Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Forward (+)

15551623 .. 15554651

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGTCCTCCTCCTTCTCTACCCACCTCCTCTCCAAACCTTTACACACATTTTCTTCCCTCCAAATCCAACAACCCACATCTCCCAAAAGGACCACTCCACCACCCAAACCCATCTCCGATTCCCGCACATGGATCGACACCATTCGCTCCCGAACCCGGTCCAGTCACTACAAAGAAGCCATCTCAACGTACATCGAAATGACCCGTTCCGGTATCGAACCCGACAACTTTGCCTTCCCGGCGGTCCTCAAGGCCGTCACGGCCCTTCAAGACTTGAACTTGGGGAAGCAGATACACGCCCATGTTGTCAAATTTGGATACGAGTCATCTTCTGTCACCGTGGCGAATACTCTTGTCAATGTGTATGGGAAGTGTGGCGATATTGGAGATGCGTATAAGGTGTTCGATGGAATGACTGAGAGGGATCAGGTTTCTTGGAATTCCATGATTGCTGCTTTGTGTAGGTTTGAGGAATGGGAGCTGGCTTTGGAGGCGTTTCGGTCGATGTTTTCGGATAATGTGGAGCCTAGCTCGTTTACTTTGGTGAGTGCTGCACTTGCTTGTTCGAATTTGGATAGGCGTGATGGCTTGAGGCTTGGGAAGCAAGTTCATGCGTATAGTATGAGAATGTGTGAGTCGAAAACGTTTACTGTCAATGCTTTGATGTCTATGTATGCTAAGTTGGGGATGGTGGGATACTCGAGAGGTGTGTTTGAGTTGTTTGAGGAGTGTGACTTGGTTTCGTGGAACACCATGATAAGTTCACTGTCTCAGAATGACAGGTTTGTGGAGGCATTAGAGTTCTTCCGGTTGATGATTCTCGAGGGAATTAGACCAGATGGGGTGACGGTTGCGAGTGTTCTTCCTGCATGTTCTCATTTGGAGATGTTGGAGGCAGGGAAGGAAATTCATGCTTATGCATTGAGAGCCAATGAGTTAACTGGGAATTCTTATGTGGGCAGTGCTTTAGTTGACATGTATTGCAACTGCCAGCAAGTTGAGAGTGGTCGTAGAGTTTTTGATGCTGTCACGGAGCGGAGAGTTCCACTTTGGAATGCAATGATTACTGGTTATGCACAAAATGAGTATGATGAGGAGGCCTTGGACCTGTTCCTTGAAATGTATGCTGTGTCAGGGCATAGTCCAAATGCCACCACAATGTCGAGTATTGTGCCAGCATGTGTGCGGTCTAAAGCATTCTTGGGGAAAGAAAGTATCCATGGTTTTGTAGTAAAGCAGAGTCTGGAGAAGAACAGGTATGTGCAAAATGCACTTATGGACATGTACTCGAGGATGGGGAGAACAGAAATTTCAGAAACTATATTTAACAGCATGGAAGGAAAAGACATTGTATCATGGAACACCATGATCACCGGTTATGTTATTTCCGGACGTCATGATGACGCACTTAATCTGCTATATGAAATTCAAAGAGTAGAAGAAAACAAGAACACCAATGGTACTGGGTATGATAATGAAAGAAGGGTTCCCCTTAAGCCAAATACTATAACACTCATGACTCTTCTTCCTAGTTGTGCTGTATTATCAGCACTCGCTAAAGGGAAAGAGATCCATGCTTATGCTAATAGACATTTGTTGGCACTAGATATTGCTGTAGGTAGTGCACTGGTTGACATGTATGCTAAATGTGGCTGCTTGGATTTATCTAGAGCCATGTTTAATCAGATGCCGTTAAAGAATGTGATCACCTGGAATGTGCTTATCATGGCTTATGGTATGCATGGAAGAGGAGAGGAAGCCTTAGAATTCTTTAGGAATATGGTGGATGAAGGAAGATGGAATAAAGAGATAAGGCCTAATGAAGTTACATTCATTGCAATTTTTGCAGCTTGTAGTCATTCTGGGATGGTAGATGAAGGTCTGAACTTGTTCCACACAATGAAACAAGACCACGGCATTGAACCTGCACCAGACCATTATGCTTGTGTTGTGGATTTGCTTGGTCGGGCTGGTAGTGTGGAGCGAGCATATGAAATCATCAAAACCATGCCTTCTAAGTTTGATAAAGCAGGTGCTTGGAGTAGCTTGCTTGGCGCTTGTCGACTTCACCAAAATGTAGAGATTGGAGAAATTGCAGCTAATCATCTCCTGCAGCTGGAGCCCGATGTGGCTAGCCACTATGTTCTACTCTCCAATATCTACTCATCTTCTGGACTTTGGGAAAAGGCCATGGATGTCCGTAGAAAAATGAAGGAAATGGGAGTAAGGAAAGAACCTGGTTGTAGTTGGATTGAGTTTGAAGATGAGGTTCATAAGTTTTTGGCTGGGGATCTGTCCCACCCACAAAGTGAGCAGCTCCATGAATATCTCGAAACCCTGTCAGAAAGGATGAAAAAGGAGGGTTATGTGCCTGATACTTCTTGTGTACTTCACAATGTTGATGAGGACGAGAAAGAAACTTTACTTTGCGGGCACAGCGAGAAACTGGCAATGGCTTTCGGCCTCCTCAATACCCGTCCAGGGACTACCATTAGAGTTGCCAAGAACCTTAGAGTCTGTAATGACTGCCACCTTGCAGCGAAATATATCTCAAAGATGCTGGACAGGGAGATCATTTTAAGAGATGTAAGAAGGTTCCATCATTTTAGAAATGGAAATTGTTCATGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

880

Amino Acids

98.97

Weight (kDa)

5.97

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	142 - 180	1.2e-07	PPR repeat family
PPR_2	PF13041	245 - 292	7.3e-08	PPR repeat family
PPR	PF01535	247 - 277	3.9e-07	PPR repeat
PPR_2	PF13041	350 - 395	3.4e-06	PPR repeat family
PPR_2	PF13041	566 - 598	2.9e-06	PPR repeat family
PPR	PF01535	569 - 598	1.2e-07	PPR repeat
E_motif	PF20431	690 - 752	2.4e-21	E motif
Eplus_motif	PF20430	757 - 784	8e-07	E+ motif
DYW_deaminase	PF14432	788 - 880	7.1e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2021
AatII	GACGTC	1 cut(s)	1396
Acc36I	ACCTGC	2 cut(s)	1933, 2021
AccBSI	CCGCTC	1 cut(s)	1036
AccI	GTMKAC	1 cut(s)	2062
AccIII	TCCGGA	1 cut(s)	1388
AciI	CCGC	5 cut(s)	124, 242, 1036, 1186, 2430
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	4 cut(s)	140, 432, 1564, 2298
AcsI	RAATTY	8 cut(s)	311, 439, 568, 906, 946, 1308, 1425, 1766
AcyI	GRCGYC	1 cut(s)	1393
AdeI	CACNNNGTG	1 cut(s)	2309
AfaI	GTAC	4 cut(s)	191, 1286, 1462, 2388
AfiI	CCNNNNNNNGG	4 cut(s)	129, 156, 2116, 2481
AflII	CTTAAG	1 cut(s)	1493
AflIII	ACRYGT	3 cut(s)	975, 1281, 1635
AgeI	ACCGGT	1 cut(s)	1373
AgsI	TTSAA	6 cut(s)	269, 277, 1118, 1430, 1922, 2261
AjnI	CCWGG	3 cut(s)	1709, 2236, 2479
AluBI	AGCT	7 cut(s)	481, 531, 1850, 2046, 2099, 2116, 2317
AluI	AGCT	7 cut(s)	481, 531, 1850, 2046, 2099, 2116, 2317
Alw21I	GWGCWC	1 cut(s)	1627
Alw26I	GTCTC	1 cut(s)	774
Alw44I	GTGCAC	1 cut(s)	1623
AlwI	GGATC	4 cut(s)	140, 432, 1564, 2298
AlwNI	CAGNNNCTG	1 cut(s)	1243
Ama87I	CYCGRG	3 cut(s)	700, 821, 1288
Aor13HI	TCCGGA	1 cut(s)	1388
AoxI	GGCC	6 cut(s)	252, 261, 1098, 1814, 2187, 2461
ApaLI	GTGCAC	1 cut(s)	1623
ApeKI	GCWGC	8 cut(s)	452, 551, 1653, 1847, 2096, 2113, 2314, 2537
ApoI	RAATTY	8 cut(s)	311, 439, 568, 906, 946, 1308, 1425, 1766
AsiGI	ACCGGT	1 cut(s)	1373
Asp700I	GAANNNNTTC	2 cut(s)	1889, 2620
AspLEI	GCGC	1 cut(s)	2057
AspS9I	GGNCC	5 cut(s)	90, 159, 244, 262, 1105
AsuC2I	CCSGG	2 cut(s)	157, 239
AsuHPI	GGTGA	6 cut(s)	328, 556, 856, 1363, 1699, 2060
AsuII	TTCGAA	1 cut(s)	566
AsuNHI	GCTAGC	1 cut(s)	2132
AvaI	CYCGRG	3 cut(s)	700, 821, 1288
AvaII	GGWCC	4 cut(s)	90, 159, 244, 1105
BaeGI	GKGCMC	2 cut(s)	1627, 2436
BanII	GRGCYC	1 cut(s)	2124
Bbv12I	GWGCWC	1 cut(s)	1627
BbvI	GCAGC	8 cut(s)	439, 538, 1640, 1859, 2108, 2125, 2326, 2549
BceAI	ACGGC	4 cut(s)	239, 276, 1675, 1930
BcgI	CGANNNNNNTGC	6 cut(s)	115, 149, 212, 246, 1153, 1187
BciT130I	CCWGG	3 cut(s)	1711, 2238, 2481
BciVI	GTATCC	3 cut(s)	311, 689, 1226
BclI	TGATCA	2 cut(s)	1368, 1704
BcnI	CCSGG	2 cut(s)	157, 239
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	5 cut(s)	528, 1530, 1604, 1668, 2133
BfmI	CTRYAG	2 cut(s)	1614, 2111
BfoI	RGCGCY	1 cut(s)	2058
BfrI	CTTAAG	1 cut(s)	1493
BfuAI	ACCTGC	2 cut(s)	1933, 2021
BfuI	GTATCC	3 cut(s)	311, 689, 1226
BglI	GCCNNNNNGGC	2 cut(s)	239, 260
BisI	GCNGC	8 cut(s)	453, 552, 1654, 1848, 2097, 2114, 2315, 2538
BlsI	GCNGC	8 cut(s)	454, 553, 1655, 1849, 2098, 2115, 2316, 2539
Bme1390I	CCNGG	5 cut(s)	157, 239, 1711, 2238, 2481
Bme18I	GGWCC	4 cut(s)	90, 159, 244, 1105
BmeT110I	CYCGRG	3 cut(s)	700, 821, 1288
BmgT120I	GGNCC	5 cut(s)	90, 159, 244, 262, 1105
BmiI	GGNNCC	4 cut(s)	525, 1488, 2121, 2597
BmrFI	CCNGG	5 cut(s)	157, 239, 1711, 2238, 2481
BmrI	ACTGGG	2 cut(s)	951, 1473
BmsI	GCATC	4 cut(s)	379, 1012, 1677, 2547
BmtI	GCTAGC	1 cut(s)	2136
BmuI	ACTGGG	2 cut(s)	951, 1473
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	2 cut(s)	1265, 2138
Bpu14I	TTCGAA	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	233, 610
BpuMI	CCSGG	2 cut(s)	157, 239
BsaHI	GRCGYC	1 cut(s)	1393
BsaJI	CCNNGG	6 cut(s)	339, 1101, 1219, 1912, 2190, 2480
BsaWI	WCCGGW	4 cut(s)	209, 807, 1373, 1388
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 156, 2116, 2481
Bse118I	RCCGGY	1 cut(s)	1373
Bse1I	ACTGG	6 cut(s)	162, 946, 1072, 1468, 1632, 2451
Bse3DI	GCAATG	3 cut(s)	1065, 1833, 2457
BseAI	TCCGGA	1 cut(s)	1388
BseBI	CCWGG	3 cut(s)	1711, 2238, 2481
BseDI	CCNNGG	6 cut(s)	339, 1101, 1219, 1912, 2190, 2480
BseGI	GGATG	6 cut(s)	693, 1299, 1792, 1872, 2200, 2355
BseLI	CCNNNNNNNGG	4 cut(s)	129, 156, 2116, 2481
BseMI	GCAATG	3 cut(s)	1065, 1833, 2457
BseMII	CTCAG	2 cut(s)	408, 785
BseNI	ACTGG	6 cut(s)	162, 946, 1072, 1468, 1632, 2451
BseRI	GAGGAG	5 cut(s)	17, 740, 1109, 1764, 2456
BseSI	GKGCMC	2 cut(s)	1627, 2436
BseXI	GCAGC	8 cut(s)	439, 538, 1640, 1859, 2108, 2125, 2326, 2549
BseYI	CCCAGC	1 cut(s)	2285
BsgI	GTGCAG	2 cut(s)	537, 1911
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	6 cut(s)	254, 263, 1100, 1816, 2189, 2463
BshTI	ACCGGT	1 cut(s)	1373
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	1627
BsiHKCI	CYCGRG	3 cut(s)	700, 821, 1288
BsiSI	CCGG	6 cut(s)	157, 210, 239, 808, 1374, 1389
BslFI	GGGAC	2 cut(s)	2281, 2497
BslI	CCNNNNNNNGG	4 cut(s)	129, 156, 2116, 2481
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	2 cut(s)	2281, 2497
BsmI	GAATGC	2 cut(s)	1060, 1196
BsnI	GGCC	6 cut(s)	254, 263, 1100, 1816, 2189, 2463
BsoBI	CYCGRG	3 cut(s)	700, 821, 1288
Bsp119I	TTCGAA	1 cut(s)	566
Bsp1286I	GDGCHC	3 cut(s)	1627, 2124, 2436
Bsp13I	TCCGGA	1 cut(s)	1388
Bsp143I	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
Bsp19I	CCATGG	2 cut(s)	1219, 2190
BspACI	CCGC	5 cut(s)	124, 242, 1036, 1186, 2430
BspANI	GGCC	6 cut(s)	254, 263, 1100, 1816, 2189, 2463
BspCNI	CTCAG	2 cut(s)	409, 784
BspEI	TCCGGA	1 cut(s)	1388
BspHI	TCATGA	2 cut(s)	1396, 1515
BspLI	GGNNCC	4 cut(s)	525, 1488, 2121, 2597
BspMAI	CTGCAG	1 cut(s)	2115
BspMI	ACCTGC	2 cut(s)	1933, 2021
BspOI	GCTAGC	1 cut(s)	2136
BspPI	GGATC	4 cut(s)	140, 432, 1564, 2298
BspT104I	TTCGAA	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	1493
BsrBI	CCGCTC	1 cut(s)	1036
BsrDI	GCAATG	3 cut(s)	1065, 1833, 2457
BsrFI	RCCGGY	1 cut(s)	1373
BsrI	ACTGG	6 cut(s)	162, 946, 1072, 1468, 1632, 2451
BssAI	RCCGGY	1 cut(s)	1373
BssECI	CCNNGG	6 cut(s)	339, 1101, 1219, 1912, 2190, 2480
BssMI	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
BssNI	GRCGYC	1 cut(s)	1393
BssT1I	CCWWGG	3 cut(s)	1101, 1219, 2190
Bst2UI	CCWGG	3 cut(s)	1711, 2238, 2481
Bst4CI	ACNGT	4 cut(s)	340, 652, 768, 850
Bst6I	CTCTTC	2 cut(s)	1527, 1741
BstACI	GRCGYC	1 cut(s)	1393
BstAFI	CTTAAG	1 cut(s)	1493
BstAPI	GCANNNNNTGC	1 cut(s)	1844
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	7 cut(s)	483, 992, 1176, 1986, 2048, 2134, 2432
BstDEI	CTNAG	6 cut(s)	417, 678, 771, 1762, 2016, 2510
BstDSI	CCRYGG	4 cut(s)	339, 1219, 1912, 2190
BstF5I	GGATG	6 cut(s)	693, 1299, 1792, 1872, 2200, 2355
BstH2I	RGCGCY	1 cut(s)	2058
BstHHI	GCGC	1 cut(s)	2057
BstKTI	GATC	7 cut(s)	135, 427, 1371, 1572, 1707, 2293, 2574
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
BstMCI	CGRYCG	1 cut(s)	503
BstNI	CCWGG	3 cut(s)	1711, 2238, 2481
BstNSI	RCATGY	5 cut(s)	873, 979, 1182, 1285, 1639
BstSCI	CCNGG	5 cut(s)	155, 237, 1709, 2236, 2479
BstSFI	CTRYAG	2 cut(s)	1614, 2111
BstSLI	GKGCMC	2 cut(s)	1627, 2436
BstV1I	GCAGC	8 cut(s)	439, 538, 1640, 1859, 2108, 2125, 2326, 2549
BstX2I	RGATCY	2 cut(s)	1569, 2290
BstYI	RGATCY	2 cut(s)	1569, 2290
BsuI	GTATCC	3 cut(s)	311, 689, 1226
BsuRI	GGCC	6 cut(s)	254, 263, 1100, 1816, 2189, 2463
BtgI	CCRYGG	4 cut(s)	339, 1219, 1912, 2190
BtsCI	GGATG	6 cut(s)	693, 1299, 1792, 1872, 2200, 2355
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	3 cut(s)	764, 967, 1625
BveI	ACCTGC	2 cut(s)	1933, 2021
Cac8I	GCNNGC	7 cut(s)	483, 992, 1176, 1986, 2048, 2134, 2432
CaiI	CAGNNNCTG	1 cut(s)	1243
CciI	TCATGA	2 cut(s)	1396, 1515
CfoI	GCGC	1 cut(s)	2057
Cfr10I	RCCGGY	1 cut(s)	1373
Cfr13I	GGNCC	5 cut(s)	90, 159, 244, 262, 1105
CseI	GACGC	1 cut(s)	1412
CsiI	ACCWGGT	1 cut(s)	2236
Csp6I	GTAC	4 cut(s)	190, 1285, 1461, 2387
CspAI	ACCGGT	1 cut(s)	1373
CviQI	GTAC	4 cut(s)	190, 1285, 1461, 2387
DdeI	CTNAG	6 cut(s)	417, 678, 771, 1762, 2016, 2510
DpnI	GATC	7 cut(s)	134, 426, 1370, 1571, 1706, 2292, 2573
DpnII	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
DraIII	CACNNNGTG	1 cut(s)	2309
Eam1104I	CTCTTC	2 cut(s)	1527, 1741
EarI	CTCTTC	2 cut(s)	1527, 1741
Eco130I	CCWWGG	3 cut(s)	1101, 1219, 2190
Eco147I	AGGCCT	2 cut(s)	1100, 1816
Eco24I	GRGCYC	1 cut(s)	2124
Eco47I	GGWCC	4 cut(s)	90, 159, 244, 1105
Eco88I	CYCGRG	3 cut(s)	700, 821, 1288
EcoRI	GAATTC	3 cut(s)	439, 946, 1766
EcoRII	CCWGG	3 cut(s)	1709, 2236, 2479
EcoT14I	CCWWGG	3 cut(s)	1101, 1219, 2190
EcoT22I	ATGCAT	2 cut(s)	922, 1743
EcoT38I	GRGCYC	1 cut(s)	2124
ErhI	CCWWGG	3 cut(s)	1101, 1219, 2190
FaqI	GGGAC	2 cut(s)	2281, 2497
FauI	CCCGC	2 cut(s)	131, 2423
FauNDI	CATATG	1 cut(s)	1990
FbaI	TGATCA	2 cut(s)	1368, 1704
FblI	GTMKAC	1 cut(s)	2062
Fnu4HI	GCNGC	8 cut(s)	453, 552, 1654, 1848, 2097, 2114, 2315, 2538
FokI	GGATG	6 cut(s)	700, 1306, 1799, 1879, 2207, 2362
FriOI	GRGCYC	1 cut(s)	2124
Fsp4HI	GCNGC	8 cut(s)	453, 552, 1654, 1848, 2097, 2114, 2315, 2538
FspBI	CTAG	5 cut(s)	528, 1530, 1604, 1668, 2133
GlaI	GCGC	1 cut(s)	2056
GluI	GCNGC	8 cut(s)	453, 552, 1654, 1848, 2097, 2114, 2315, 2538
GsaI	CCCAGC	1 cut(s)	2289
GsuI	CTGGAG	2 cut(s)	1265, 2138
HaeII	RGCGCY	1 cut(s)	2058
HaeIII	GGCC	6 cut(s)	254, 263, 1100, 1816, 2189, 2463
HapII	CCGG	6 cut(s)	157, 210, 239, 808, 1374, 1389
HgaI	GACGC	1 cut(s)	1412
HhaI	GCGC	1 cut(s)	2057
Hin1I	GRCGYC	1 cut(s)	1393
Hin6I	GCGC	1 cut(s)	2055
HinP1I	GCGC	1 cut(s)	2055
HincII	GTYRAC	4 cut(s)	939, 973, 1633, 2063
HindII	GTYRAC	4 cut(s)	939, 973, 1633, 2063
HinfI	GANTC	7 cut(s)	119, 323, 635, 817, 1240, 1519, 2514
HpaI	GTTAAC	1 cut(s)	939
HpaII	CCGG	6 cut(s)	157, 210, 239, 808, 1374, 1389
HphI	GGTGA	6 cut(s)	328, 556, 856, 1363, 1699, 2060
Hpy166II	GTNNAC	9 cut(s)	537, 648, 764, 939, 973, 1625, 1633, 2063, 2387
Hpy188I	TCNGA	7 cut(s)	118, 514, 774, 1315, 1686, 1884, 2344
Hpy8I	GTNNAC	9 cut(s)	537, 648, 764, 939, 973, 1625, 1633, 2063, 2387
HpyCH4III	ACNGT	4 cut(s)	340, 652, 768, 850
HpyCH4IV	ACGT	3 cut(s)	188, 644, 1393
HpyF3I	CTNAG	6 cut(s)	417, 678, 771, 1762, 2016, 2510
HpySE526I	ACGT	3 cut(s)	188, 644, 1393
Hsp92I	GRCGYC	1 cut(s)	1393
HspAI	GCGC	1 cut(s)	2055
Kpn2I	TCCGGA	1 cut(s)	1388
Ksp22I	TGATCA	2 cut(s)	1368, 1704
KspAI	GTTAAC	1 cut(s)	939
Kzo9I	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
LmnI	GCTCC	7 cut(s)	152, 478, 523, 1033, 1981, 2119, 2322
Lsp1109I	GCAGC	8 cut(s)	439, 538, 1640, 1859, 2108, 2125, 2326, 2549
LweI	GCATC	4 cut(s)	379, 1012, 1677, 2547
MabI	ACCWGGT	1 cut(s)	2236
MaeI	CTAG	5 cut(s)	528, 1530, 1604, 1668, 2133
MaeII	ACGT	3 cut(s)	188, 644, 1393
MaeIII	GTNAC	7 cut(s)	164, 256, 334, 731, 844, 1027, 1825
MalI	GATC	7 cut(s)	134, 426, 1370, 1571, 1706, 2292, 2573
MbiI	CCGCTC	1 cut(s)	1036
MboI	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
MflI	RGATCY	2 cut(s)	1569, 2290
MhlI	GDGCHC	3 cut(s)	1627, 2124, 2436
MlyI	GAGTC	5 cut(s)	332, 644, 1249, 1513, 2523
MmeI	TCCRAC	3 cut(s)	91, 870, 2228
Mph1103I	ATGCAT	2 cut(s)	922, 1743
MroI	TCCGGA	1 cut(s)	1388
MroXI	GAANNNNTTC	2 cut(s)	1889, 2620
MseI	TTAA	7 cut(s)	938, 1326, 1410, 1494, 1680, 1694, 2579
MslI	CAYNNNNRTG	6 cut(s)	197, 300, 915, 1157, 1578, 2073
MspA1I	CMGCKG	1 cut(s)	2116
MspCI	CTTAAG	1 cut(s)	1493
MspI	CCGG	6 cut(s)	157, 210, 239, 808, 1374, 1389
MspR9I	CCNGG	5 cut(s)	157, 239, 1711, 2238, 2481
Mva1269I	GAATGC	2 cut(s)	1060, 1196
MvaI	CCWGG	3 cut(s)	1711, 2238, 2481
NciI	CCSGG	2 cut(s)	157, 239
NcoI	CCATGG	2 cut(s)	1219, 2190
NdeI	CATATG	1 cut(s)	1990
NdeII	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
NheI	GCTAGC	1 cut(s)	2132
NlaIV	GGNNCC	4 cut(s)	525, 1488, 2121, 2597
NmuCI	GTSAC	6 cut(s)	164, 256, 334, 731, 844, 1027
NsiI	ATGCAT	2 cut(s)	922, 1743
NspI	RCATGY	5 cut(s)	873, 979, 1182, 1285, 1639
NspV	TTCGAA	1 cut(s)	566
PaeR7I	CTCGAG	3 cut(s)	700, 821, 1288
PagI	TCATGA	2 cut(s)	1396, 1515
PaqCI	CACCTGC	1 cut(s)	2021
PceI	AGGCCT	2 cut(s)	1100, 1816
PciI	ACATGT	3 cut(s)	975, 1281, 1635
PctI	GAATGC	2 cut(s)	1060, 1196
PdmI	GAANNNNTTC	2 cut(s)	1889, 2620
PfeI	GAWTC	2 cut(s)	119, 817
PinAI	ACCGGT	1 cut(s)	1373
PkrI	GCNGC	8 cut(s)	454, 553, 1655, 1849, 2098, 2115, 2316, 2539
PleI	GAGTC	5 cut(s)	331, 643, 1248, 1513, 2522
PpsI	GAGTC	5 cut(s)	331, 643, 1248, 1513, 2522
PscI	ACATGT	3 cut(s)	975, 1281, 1635
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	3 cut(s)	1709, 2236, 2479
PspFI	CCCAGC	1 cut(s)	2285
PspGI	CCWGG	3 cut(s)	1709, 2236, 2479
PspN4I	GGNNCC	4 cut(s)	525, 1488, 2121, 2597
PspPI	GGNCC	5 cut(s)	90, 159, 244, 262, 1105
PspXI	VCTCGAGB	1 cut(s)	1288
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PstI	CTGCAG	1 cut(s)	2115
PstNI	CAGNNNCTG	1 cut(s)	1243
PsuI	RGATCY	2 cut(s)	1569, 2290
PvuII	CAGCTG	1 cut(s)	2116
RsaI	GTAC	4 cut(s)	191, 1286, 1462, 2388
RsaNI	GTAC	4 cut(s)	190, 1285, 1461, 2387
RseI	CAYNNNNRTG	6 cut(s)	197, 300, 915, 1157, 1578, 2073
SalI	GTCGAC	1 cut(s)	2061
SaqAI	TTAA	7 cut(s)	938, 1326, 1410, 1494, 1680, 1694, 2579
SatI	GCNGC	8 cut(s)	453, 552, 1654, 1848, 2097, 2114, 2315, 2538
Sau3AI	GATC	7 cut(s)	132, 424, 1368, 1569, 1704, 2290, 2571
Sau96I	GGNCC	5 cut(s)	90, 159, 244, 262, 1105
SchI	GAGTC	5 cut(s)	332, 644, 1249, 1513, 2523
ScrFI	CCNGG	5 cut(s)	157, 239, 1711, 2238, 2481
SduI	GDGCHC	3 cut(s)	1627, 2124, 2436
SexAI	ACCWGGT	1 cut(s)	2236
SfaNI	GCATC	4 cut(s)	379, 1012, 1677, 2547
SfcI	CTRYAG	2 cut(s)	1614, 2111
SfiI	GGCCNNNNNGGCC	1 cut(s)	260
Sfr274I	CTCGAG	3 cut(s)	700, 821, 1288
SfuI	TTCGAA	1 cut(s)	566
SinI	GGWCC	4 cut(s)	90, 159, 244, 1105
SlaI	CTCGAG	3 cut(s)	700, 821, 1288
SmiMI	CAYNNNNRTG	6 cut(s)	197, 300, 915, 1157, 1578, 2073
SmlI	CTYRAG	6 cut(s)	248, 589, 700, 821, 1288, 1493
SmoI	CTYRAG	6 cut(s)	248, 589, 700, 821, 1288, 1493
SseBI	AGGCCT	2 cut(s)	1100, 1816
SsiI	CCGC	5 cut(s)	124, 242, 1036, 1186, 2430
SspMI	CTAG	5 cut(s)	528, 1530, 1604, 1668, 2133
StuI	AGGCCT	2 cut(s)	1100, 1816
StyD4I	CCNGG	5 cut(s)	155, 237, 1709, 2236, 2479
StyI	CCWWGG	3 cut(s)	1101, 1219, 2190
TaaI	ACNGT	4 cut(s)	340, 652, 768, 850
TaiI	ACGT	3 cut(s)	191, 647, 1396
TaqII	GACCGA	1 cut(s)	489
TatI	WGTACW	2 cut(s)	1284, 2386
TfiI	GAWTC	2 cut(s)	119, 817
Tru1I	TTAA	7 cut(s)	938, 1326, 1410, 1494, 1680, 1694, 2579
Tru9I	TTAA	7 cut(s)	938, 1326, 1410, 1494, 1680, 1694, 2579
TscAI	CASTG	3 cut(s)	771, 967, 1632
TseFI	GTSAC	6 cut(s)	164, 256, 334, 731, 844, 1027
TseI	GCWGC	8 cut(s)	452, 551, 1653, 1847, 2096, 2113, 2314, 2537
Tsp45I	GTSAC	6 cut(s)	164, 256, 334, 731, 844, 1027
TspGWI	ACGGA	2 cut(s)	1046, 2189
TspRI	CASTG	3 cut(s)	771, 967, 1632
Vha464I	CTTAAG	1 cut(s)	1493
VneI	GTGCAC	1 cut(s)	1623
VpaK11BI	GGWCC	4 cut(s)	90, 159, 244, 1105
XapI	RAATTY	8 cut(s)	311, 439, 568, 906, 946, 1308, 1425, 1766
XbaI	TCTAGA	1 cut(s)	1667
XceI	RCATGY	5 cut(s)	873, 979, 1182, 1285, 1639
XhoI	CTCGAG	3 cut(s)	700, 821, 1288
XmiI	GTMKAC	1 cut(s)	2062
XmnI	GAANNNNTTC	2 cut(s)	1889, 2620
XspI	CTAG	5 cut(s)	528, 1530, 1604, 1668, 2133
ZraI	GACGTC	1 cut(s)	1394
Zsp2I	ATGCAT	2 cut(s)	922, 1743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.