaagcttgatgctcagccggagcttttcatcaggattgttccggataagaccaacaatactctctccatcattgatagcgggatcggcatgattaaagcagatttggtgaacaatatgggcacaattgcaaggtctggaaccaaggagtttacggaagcattggcttctggagtttctgatgtgagcatgattggacagtttggtgttggtttctattcggcatatcttgttgcagagaaggtcattgtgactacaaagcacaatgatgatgagcaatacatctgggagtctcaggctggtggttcattcacagtgacaagggatgtcaatggcgagcagcttggcaggggcaccaagatcactctcttcctcaaggaggaccagttggaatacttggaagagaggaggatcaaagaccttgtgaagaagcattccaaatttatcagctatcccatctacttgtggactgagaagacaactgaaaaggagatctgtgatgatgaagaggacgaacccaagaaggaagagaaaggagatattgaggaagttgatgaggacaaggagaaagaagggaagaagaagaagaagaagatcaaggaagtttctcatgagtgggaactcatcaacaagcagaaaccaatctggctgcgcaagcctaaggaaatcaccaaggatgaatatgcctcattctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1161

Amino Acids

130.88

Weight (kDa)

5.59

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2036
AatII	GACGTC	1 cut(s)	1411
Acc16I	TGCGCA	1 cut(s)	3440
Acc36I	ACCTGC	2 cut(s)	1948, 2036
AccB1I	GGYRCC	2 cut(s)	2048, 3140
AccBSI	CCGCTC	2 cut(s)	141, 1051
AccI	GTMKAC	1 cut(s)	2077
AccII	CGCG	1 cut(s)	2724
AccIII	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
AciI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
AclI	AACGTT	1 cut(s)	659
AclWI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
AcsI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
AcyI	GRCGYC	1 cut(s)	1408
AdeI	CACNNNGTG	1 cut(s)	2324
AfaI	GTAC	6 cut(s)	223, 410, 1274, 1301, 1477, 2403
AfiI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
AflII	CTTAAG	1 cut(s)	1508
AflIII	ACRYGT	3 cut(s)	990, 1296, 1650
AgeI	ACCGGT	3 cut(s)	224, 795, 1388
AgsI	TTSAA	6 cut(s)	284, 292, 1016, 1133, 1937, 2276
AjnI	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
Alw21I	GWGCWC	1 cut(s)	1642
Alw26I	GTCTC	3 cut(s)	789, 2633, 3084
Alw44I	GTGCAC	1 cut(s)	1638
AlwI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
AlwNI	CAGNNNCTG	1 cut(s)	2674
Ama87I	CYCGRG	2 cut(s)	715, 1303
Aor13HI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
AoxI	GGCC	6 cut(s)	267, 276, 1113, 1829, 2202, 2476
ApaLI	GTGCAC	1 cut(s)	1638
ApoI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
AsiGI	ACCGGT	3 cut(s)	224, 795, 1388
Asp700I	GAANNNNTTC	1 cut(s)	1904
AspLEI	GCGC	2 cut(s)	1288, 3441
AspS9I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
AsuC2I	CCSGG	2 cut(s)	172, 254
AsuHPI	GGTGA	7 cut(s)	343, 571, 871, 1378, 1714, 2908, 3448
AvaI	CYCGRG	2 cut(s)	715, 1303
AvaII	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
AxyI	CCTNAGG	1 cut(s)	3447
BaeGI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BanI	GGYRCC	2 cut(s)	2048, 3140
BarI	GAAGNNNNNNTAC	2 cut(s)	1256, 1288
BbsI	GAAGAC	1 cut(s)	3269
Bbv12I	GWGCWC	1 cut(s)	1642
BceAI	ACGGC	4 cut(s)	254, 291, 1690, 1945
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 1168, 1202
BciT130I	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BciVI	GTATCC	2 cut(s)	704, 1241
BclI	TGATCA	3 cut(s)	1383, 1719, 2682
BcnI	CCSGG	2 cut(s)	172, 254
BcoDI	GTCTC	3 cut(s)	789, 2633, 3084
BfaI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
BfmI	CTRYAG	3 cut(s)	1629, 2126, 2698
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	2 cut(s)	1948, 2036
BfuI	GTATCC	2 cut(s)	704, 1241
BglI	GCCNNNNNGGC	2 cut(s)	254, 275
BglII	AGATCT	1 cut(s)	3279
BlpI	GCTNAGC	1 cut(s)	2802
Bme1390I	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
Bme18I	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
BmeT110I	CYCGRG	2 cut(s)	715, 1303
BmgT120I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
BmiI	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
BmrFI	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
BmrI	ACTGGG	2 cut(s)	966, 1488
BmsI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
BmuI	ACTGGG	2 cut(s)	966, 1488
BpiI	GAAGAC	1 cut(s)	3269
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	4 cut(s)	1280, 2074, 2153, 2979
Bpu1102I	GCTNAGC	1 cut(s)	2802
BpuEI	CTTGAG	4 cut(s)	248, 625, 857, 3146
BpuMI	CCSGG	2 cut(s)	172, 254
BsaAI	YACGTR	1 cut(s)	1276
BsaHI	GRCGYC	1 cut(s)	1408
BsaJI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BsaWI	WCCGGW	8 cut(s)	224, 795, 822, 1388, 1403, 2214, 2652, 2830
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 3158, 3188
Bsc4I	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
Bse118I	RCCGGY	4 cut(s)	224, 795, 1005, 1388
Bse1I	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
Bse21I	CCTNAGG	1 cut(s)	3447
Bse3DI	GCAATG	3 cut(s)	1080, 1848, 2472
BseAI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
BseBI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BseDI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BseGI	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BseLI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
BseMI	GCAATG	3 cut(s)	1080, 1848, 2472
BseMII	CTCAG	8 cut(s)	423, 800, 2022, 2628, 2666, 2816, 3095, 3249
BseNI	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
BseRI	GAGGAG	7 cut(s)	17, 100, 755, 1124, 1779, 2471, 3208
BseSI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BseYI	CCCAGC	1 cut(s)	2300
BsgI	GTGCAG	2 cut(s)	552, 1926
Bsh1236I	CGCG	1 cut(s)	2724
BshFI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BshNI	GGYRCC	2 cut(s)	2048, 3140
BshTI	ACCGGT	3 cut(s)	224, 795, 1388
BsiHKAI	GWGCWC	1 cut(s)	1642
BsiHKCI	CYCGRG	2 cut(s)	715, 1303
BslFI	GGGAC	1 cut(s)	2512
BslI	CCNNNNNNNGG	7 cut(s)	144, 171, 802, 829, 2131, 2496, 3166
BsmAI	GTCTC	3 cut(s)	789, 2633, 3084
BsmBI	CGTCTC	1 cut(s)	2633
BsmFI	GGGAC	1 cut(s)	2512
BsmI	GAATGC	3 cut(s)	1075, 1211, 3220
BsnI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BsoBI	CYCGRG	2 cut(s)	715, 1303
Bsp1286I	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
Bsp13I	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
Bsp1720I	GCTNAGC	1 cut(s)	2802
Bsp19I	CCATGG	2 cut(s)	1234, 2205
Bsp68I	TCGCGA	1 cut(s)	2724
BspACI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
BspANI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BspCNI	CTCAG	8 cut(s)	424, 799, 2023, 2629, 2667, 2815, 3094, 3250
BspEI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
BspFNI	CGCG	1 cut(s)	2724
BspHI	TCATGA	3 cut(s)	1411, 1530, 3397
BspLI	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
BspMAI	CTGCAG	1 cut(s)	2130
BspMI	ACCTGC	2 cut(s)	1948, 2036
BspPI	GGATC	8 cut(s)	155, 447, 1579, 2217, 2273, 2313, 2879, 3206
BspT107I	GGYRCC	2 cut(s)	2048, 3140
BspTI	CTTAAG	1 cut(s)	1508
BsrBI	CCGCTC	2 cut(s)	141, 1051
BsrDI	GCAATG	3 cut(s)	1080, 1848, 2472
BsrFI	RCCGGY	4 cut(s)	224, 795, 1005, 1388
BsrI	ACTGG	7 cut(s)	177, 961, 1087, 1483, 1647, 2466, 3172
BssAI	RCCGGY	4 cut(s)	224, 795, 1005, 1388
BssECI	CCNNGG	8 cut(s)	354, 1116, 1234, 1927, 2205, 2495, 2931, 3459
BssNI	GRCGYC	1 cut(s)	1408
BssT1I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Bst2UI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
Bst4CI	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
Bst6I	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
BstACI	GRCGYC	1 cut(s)	1408
BstAFI	CTTAAG	1 cut(s)	1508
BstAPI	GCANNNNNTGC	1 cut(s)	1859
BstBAI	YACGTR	1 cut(s)	1276
BstC8I	GCNNGC	9 cut(s)	498, 1007, 1191, 2001, 2063, 2726, 2792, 3125, 3443
BstDSI	CCRYGG	4 cut(s)	354, 1234, 1927, 2205
BstENI	CCTNNNNNAGG	1 cut(s)	3164
BstF5I	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BstFNI	CGCG	1 cut(s)	2724
BstHHI	GCGC	2 cut(s)	1288, 3441
BstMAI	GTCTC	3 cut(s)	789, 2633, 3084
BstNI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
BstNSI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
BstSCI	CCNGG	6 cut(s)	170, 252, 1724, 2051, 2251, 2494
BstSFI	CTRYAG	3 cut(s)	1629, 2126, 2698
BstSLI	GKGCMC	4 cut(s)	1642, 2451, 2912, 3143
BstUI	CGCG	1 cut(s)	2724
BstV2I	GAAGAC	1 cut(s)	3269
BstX2I	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
BstYI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
Bsu36I	CCTNAGG	1 cut(s)	3447
BsuI	GTATCC	2 cut(s)	704, 1241
BsuRI	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
BtgI	CCRYGG	4 cut(s)	354, 1234, 1927, 2205
BtgZI	GCGATG	1 cut(s)	2646
BtsCI	GGATG	8 cut(s)	708, 1314, 1807, 1887, 2370, 2624, 3118, 3469
BtsI	GCAGTG	1 cut(s)	982
BtsIMutI	CAGTG	5 cut(s)	779, 982, 1640, 2458, 3108
BtuMI	TCGCGA	1 cut(s)	2724
BveI	ACCTGC	2 cut(s)	1948, 2036
Cac8I	GCNNGC	9 cut(s)	498, 1007, 1191, 2001, 2063, 2726, 2792, 3125, 3443
CaiI	CAGNNNCTG	1 cut(s)	2674
CciI	TCATGA	3 cut(s)	1411, 1530, 3397
CfoI	GCGC	2 cut(s)	1288, 3441
Cfr10I	RCCGGY	4 cut(s)	224, 795, 1005, 1388
Cfr13I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
CpoI	CGGWCCG	1 cut(s)	2655
CseI	GACGC	1 cut(s)	1427
Csp6I	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
CspAI	ACCGGT	3 cut(s)	224, 795, 1388
CspI	CGGWCCG	1 cut(s)	2655
CviQI	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
DraIII	CACNNNGTG	1 cut(s)	2324
Eam1104I	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
EarI	CTCTTC	8 cut(s)	58, 120, 1542, 1756, 3161, 3183, 3288, 3309
EciI	GGCGGA	1 cut(s)	2631
Eco130I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Eco147I	AGGCCT	2 cut(s)	1115, 1831
Eco47I	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
Eco81I	CCTNAGG	1 cut(s)	3447
Eco88I	CYCGRG	2 cut(s)	715, 1303
EcoNI	CCTNNNNNAGG	1 cut(s)	3164
EcoRI	GAATTC	2 cut(s)	454, 961
EcoRII	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
EcoT14I	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
EcoT22I	ATGCAT	2 cut(s)	937, 1758
ErhI	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
Esp3I	CGTCTC	1 cut(s)	2633
FaqI	GGGAC	1 cut(s)	2512
FauI	CCCGC	2 cut(s)	146, 2861
FauNDI	CATATG	1 cut(s)	2005
FbaI	TGATCA	3 cut(s)	1383, 1719, 2682
FblI	GTMKAC	1 cut(s)	2077
FokI	GGATG	8 cut(s)	715, 1321, 1814, 1894, 2377, 2631, 3125, 3476
FspBI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
FspI	TGCGCA	1 cut(s)	3440
GlaI	GCGC	2 cut(s)	1287, 3440
GsaI	CCCAGC	1 cut(s)	2304
GsuI	CTGGAG	4 cut(s)	1280, 2074, 2153, 2979
HaeIII	GGCC	6 cut(s)	269, 278, 1115, 1831, 2204, 2478
HgaI	GACGC	1 cut(s)	1427
HhaI	GCGC	2 cut(s)	1288, 3441
Hin1I	GRCGYC	1 cut(s)	1408
Hin6I	GCGC	2 cut(s)	1286, 3439
HinP1I	GCGC	2 cut(s)	1286, 3439
HincII	GTYRAC	3 cut(s)	988, 1648, 2078
HindII	GTYRAC	3 cut(s)	988, 1648, 2078
HindIII	AAGCTT	1 cut(s)	2792
HphI	GGTGA	7 cut(s)	343, 571, 871, 1378, 1714, 2908, 3448
HpyCH4III	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
HpyCH4IV	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
HpySE526I	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
Hsp92I	GRCGYC	1 cut(s)	1408
HspAI	GCGC	2 cut(s)	1286, 3439
Kpn2I	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
KroI	GCCGGC	1 cut(s)	1005
KroNI	GCCGGC	1 cut(s)	1007
Ksp22I	TGATCA	3 cut(s)	1383, 1719, 2682
LmnI	GCTCC	8 cut(s)	167, 493, 538, 1048, 1996, 2134, 2337, 2809
LweI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
MaeI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
MaeII	ACGT	5 cut(s)	659, 1275, 1408, 2642, 2693
MbiI	CCGCTC	2 cut(s)	141, 1051
MfeI	CAATTG	1 cut(s)	2913
MflI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
MhlI	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
MlyI	GAGTC	8 cut(s)	347, 659, 1264, 1528, 2073, 2538, 2782, 3086
MmeI	TCCRAC	4 cut(s)	91, 885, 2243, 3156
Mph1103I	ATGCAT	2 cut(s)	937, 1758
MroI	TCCGGA	4 cut(s)	1403, 2214, 2652, 2830
MroNI	GCCGGC	1 cut(s)	1005
MroXI	GAANNNNTTC	1 cut(s)	1904
MseI	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
MslI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
MspA1I	CMGCKG	1 cut(s)	2131
MspCI	CTTAAG	1 cut(s)	1508
MspR9I	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
MunI	CAATTG	1 cut(s)	2913
Mva1269I	GAATGC	3 cut(s)	1075, 1211, 3220
MvaI	CCWGG	4 cut(s)	1726, 2053, 2253, 2496
MvnI	CGCG	1 cut(s)	2724
NaeI	GCCGGC	1 cut(s)	1007
NciI	CCSGG	2 cut(s)	172, 254
NcoI	CCATGG	2 cut(s)	1234, 2205
NdeI	CATATG	1 cut(s)	2005
NgoMIV	GCCGGC	1 cut(s)	1005
NlaIV	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
NmuCI	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
NruI	TCGCGA	1 cut(s)	2724
NsbI	TGCGCA	1 cut(s)	3440
NsiI	ATGCAT	2 cut(s)	937, 1758
NspI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
PaeR7I	CTCGAG	2 cut(s)	715, 1303
PagI	TCATGA	3 cut(s)	1411, 1530, 3397
PaqCI	CACCTGC	1 cut(s)	2036
PceI	AGGCCT	2 cut(s)	1115, 1831
PciI	ACATGT	3 cut(s)	990, 1296, 1650
PctI	GAATGC	3 cut(s)	1075, 1211, 3220
PdiI	GCCGGC	1 cut(s)	1007
PdmI	GAANNNNTTC	1 cut(s)	1904
PfeI	GAWTC	2 cut(s)	134, 2766
PinAI	ACCGGT	3 cut(s)	224, 795, 1388
PleI	GAGTC	8 cut(s)	346, 658, 1263, 1528, 2073, 2537, 2781, 3085
PpsI	GAGTC	8 cut(s)	346, 658, 1263, 1528, 2073, 2537, 2781, 3085
Ppu21I	YACGTR	1 cut(s)	1276
PscI	ACATGT	3 cut(s)	990, 1296, 1650
Psp1406I	AACGTT	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
PspFI	CCCAGC	1 cut(s)	2300
PspGI	CCWGG	4 cut(s)	1724, 2051, 2251, 2494
PspN4I	GGNNCC	6 cut(s)	540, 1503, 2050, 2136, 2929, 3142
PspPI	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
PspXI	VCTCGAGB	1 cut(s)	1303
PsrI	GAACNNNNNNTAC	2 cut(s)	401, 433
PstI	CTGCAG	1 cut(s)	2130
PstNI	CAGNNNCTG	1 cut(s)	2674
PsuI	RGATCY	4 cut(s)	1584, 2209, 2305, 3279
PvuII	CAGCTG	1 cut(s)	2131
RruI	TCGCGA	1 cut(s)	2724
RsaI	GTAC	6 cut(s)	223, 410, 1274, 1301, 1477, 2403
RsaNI	GTAC	6 cut(s)	222, 409, 1273, 1300, 1476, 2402
RseI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
Rsr2I	CGGWCCG	1 cut(s)	2655
RsrII	CGGWCCG	1 cut(s)	2655
SalI	GTCGAC	1 cut(s)	2076
SaqAI	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
Sau96I	GGNCC	7 cut(s)	90, 174, 259, 277, 1120, 2655, 3169
SchI	GAGTC	8 cut(s)	347, 659, 1264, 1528, 2073, 2538, 2782, 3086
ScrFI	CCNGG	6 cut(s)	172, 254, 1726, 2053, 2253, 2496
SduI	GDGCHC	4 cut(s)	1642, 2451, 2912, 3143
SfaNI	GCATC	6 cut(s)	394, 1692, 2562, 2623, 2737, 2788
SfcI	CTRYAG	3 cut(s)	1629, 2126, 2698
SfiI	GGCCNNNNNGGCC	1 cut(s)	275
Sfr274I	CTCGAG	2 cut(s)	715, 1303
SinI	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
SlaI	CTCGAG	2 cut(s)	715, 1303
SmiMI	CAYNNNNRTG	7 cut(s)	212, 315, 930, 1172, 1593, 2088, 3054
SmlI	CTYRAG	7 cut(s)	263, 604, 715, 836, 1303, 1508, 3161
SmoI	CTYRAG	7 cut(s)	263, 604, 715, 836, 1303, 1508, 3161
SseBI	AGGCCT	2 cut(s)	1115, 1831
SsiI	CCGC	7 cut(s)	139, 257, 1051, 1201, 1252, 2616, 2868
SspMI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
StuI	AGGCCT	2 cut(s)	1115, 1831
StyD4I	CCNGG	6 cut(s)	170, 252, 1724, 2051, 2251, 2494
StyI	CCWWGG	5 cut(s)	1116, 1234, 2205, 2931, 3459
TaaI	ACNGT	7 cut(s)	355, 667, 783, 865, 2453, 2988, 3103
TaiI	ACGT	5 cut(s)	662, 1278, 1411, 2645, 2696
TaqII	GACCGA	1 cut(s)	2672
TatI	WGTACW	2 cut(s)	1299, 2401
TfiI	GAWTC	2 cut(s)	134, 2766
Tru1I	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
Tru9I	TTAA	8 cut(s)	1035, 1341, 1425, 1509, 1695, 1709, 2594, 2883
TscAI	CASTG	5 cut(s)	786, 982, 1647, 2458, 3108
TseFI	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
Tsp45I	GTSAC	9 cut(s)	179, 271, 349, 746, 859, 1042, 2150, 3037, 3103
TspGWI	ACGGA	3 cut(s)	1061, 2795, 2957
TspRI	CASTG	5 cut(s)	786, 982, 1647, 2458, 3108
Vha464I	CTTAAG	1 cut(s)	1508
VneI	GTGCAC	1 cut(s)	1638
VpaK11BI	GGWCC	6 cut(s)	90, 174, 259, 1120, 2655, 3169
XagI	CCTNNNNNAGG	1 cut(s)	3164
XapI	RAATTY	5 cut(s)	326, 454, 921, 961, 3227
XbaI	TCTAGA	1 cut(s)	1682
XceI	RCATGY	5 cut(s)	888, 994, 1197, 1300, 1654
XhoI	CTCGAG	2 cut(s)	715, 1303
XmiI	GTMKAC	1 cut(s)	2077
XmnI	GAANNNNTTC	1 cut(s)	1904
XspI	CTAG	7 cut(s)	543, 1545, 1602, 1619, 1683, 2148, 3484
ZraI	GACGTC	1 cut(s)	1409
Zsp2I	ATGCAT	2 cut(s)	937, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.