Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Forward (+)

16925648 .. 16928465

Gene Structure 2818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGTCCTCCTCCTCCTTTGCCCACCTCCTCTCCAAACCTTTACACACATTTTCTTCCCTCCAAATCCAACAACCCACATCTCCCAAAAGGACCACTCCACCCCCCAACTCCTCTCTTCTCAACCACCCTATCACCACCACCTCCCCACCACCCAAACCCATCTCCGATTCCCGCACATGGATCGACACCATTCGCTCCCAAACCCGGTCCGGTCACTACAAAGAAGCTATCTCAACCTACATCGAAATGACCCGTTCCGGTATCGAACCCGACAACTTTGCCTTCCCGGCGGTCCTCAAGGCCGTCACGGCCCTTCAAGACTTGAACTTGGGGAAGCAGATACACGCCCATGTTGTCAAATTTGGATACGAGTCATCTTCTGTCACCGTGGCGAATACTCTTGTCAATGTGTATGGGAAATGCGGTGATATTGGAGATGCGTATAAGGTGTTTGATGGAATGACCGAGAGGGATCAAGTTTCTTGGAATTCCATGATTGCTGCTTTGTGCAGGTTTGAGGAATGGGAGCTGGCTTTGGACGCGTTTAGGTCGATGTTTTCGGATAATGTGGAGCCTAGCTCGTTTACTTTGGTGAGTGCTGCACTTGCTTGTTCTAATTTGGATAGGTGTGATGGCTTGAGGCTTGGGAAGCAAGTTCATGCGTATAGTATAAGAATGTGTGAGTCGAAAACTTTTACTGTCAATGCTTTGATGTCTATGTATGCTAAGTTGGGGATGGTGGGATACTCGAGAGGTGTGTTTGAGTTGTTTGAGGAGTGTGACTTGGTTTCGTGGAACACCATGATAAGTTCACTGTCTCAGAATGACCGGTTTGTGGAGGCATTAGAGTTCTTCCGGTTGATGATTCTCGAAGGAATTAGACCAGATGGGGTGACGGTTGCGAGTGTTCTTCCTGCCTGTTCTCATTTGGAGATGTTGGAGGCAGGGAAGGAAATTCATGCTTATGCATTGAGAGCCAATGAGTTTACTGGGAATTCTTATGTGGGCAGTGCTTTAGTTGACATGTATTGCAACTGCCGGCAAGTTGAAAGTGGTCGTCGAGTTTTTAATGCTGTCACGGAGCGGAGAGTTCCACTTTGGAATGCAATGATTACTGGTTATGCACAAAACGAGTATGATGAGGAGGCCTTGGACCTGTTCCTTGAAATGTATGGTGTGTCGGGACATAGTCCAAATGCCACCACAATGTCAAGTATTGTGCCAGCATGTGTGCGGTCTAAAGCATTCTTGGGGAAAGAAAGTATCCATGGTTTTGTAATAAAGCGGAATCTGGAGAAGAACAGGTACGTGCAAAATGCGCTTATGGACATGTACTCGAGGATGGGGAGAACAGAAATTTCAGAAACTATATTGAACAGCATGGAAGGAAAAGACATTGTATCATGGAACACCATGATCACCGGTTATGTTATTTCCGGACGTCATGATGACGCACTTAATCTGCTATATGAAATGCAAAGAGTAGAAGAAAACAAGAACACCAATGGTACTGGGTATGATAATGAAAGAAGGGTTCCCCTTAAGCCAAATACTATAACACTCATGACTCTTCTTCCTAGTTGTGCTGTATTATCAGCACTCGCTAAAGGGAAAGAGATCCATGCTTATGCTACTAGACATTTGTTGGCACTAGATATTGCTGTAGGTAGTGCACTGGTTGACATGTATGCTAAATGTGGCTGCTTAGATTTATCTAGAGCCATGTTTAATCAGATGCCGTTAAAGAATGTGATCACCTGGAATGTGCTTATCATGGCTTATGGTATGCATGGAAGAGGAGAGGAAGCCTTAGAACTCTTTAGGAATATGGTGGATGAAGGAAGATGGAATAAAGAGATAAGGCCTAATGAAGTTACATTCATTGCAATTTTTGCAGCTTGTAGTCATTCTGGGATGGTAGATGAAGGTCTGAACTTGTTCCACACAATGAAACAAGACCACGGCATTGAACCTGCACCAGACCATTATGCTTGTGTAGTGGATTTGCTTGGTCGGGCTGGTAGTGTGGAGCGAGCATATGAAATCATCAAAACCATGCCTTCTGAGTTTGATAAAGCAGAAAGGATGAAAAAGGAGGGTTATGTGCCTGATACTTCTTGTGTACTTCACAATGTTGATGAGGACGAGAAGGAAACTTTACTCTGTGGGCACAGCGAGAAACTGGCAATGGCTTTCGGCCTCCTCAATACCCGTCCAGGGACTACCATTAGAGTTGCCAAGAACCTTAGAGTCTGTAATGACTGCCACCTTGCAGCGAAATATATCTCAAAAATGCTGGACAGGGAGATCATTTTAAGAGATATTTGGTACCATGTCGAGCATAAGAAGTTGTCAGAATTTGCTGAGTTTTCGAAATGTCTTGAAGCTCTGAAGTATGAGGCACATAATGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

806

Amino Acids

90.2

Weight (kDa)

5.96

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	158 - 196	1e-07	PPR repeat family
PPR_2	PF13041	261 - 308	6.5e-08	PPR repeat family
PPR	PF01535	263 - 293	3.5e-07	PPR repeat
PPR_2	PF13041	366 - 411	4.8e-06	PPR repeat family
PPR_2	PF13041	464 - 494	3.1e-06	PPR repeat family
PPR	PF01535	467 - 494	7.7e-07	PPR repeat
PPR_2	PF13041	582 - 614	9.5e-07	PPR repeat family
PPR	PF01535	585 - 614	3e-08	PPR repeat
DYW_deaminase	PF14432	700 - 775	1.3e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1444
Acc36I	ACCTGC	2 cut(s)	501, 1981
Acc65I	GGTACC	1 cut(s)	2328
AccB1I	GGYRCC	1 cut(s)	2328
AccBSI	CCGCTC	1 cut(s)	1084
AccII	CGCG	1 cut(s)	542
AccIII	TCCGGA	1 cut(s)	1436
AciI	CCGC	6 cut(s)	172, 290, 423, 1084, 1234, 1285
AclWI	GGATC	3 cut(s)	188, 480, 1612
AcsI	RAATTY	6 cut(s)	359, 487, 954, 994, 1356, 2357
AcuI	CTGAAG	1 cut(s)	2411
AcyI	GRCGYC	1 cut(s)	1441
AfaI	GTAC	5 cut(s)	1307, 1334, 1510, 2124, 2330
AfiI	CCNNNNNNNGG	4 cut(s)	177, 204, 835, 2217
AflII	CTTAAG	1 cut(s)	1541
AflIII	ACRYGT	4 cut(s)	540, 1023, 1329, 1683
AgeI	ACCGGT	2 cut(s)	828, 1421
AgsI	TTSAA	7 cut(s)	317, 325, 1049, 1166, 1375, 1970, 2384
AjnI	CCWGG	2 cut(s)	1757, 2215
AluBI	AGCT	5 cut(s)	227, 529, 579, 1898, 2387
AluI	AGCT	5 cut(s)	227, 529, 579, 1898, 2387
Alw21I	GWGCWC	1 cut(s)	1675
Alw26I	GTCTC	1 cut(s)	822
Alw44I	GTGCAC	1 cut(s)	1671
AlwI	GGATC	3 cut(s)	188, 480, 1612
Ama87I	CYCGRG	2 cut(s)	748, 1336
Aor13HI	TCCGGA	1 cut(s)	1436
AoxI	GGCC	5 cut(s)	300, 309, 1146, 1862, 2197
ApaLI	GTGCAC	1 cut(s)	1671
ApeKI	GCWGC	5 cut(s)	500, 599, 1701, 1895, 2273
ApoI	RAATTY	6 cut(s)	359, 487, 954, 994, 1356, 2357
AsiGI	ACCGGT	2 cut(s)	828, 1421
Asp700I	GAANNNNTTC	1 cut(s)	1937
Asp718I	GGTACC	1 cut(s)	2328
AspLEI	GCGC	1 cut(s)	1321
AspS9I	GGNCC	5 cut(s)	90, 207, 292, 310, 1153
AsuC2I	CCSGG	2 cut(s)	205, 287
AsuHPI	GGTGA	7 cut(s)	124, 376, 437, 604, 904, 1411, 1747
AsuII	TTCGAA	1 cut(s)	2372
AvaI	CYCGRG	2 cut(s)	748, 1336
AvaII	GGWCC	4 cut(s)	90, 207, 292, 1153
BaeGI	GKGCMC	2 cut(s)	1675, 2172
BanI	GGYRCC	1 cut(s)	2328
BarI	GAAGNNNNNNTAC	2 cut(s)	1289, 1321
Bbv12I	GWGCWC	1 cut(s)	1675
BbvI	GCAGC	5 cut(s)	487, 586, 1688, 1907, 2285
BccI	CCATC	9 cut(s)	167, 449, 626, 730, 881, 1336, 1839, 1909, 2405
BceAI	ACGGC	4 cut(s)	287, 324, 1723, 1978
BcgI	CGANNNNNNTGC	4 cut(s)	163, 197, 260, 294
BciT130I	CCWGG	2 cut(s)	1759, 2217
BciVI	GTATCC	3 cut(s)	359, 737, 1274
BclI	TGATCA	2 cut(s)	1416, 1752
BcnI	CCSGG	2 cut(s)	205, 287
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	5 cut(s)	576, 1578, 1635, 1652, 1716
BfmI	CTRYAG	1 cut(s)	1662
BfrI	CTTAAG	1 cut(s)	1541
BfuAI	ACCTGC	2 cut(s)	501, 1981
BfuI	GTATCC	3 cut(s)	359, 737, 1274
BglI	GCCNNNNNGGC	2 cut(s)	287, 308
BisI	GCNGC	5 cut(s)	501, 600, 1702, 1896, 2274
BlsI	GCNGC	5 cut(s)	502, 601, 1703, 1897, 2275
Bme1390I	CCNGG	4 cut(s)	205, 287, 1759, 2217
Bme18I	GGWCC	4 cut(s)	90, 207, 292, 1153
BmeT110I	CYCGRG	2 cut(s)	748, 1336
BmgT120I	GGNCC	5 cut(s)	90, 207, 292, 310, 1153
BmiI	GGNNCC	3 cut(s)	573, 1536, 2330
BmrFI	CCNGG	4 cut(s)	205, 287, 1759, 2217
BmrI	ACTGGG	2 cut(s)	999, 1521
BmsI	GCATC	2 cut(s)	427, 1725
BmuI	ACTGGG	2 cut(s)	999, 1521
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	1313
Bpu14I	TTCGAA	1 cut(s)	2372
BpuEI	CTTGAG	2 cut(s)	281, 658
BpuMI	CCSGG	2 cut(s)	205, 287
BsaAI	YACGTR	1 cut(s)	1309
BsaHI	GRCGYC	1 cut(s)	1441
BsaJI	CCNNGG	5 cut(s)	387, 1149, 1267, 1960, 2216
BsaWI	WCCGGW	6 cut(s)	209, 257, 828, 855, 1421, 1436
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 204, 835, 2217
Bse118I	RCCGGY	3 cut(s)	828, 1038, 1421
Bse1I	ACTGG	5 cut(s)	994, 1120, 1516, 1680, 2187
Bse3DI	GCAATG	3 cut(s)	1113, 1881, 2193
BseAI	TCCGGA	1 cut(s)	1436
BseBI	CCWGG	2 cut(s)	1759, 2217
BseDI	CCNNGG	5 cut(s)	387, 1149, 1267, 1960, 2216
BseGI	GGATG	5 cut(s)	741, 1347, 1840, 1920, 2091
BseLI	CCNNNNNNNGG	4 cut(s)	177, 204, 835, 2217
BseMI	GCAATG	3 cut(s)	1113, 1881, 2193
BseMII	CTCAG	3 cut(s)	833, 2055, 2355
BseNI	ACTGG	5 cut(s)	994, 1120, 1516, 1680, 2187
BseRI	GAGGAG	6 cut(s)	17, 100, 788, 1157, 1812, 2192
BseSI	GKGCMC	2 cut(s)	1675, 2172
BseXI	GCAGC	5 cut(s)	487, 586, 1688, 1907, 2285
BsgI	GTGCAG	3 cut(s)	529, 585, 1959
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	5 cut(s)	302, 311, 1148, 1864, 2199
BshNI	GGYRCC	1 cut(s)	2328
BshTI	ACCGGT	2 cut(s)	828, 1421
BsiHKAI	GWGCWC	1 cut(s)	1675
BsiHKCI	CYCGRG	2 cut(s)	748, 1336
BsiSI	CCGG	9 cut(s)	205, 210, 258, 287, 829, 856, 1039, 1422, 1437
BslFI	GGGAC	2 cut(s)	1197, 2233
BslI	CCNNNNNNNGG	4 cut(s)	177, 204, 835, 2217
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	1197, 2233
BsmI	GAATGC	2 cut(s)	1108, 1244
BsnI	GGCC	5 cut(s)	302, 311, 1148, 1864, 2199
BsoBI	CYCGRG	2 cut(s)	748, 1336
Bsp119I	TTCGAA	1 cut(s)	2372
Bsp1286I	GDGCHC	2 cut(s)	1675, 2172
Bsp13I	TCCGGA	1 cut(s)	1436
Bsp143I	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
Bsp19I	CCATGG	1 cut(s)	1267
BspACI	CCGC	6 cut(s)	172, 290, 423, 1084, 1234, 1285
BspANI	GGCC	5 cut(s)	302, 311, 1148, 1864, 2199
BspCNI	CTCAG	3 cut(s)	832, 2056, 2356
BspEI	TCCGGA	1 cut(s)	1436
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	2 cut(s)	1444, 1563
BspLI	GGNNCC	3 cut(s)	573, 1536, 2330
BspMI	ACCTGC	2 cut(s)	501, 1981
BspPI	GGATC	3 cut(s)	188, 480, 1612
BspT104I	TTCGAA	1 cut(s)	2372
BspT107I	GGYRCC	1 cut(s)	2328
BspTI	CTTAAG	1 cut(s)	1541
BsrBI	CCGCTC	1 cut(s)	1084
BsrDI	GCAATG	3 cut(s)	1113, 1881, 2193
BsrFI	RCCGGY	3 cut(s)	828, 1038, 1421
BsrI	ACTGG	5 cut(s)	994, 1120, 1516, 1680, 2187
BssAI	RCCGGY	3 cut(s)	828, 1038, 1421
BssECI	CCNNGG	5 cut(s)	387, 1149, 1267, 1960, 2216
BssMI	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
BssNI	GRCGYC	1 cut(s)	1441
BssT1I	CCWWGG	2 cut(s)	1149, 1267
Bst2UI	CCWGG	2 cut(s)	1759, 2217
Bst4CI	ACNGT	4 cut(s)	388, 700, 816, 898
Bst6I	CTCTTC	3 cut(s)	120, 1575, 1789
BstACI	GRCGYC	1 cut(s)	1441
BstAFI	CTTAAG	1 cut(s)	1541
BstAPI	GCANNNNNTGC	1 cut(s)	1892
BstBAI	YACGTR	1 cut(s)	1309
BstBI	TTCGAA	1 cut(s)	2372
BstC8I	GCNNGC	4 cut(s)	531, 1040, 1224, 2034
BstDEI	CTNAG	7 cut(s)	726, 819, 1705, 1810, 2064, 2246, 2364
BstDSI	CCRYGG	3 cut(s)	387, 1267, 1960
BstF5I	GGATG	5 cut(s)	741, 1347, 1840, 1920, 2091
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	1321
BstKTI	GATC	6 cut(s)	183, 475, 1419, 1620, 1755, 2310
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 308, 539, 605, 649, 974, 1318, 1892
BstNI	CCWGG	2 cut(s)	1759, 2217
BstNSI	RCATGY	4 cut(s)	1027, 1230, 1333, 1687
BstSCI	CCNGG	4 cut(s)	203, 285, 1757, 2215
BstSFI	CTRYAG	1 cut(s)	1662
BstSLI	GKGCMC	2 cut(s)	1675, 2172
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	5 cut(s)	487, 586, 1688, 1907, 2285
BstX2I	RGATCY	1 cut(s)	1617
BstYI	RGATCY	1 cut(s)	1617
BsuI	GTATCC	3 cut(s)	359, 737, 1274
BsuRI	GGCC	5 cut(s)	302, 311, 1148, 1864, 2199
BtgI	CCRYGG	3 cut(s)	387, 1267, 1960
BtsCI	GGATG	5 cut(s)	741, 1347, 1840, 1920, 2091
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	3 cut(s)	812, 1015, 1673
BveI	ACCTGC	2 cut(s)	501, 1981
Cac8I	GCNNGC	4 cut(s)	531, 1040, 1224, 2034
CciI	TCATGA	2 cut(s)	1444, 1563
CfoI	GCGC	1 cut(s)	1321
Cfr10I	RCCGGY	3 cut(s)	828, 1038, 1421
Cfr13I	GGNCC	5 cut(s)	90, 207, 292, 310, 1153
CpoI	CGGWCCG	1 cut(s)	207
CseI	GACGC	2 cut(s)	548, 1460
Csp6I	GTAC	5 cut(s)	1306, 1333, 1509, 2123, 2329
CspAI	ACCGGT	2 cut(s)	828, 1421
CspI	CGGWCCG	1 cut(s)	207
CviQI	GTAC	5 cut(s)	1306, 1333, 1509, 2123, 2329
DdeI	CTNAG	7 cut(s)	726, 819, 1705, 1810, 2064, 2246, 2364
DpnI	GATC	6 cut(s)	182, 474, 1418, 1619, 1754, 2309
DpnII	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
Eam1104I	CTCTTC	3 cut(s)	120, 1575, 1789
EarI	CTCTTC	3 cut(s)	120, 1575, 1789
Eco130I	CCWWGG	2 cut(s)	1149, 1267
Eco147I	AGGCCT	2 cut(s)	1148, 1864
Eco47I	GGWCC	4 cut(s)	90, 207, 292, 1153
Eco57I	CTGAAG	1 cut(s)	2411
Eco88I	CYCGRG	2 cut(s)	748, 1336
EcoRI	GAATTC	2 cut(s)	487, 994
EcoRII	CCWGG	2 cut(s)	1757, 2215
EcoT14I	CCWWGG	2 cut(s)	1149, 1267
EcoT22I	ATGCAT	2 cut(s)	970, 1791
ErhI	CCWWGG	2 cut(s)	1149, 1267
FaqI	GGGAC	2 cut(s)	1197, 2233
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	2038
FbaI	TGATCA	2 cut(s)	1416, 1752
Fnu4HI	GCNGC	5 cut(s)	501, 600, 1702, 1896, 2274
FokI	GGATG	5 cut(s)	748, 1354, 1847, 1927, 2098
Fsp4HI	GCNGC	5 cut(s)	501, 600, 1702, 1896, 2274
FspBI	CTAG	5 cut(s)	576, 1578, 1635, 1652, 1716
GlaI	GCGC	1 cut(s)	1320
GluI	GCNGC	5 cut(s)	501, 600, 1702, 1896, 2274
GsuI	CTGGAG	1 cut(s)	1313
HaeIII	GGCC	5 cut(s)	302, 311, 1148, 1864, 2199
HapII	CCGG	9 cut(s)	205, 210, 258, 287, 829, 856, 1039, 1422, 1437
HgaI	GACGC	2 cut(s)	548, 1460
HhaI	GCGC	1 cut(s)	1321
Hin1I	GRCGYC	1 cut(s)	1441
Hin6I	GCGC	1 cut(s)	1319
HinP1I	GCGC	1 cut(s)	1319
HincII	GTYRAC	2 cut(s)	1021, 1681
HindII	GTYRAC	2 cut(s)	1021, 1681
HinfI	GANTC	7 cut(s)	167, 371, 683, 865, 1288, 1567, 2250
HpaII	CCGG	9 cut(s)	205, 210, 258, 287, 829, 856, 1039, 1422, 1437
HphI	GGTGA	7 cut(s)	124, 376, 437, 604, 904, 1411, 1747
Hpy166II	GTNNAC	7 cut(s)	585, 812, 987, 1021, 1673, 1681, 2123
Hpy188I	TCNGA	9 cut(s)	166, 562, 822, 1363, 1734, 1932, 2065, 2356, 2391
Hpy8I	GTNNAC	7 cut(s)	585, 812, 987, 1021, 1673, 1681, 2123
Hpy99I	CGWCG	1 cut(s)	1062
HpyCH4III	ACNGT	4 cut(s)	388, 700, 816, 898
HpyCH4IV	ACGT	2 cut(s)	1308, 1441
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 308, 539, 605, 649, 974, 1318, 1892
HpyF3I	CTNAG	7 cut(s)	726, 819, 1705, 1810, 2064, 2246, 2364
HpySE526I	ACGT	2 cut(s)	1308, 1441
Hsp92I	GRCGYC	1 cut(s)	1441
HspAI	GCGC	1 cut(s)	1319
Kpn2I	TCCGGA	1 cut(s)	1436
KpnI	GGTACC	1 cut(s)	2332
KroI	GCCGGC	1 cut(s)	1038
KroNI	GCCGGC	1 cut(s)	1040
Ksp22I	TGATCA	2 cut(s)	1416, 1752
Kzo9I	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
LmnI	GCTCC	5 cut(s)	200, 526, 571, 1081, 2029
Lsp1109I	GCAGC	5 cut(s)	487, 586, 1688, 1907, 2285
LweI	GCATC	2 cut(s)	427, 1725
MaeI	CTAG	5 cut(s)	576, 1578, 1635, 1652, 1716
MaeII	ACGT	2 cut(s)	1308, 1441
MaeIII	GTNAC	7 cut(s)	212, 304, 382, 779, 892, 1075, 1873
MalI	GATC	6 cut(s)	182, 474, 1418, 1619, 1754, 2309
MbiI	CCGCTC	1 cut(s)	1084
MboI	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
MflI	RGATCY	1 cut(s)	1617
MhlI	GDGCHC	2 cut(s)	1675, 2172
MluCI	AATT	9 cut(s)	359, 487, 616, 876, 954, 994, 1356, 1887, 2357
MluI	ACGCGT	1 cut(s)	540
MlyI	GAGTC	4 cut(s)	380, 692, 1561, 2259
MmeI	TCCRAC	2 cut(s)	91, 918
Mph1103I	ATGCAT	2 cut(s)	970, 1791
MroI	TCCGGA	1 cut(s)	1436
MroNI	GCCGGC	1 cut(s)	1038
MroXI	GAANNNNTTC	1 cut(s)	1937
MseI	TTAA	6 cut(s)	1068, 1458, 1542, 1728, 1742, 2315
MslI	CAYNNNNRTG	6 cut(s)	245, 348, 963, 1205, 1626, 2409
MspCI	CTTAAG	1 cut(s)	1541
MspI	CCGG	9 cut(s)	205, 210, 258, 287, 829, 856, 1039, 1422, 1437
MspR9I	CCNGG	4 cut(s)	205, 287, 1759, 2217
Mva1269I	GAATGC	2 cut(s)	1108, 1244
MvaI	CCWGG	2 cut(s)	1759, 2217
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	8 cut(s)	287, 308, 539, 605, 649, 974, 1318, 1892
NaeI	GCCGGC	1 cut(s)	1040
NciI	CCSGG	2 cut(s)	205, 287
NcoI	CCATGG	1 cut(s)	1267
NdeI	CATATG	1 cut(s)	2038
NdeII	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
NgoMIV	GCCGGC	1 cut(s)	1038
NlaIV	GGNNCC	3 cut(s)	573, 1536, 2330
NmuCI	GTSAC	6 cut(s)	212, 304, 382, 779, 892, 1075
NsiI	ATGCAT	2 cut(s)	970, 1791
NspI	RCATGY	4 cut(s)	1027, 1230, 1333, 1687
NspV	TTCGAA	1 cut(s)	2372
PaeR7I	CTCGAG	2 cut(s)	748, 1336
PagI	TCATGA	2 cut(s)	1444, 1563
PceI	AGGCCT	2 cut(s)	1148, 1864
PciI	ACATGT	3 cut(s)	1023, 1329, 1683
PctI	GAATGC	2 cut(s)	1108, 1244
PdiI	GCCGGC	1 cut(s)	1040
PdmI	GAANNNNTTC	1 cut(s)	1937
PfeI	GAWTC	3 cut(s)	167, 865, 1288
PflFI	GACNNNGTC	1 cut(s)	1188
PinAI	ACCGGT	2 cut(s)	828, 1421
PkrI	GCNGC	5 cut(s)	502, 601, 1703, 1897, 2275
PleI	GAGTC	4 cut(s)	379, 691, 1561, 2258
PpsI	GAGTC	4 cut(s)	379, 691, 1561, 2258
Ppu21I	YACGTR	1 cut(s)	1309
PscI	ACATGT	3 cut(s)	1023, 1329, 1683
Psp6I	CCWGG	2 cut(s)	1757, 2215
PspGI	CCWGG	2 cut(s)	1757, 2215
PspN4I	GGNNCC	3 cut(s)	573, 1536, 2330
PspPI	GGNCC	5 cut(s)	90, 207, 292, 310, 1153
PspXI	VCTCGAGB	1 cut(s)	1336
PsuI	RGATCY	1 cut(s)	1617
PsyI	GACNNNGTC	1 cut(s)	1188
RsaI	GTAC	5 cut(s)	1307, 1334, 1510, 2124, 2330
RsaNI	GTAC	5 cut(s)	1306, 1333, 1509, 2123, 2329
RseI	CAYNNNNRTG	6 cut(s)	245, 348, 963, 1205, 1626, 2409
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SaqAI	TTAA	6 cut(s)	1068, 1458, 1542, 1728, 1742, 2315
SatI	GCNGC	5 cut(s)	501, 600, 1702, 1896, 2274
Sau3AI	GATC	6 cut(s)	180, 472, 1416, 1617, 1752, 2307
Sau96I	GGNCC	5 cut(s)	90, 207, 292, 310, 1153
SchI	GAGTC	4 cut(s)	380, 692, 1561, 2259
ScrFI	CCNGG	4 cut(s)	205, 287, 1759, 2217
SduI	GDGCHC	2 cut(s)	1675, 2172
SfaNI	GCATC	2 cut(s)	427, 1725
SfcI	CTRYAG	1 cut(s)	1662
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
Sfr274I	CTCGAG	2 cut(s)	748, 1336
SfuI	TTCGAA	1 cut(s)	2372
SinI	GGWCC	4 cut(s)	90, 207, 292, 1153
SlaI	CTCGAG	2 cut(s)	748, 1336
SmiMI	CAYNNNNRTG	6 cut(s)	245, 348, 963, 1205, 1626, 2409
SmlI	CTYRAG	5 cut(s)	296, 637, 748, 1336, 1541
SmoI	CTYRAG	5 cut(s)	296, 637, 748, 1336, 1541
Sse9I	AATT	9 cut(s)	359, 487, 616, 876, 954, 994, 1356, 1887, 2357
SseBI	AGGCCT	2 cut(s)	1148, 1864
SsiI	CCGC	6 cut(s)	172, 290, 423, 1084, 1234, 1285
SspMI	CTAG	5 cut(s)	576, 1578, 1635, 1652, 1716
StuI	AGGCCT	2 cut(s)	1148, 1864
StyD4I	CCNGG	4 cut(s)	203, 285, 1757, 2215
StyI	CCWWGG	2 cut(s)	1149, 1267
TaaI	ACNGT	4 cut(s)	388, 700, 816, 898
TaiI	ACGT	2 cut(s)	1311, 1444
TaqII	GACCGA	1 cut(s)	479
TasI	AATT	9 cut(s)	359, 487, 616, 876, 954, 994, 1356, 1887, 2357
TatI	WGTACW	2 cut(s)	1332, 2122
TfiI	GAWTC	3 cut(s)	167, 865, 1288
Tru1I	TTAA	6 cut(s)	1068, 1458, 1542, 1728, 1742, 2315
Tru9I	TTAA	6 cut(s)	1068, 1458, 1542, 1728, 1742, 2315
TscAI	CASTG	3 cut(s)	819, 1015, 1680
TseFI	GTSAC	6 cut(s)	212, 304, 382, 779, 892, 1075
TseI	GCWGC	5 cut(s)	500, 599, 1701, 1895, 2273
Tsp45I	GTSAC	6 cut(s)	212, 304, 382, 779, 892, 1075
TspGWI	ACGGA	1 cut(s)	1094
TspRI	CASTG	3 cut(s)	819, 1015, 1680
Tth111I	GACNNNGTC	1 cut(s)	1188
Vha464I	CTTAAG	1 cut(s)	1541
VneI	GTGCAC	1 cut(s)	1671
VpaK11BI	GGWCC	4 cut(s)	90, 207, 292, 1153
XapI	RAATTY	6 cut(s)	359, 487, 954, 994, 1356, 2357
XbaI	TCTAGA	1 cut(s)	1715
XceI	RCATGY	4 cut(s)	1027, 1230, 1333, 1687
XhoI	CTCGAG	2 cut(s)	748, 1336
XmnI	GAANNNNTTC	1 cut(s)	1937
XspI	CTAG	5 cut(s)	576, 1578, 1635, 1652, 1716
ZraI	GACGTC	1 cut(s)	1442
Zsp2I	ATGCAT	2 cut(s)	970, 1791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.