Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016717

Physical Location & Seq

Genomic Coordinates Forward (+)

15870970 .. 15873912

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGTCCTCCTCCTTCTCTGCCCATCTCCTCTCCAAACCTCTACACACATTTTCTTCCCTCCAAATCCAACAACCCACATCTCCCAAAAGGACCATTCCACCCCCCAACTCCTCTCTTCTCAACCACCCCATCTCCGATTCCCGCTCATGGATCGACACCATTCGCTCCCAAACCCGGTCCGGTCACTACAAAGAAGCCATCTCAACCTACATCGAAATGACCCGTTCCGGTATCGAACCCGACAACTTTGCCTTCCCGGCGGTCCTCAAGGCCGTCACGGCCCTTCAAGACTTGAACTTGGGGAAGCAGATACACGCCCATGTTGTCAAATTTGGATATGAGTCATCTTCTGTCACCGTGGCGAATACTCTTGTCAATGTGTATGGGAAATGTGGCGATATTGGGGATGCGTATAAGGTGTTTGATGGAATGACTGAGAGGGATCAAGTTTCTTGGAATTCCATGATTGCTGCTTTGTGTAGGTTTGAGGAATGGGAGCTGGCTTTGGAGGCGTTTAGGTCCATGTTTTCGGATAATGTGGAGCCTAGCTCGTTTACTTTGGTGAGTGCTGCACTTGCTTGTTCGAATTTGGATAGGTGTGATGGCTTGAGGCTCGGGAAGCAAGTTCATGCGTATAGTATAAGAATGTGTGAGTCGAAAACTTTTACTGTCAATGCTTTGATGTCTATGTATGCTAAGTTGGGGATGGTGGGATACTCGAGAGGTGTGTTTGAGTTGTTTGAGGAGTGTGACCTGGTTTCGTGGAACACCATGATAAGTTCACTGTCTCAGAATGACCGGTTTGTGGAGGCATTAGAGTTCTTCCGGTTGATGGTTCTAGAGGGAATTAAACCCGATGGGGTGACGGTTGCGAGTGTTCTTCCTGCCTGTTCTCATTTGGAGATGTTGGAGGCAGGGAAGGAAATTCATGCTTATGCATTGAGAGCCAATGAGTTAACTGGGAATTCTTATGTGGGCAGTGCTTTAGTTGACATGTATTGTAACTGCCGGCAAGTTGAAAGTGGTCGTAGAGTTTTTAATGCTGTCACGGAGCGGAGAGTTCCACTTTGGAATGCAATGATTACTGGTTACGCACAAAATGAGTATGATGAGGAGGCCTTGGACCTGTTCCTTGAAATGTATGCTGTGTCGGGGCATAGTCCAAATGCCACCACAATGTCGAGTATTGTGCCAGCATGTGTGCGGTCTGAAGCATTCTTGGGGAAAGAAAGTATCCATGGTTTTGTAATAAAGCGGAGTCTGGAGAAGAACAGGTATGTGCAAAATGCACTTATGGACATGTACTCGAGGATGGGGAGAACAGAAATTTCAGAAACTATATTTAACAGCATGGAAGGAAAAGACATTGTATCATGGAACACCATGATCACCGGTTATGTTATTTCCGGACGTCATGATGACGCACTTAATCTGCTATATGAAATGCAAAGAGTAGAAGAAAACAAGAACACCAATGGTACTGGTTATGATAGTGAAAGAAGGGTTCCCCTTAAGCCGAATACTATAACACTCATGACTCTTCTTCCTAGTTGTGCTGTATTATCAGCACTCGCTAAAGGGAAAGAGATCCATGCTTATGCTACTAGACATTTGTTGGCACTAGATATTGCTGTAGGTAGTGCACTGGTTGACATGTATGCTAAATGTGGCTGCTTAGATTTATCTAGAGCCATGTTTAATCAGATGCCGTTAAAGAATGTGATCACCTGGAATGTGCTTATCATGGCTTATGGTATGCATGGAAGAGGAGAGGAAGCCTTAAAACTCTTTAGGAATATGGTGGATGAAGGAAGATGGAATAAAGAGATAAGGCCTAATGAAGTTACATTCATTGCAATTTTTGCAGCTTGTAGTCATTCTGGGATGGTAGATGAAGGTCTGAACTTGTTCCACACAATGAAACAAGACCACGGCATTGAACCTGCACCAGACCATTATGCTTGTGTTGTGGATTTGCTTGGTCGGGCTGGTAGTGTGGAGCGAGCATATGAAATCATCAAAACCATGCCTTCTGAGTTTGATAAAGCAGGTGCCTGGAGTAGCTTGCTTGGTGCTTGTCGACTCCACCAGAATGTAGAGATTGGAGAAATTGCAGCTAATCATCTCCTGCAGCTGGAGCCTGATGTGGCTAGTCACTATGTTCTACTCTCTAATATCTACTCATCTTCTGGACTTTGGGAAAAGGCCATGGATCTCCGGAGAAAAATGAAGGAAATGGGAGTGAGAAAAGAGCCTGGTTGTAGTTGGATCGAGTTTGAAGATGAGGTTCATAAGTTTTTGGCTGGGGATCTGTCGCACCCACAAAGTGAGCAGCTCCATGAATATCTCGAAACCCTGTCAGAAAGGATGAAAAAGGAGGGTTATGTGCCTGATACTTCTTGTGTACTTCACAATGTTGATGAGGACGAGAAGGAAACTTTACTCTGTGGGCACAGCGAGAAACTGGCAATGGCTTTCGGCCTCCTCAATACCCGTCCAGGGACTACCATTAGAGTTGCCAAGAACCTTAGAGTCTGTAATGACTGCCACCTTGCAGCGAAATATATCTCAAAGATGCTGGACAGGGAGATCATTTTAAGAGATGTAAGAAGGTTCCATCATTTTAGAAATGGAAATTGTTCATGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

886

Amino Acids

99.43

Weight (kDa)

5.91

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	148 - 186	1.2e-07	PPR repeat family
PPR_2	PF13041	251 - 298	1.2e-08	PPR repeat family
PPR	PF01535	253 - 283	4.3e-07	PPR repeat
PPR_2	PF13041	356 - 401	3.4e-06	PPR repeat family
PPR_2	PF13041	454 - 484	3.5e-06	PPR repeat family
PPR	PF01535	457 - 484	8.6e-07	PPR repeat
PPR_2	PF13041	572 - 604	5.8e-07	PPR repeat family
PPR	PF01535	575 - 604	4.5e-08	PPR repeat
E_motif	PF20431	696 - 758	3.6e-21	E motif
Eplus_motif	PF20430	763 - 790	8.1e-07	E+ motif
DYW_deaminase	PF14432	794 - 886	7.2e-45	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57430
fragaria_vesca	FvH4_3g13090
malus_domestica	MD10G1226400.v1.1
prunus_persica	Prupe.1G101200_v2.0.a1
pyrus_communis	pycom10g19030
rosa_chinensis	RchiOBHm_Chr5g0021321
rosa_laevigata	RLG00000032604
rosa_multiflora	Rmu_co8520529.1_g000003 Rmu_sc0003392.1_g000007 Rmu_sc0004847.1_g000016
rosa_rugosa	Rorug05G0066300
rosa_samantha	Rh5BG154900 Rh5CG168400
rosa_wichuraiana	Rw5G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2039
AatII	GACGTC	1 cut(s)	1414
Acc36I	ACCTGC	2 cut(s)	1951, 2039
AccB1I	GGYRCC	1 cut(s)	2051
AccBSI	CCGCTC	2 cut(s)	144, 1054
AccI	GTMKAC	1 cut(s)	2080
AccIII	TCCGGA	2 cut(s)	1406, 2217
AciI	CCGC	5 cut(s)	142, 260, 1054, 1204, 1255
AclWI	GGATC	6 cut(s)	158, 450, 1582, 2220, 2276, 2316
AcsI	RAATTY	6 cut(s)	329, 457, 586, 924, 964, 1326
AcuI	CTGAAG	1 cut(s)	1230
AcyI	GRCGYC	1 cut(s)	1411
AdeI	CACNNNGTG	1 cut(s)	2327
AfaI	GTAC	3 cut(s)	1304, 1480, 2406
AfiI	CCNNNNNNNGG	6 cut(s)	147, 174, 805, 832, 2134, 2499
AflII	CTTAAG	1 cut(s)	1511
AflIII	ACRYGT	3 cut(s)	993, 1299, 1653
AgeI	ACCGGT	2 cut(s)	798, 1391
AgsI	TTSAA	6 cut(s)	287, 295, 1019, 1136, 1940, 2279
AjnI	CCWGG	5 cut(s)	753, 1727, 2054, 2254, 2497
AluBI	AGCT	7 cut(s)	499, 549, 1868, 2064, 2117, 2134, 2335
AluI	AGCT	7 cut(s)	499, 549, 1868, 2064, 2117, 2134, 2335
Alw21I	GWGCWC	1 cut(s)	1645
Alw26I	GTCTC	1 cut(s)	792
Alw44I	GTGCAC	1 cut(s)	1641
AlwI	GGATC	6 cut(s)	158, 450, 1582, 2220, 2276, 2316
Ama87I	CYCGRG	3 cut(s)	614, 718, 1306
Aor13HI	TCCGGA	2 cut(s)	1406, 2217
AoxI	GGCC	6 cut(s)	270, 279, 1116, 1832, 2205, 2479
ApaLI	GTGCAC	1 cut(s)	1641
ApeKI	GCWGC	8 cut(s)	470, 569, 1671, 1865, 2114, 2131, 2332, 2555
ApoI	RAATTY	6 cut(s)	329, 457, 586, 924, 964, 1326
AsiGI	ACCGGT	2 cut(s)	798, 1391
Asp700I	GAANNNNTTC	2 cut(s)	1907, 2638
AspS9I	GGNCC	6 cut(s)	90, 177, 262, 280, 519, 1123
AsuC2I	CCSGG	2 cut(s)	175, 257
AsuHPI	GGTGA	5 cut(s)	346, 574, 874, 1381, 1717
AsuII	TTCGAA	1 cut(s)	584
AvaI	CYCGRG	3 cut(s)	614, 718, 1306
AvaII	GGWCC	5 cut(s)	90, 177, 262, 519, 1123
BaeGI	GKGCMC	2 cut(s)	1645, 2454
BanI	GGYRCC	1 cut(s)	2051
Bbv12I	GWGCWC	1 cut(s)	1645
BbvI	GCAGC	8 cut(s)	457, 556, 1658, 1877, 2126, 2143, 2344, 2567
BceAI	ACGGC	4 cut(s)	257, 294, 1693, 1948
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 1171, 1205
BciT130I	CCWGG	5 cut(s)	755, 1729, 2056, 2256, 2499
BciVI	GTATCC	2 cut(s)	707, 1244
BclI	TGATCA	2 cut(s)	1386, 1722
BcnI	CCSGG	2 cut(s)	175, 257
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	7 cut(s)	546, 839, 1548, 1605, 1622, 1686, 2151
BfmI	CTRYAG	2 cut(s)	1632, 2129
BfrI	CTTAAG	1 cut(s)	1511
BfuAI	ACCTGC	2 cut(s)	1951, 2039
BfuI	GTATCC	2 cut(s)	707, 1244
BglI	GCCNNNNNGGC	2 cut(s)	257, 278
BisI	GCNGC	8 cut(s)	471, 570, 1672, 1866, 2115, 2132, 2333, 2556
BlsI	GCNGC	8 cut(s)	472, 571, 1673, 1867, 2116, 2133, 2334, 2557
Bme1390I	CCNGG	7 cut(s)	175, 257, 755, 1729, 2056, 2256, 2499
Bme18I	GGWCC	5 cut(s)	90, 177, 262, 519, 1123
BmeT110I	CYCGRG	3 cut(s)	614, 718, 1306
BmgT120I	GGNCC	6 cut(s)	90, 177, 262, 280, 519, 1123
BmiI	GGNNCC	5 cut(s)	543, 1506, 2053, 2139, 2615
BmrFI	CCNGG	7 cut(s)	175, 257, 755, 1729, 2056, 2256, 2499
BmrI	ACTGGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	397, 1695, 2565
BmuI	ACTGGG	1 cut(s)	969
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	3 cut(s)	1283, 2077, 2156
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	2 cut(s)	251, 628
BpuMI	CCSGG	2 cut(s)	175, 257
BsaHI	GRCGYC	1 cut(s)	1411
BsaJI	CCNNGG	6 cut(s)	357, 1119, 1237, 1930, 2208, 2498
BsaWI	WCCGGW	7 cut(s)	179, 227, 798, 825, 1391, 1406, 2217
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	6 cut(s)	147, 174, 805, 832, 2134, 2499
Bse118I	RCCGGY	3 cut(s)	798, 1008, 1391
Bse1I	ACTGG	5 cut(s)	964, 1090, 1486, 1650, 2469
Bse3DI	GCAATG	3 cut(s)	1083, 1851, 2475
BseAI	TCCGGA	2 cut(s)	1406, 2217
BseBI	CCWGG	5 cut(s)	755, 1729, 2056, 2256, 2499
BseDI	CCNNGG	6 cut(s)	357, 1119, 1237, 1930, 2208, 2498
BseGI	GGATG	6 cut(s)	412, 711, 1317, 1810, 1890, 2373
BseLI	CCNNNNNNNGG	6 cut(s)	147, 174, 805, 832, 2134, 2499
BseMI	GCAATG	3 cut(s)	1083, 1851, 2475
BseMII	CTCAG	3 cut(s)	426, 803, 2025
BseNI	ACTGG	5 cut(s)	964, 1090, 1486, 1650, 2469
BseRI	GAGGAG	6 cut(s)	17, 100, 758, 1127, 1782, 2474
BseSI	GKGCMC	2 cut(s)	1645, 2454
BseXI	GCAGC	8 cut(s)	457, 556, 1658, 1877, 2126, 2143, 2344, 2567
BseYI	CCCAGC	1 cut(s)	2303
BsgI	GTGCAG	2 cut(s)	555, 1929
BshFI	GGCC	6 cut(s)	272, 281, 1118, 1834, 2207, 2481
BshNI	GGYRCC	1 cut(s)	2051
BshTI	ACCGGT	2 cut(s)	798, 1391
BsiHKAI	GWGCWC	1 cut(s)	1645
BsiHKCI	CYCGRG	3 cut(s)	614, 718, 1306
BslFI	GGGAC	1 cut(s)	2515
BslI	CCNNNNNNNGG	6 cut(s)	147, 174, 805, 832, 2134, 2499
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	2515
BsmI	GAATGC	2 cut(s)	1078, 1214
BsnI	GGCC	6 cut(s)	272, 281, 1118, 1834, 2207, 2481
BsoBI	CYCGRG	3 cut(s)	614, 718, 1306
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	1645, 2454
Bsp13I	TCCGGA	2 cut(s)	1406, 2217
Bsp143I	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
Bsp19I	CCATGG	2 cut(s)	1237, 2208
BspACI	CCGC	5 cut(s)	142, 260, 1054, 1204, 1255
BspANI	GGCC	6 cut(s)	272, 281, 1118, 1834, 2207, 2481
BspCNI	CTCAG	3 cut(s)	427, 802, 2026
BspEI	TCCGGA	2 cut(s)	1406, 2217
BspHI	TCATGA	2 cut(s)	1414, 1533
BspLI	GGNNCC	5 cut(s)	543, 1506, 2053, 2139, 2615
BspMAI	CTGCAG	1 cut(s)	2133
BspMI	ACCTGC	2 cut(s)	1951, 2039
BspPI	GGATC	6 cut(s)	158, 450, 1582, 2220, 2276, 2316
BspT104I	TTCGAA	1 cut(s)	584
BspT107I	GGYRCC	1 cut(s)	2051
BspTI	CTTAAG	1 cut(s)	1511
BsrBI	CCGCTC	2 cut(s)	144, 1054
BsrDI	GCAATG	3 cut(s)	1083, 1851, 2475
BsrFI	RCCGGY	3 cut(s)	798, 1008, 1391
BsrI	ACTGG	5 cut(s)	964, 1090, 1486, 1650, 2469
BssAI	RCCGGY	3 cut(s)	798, 1008, 1391
BssECI	CCNNGG	6 cut(s)	357, 1119, 1237, 1930, 2208, 2498
BssMI	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
BssNI	GRCGYC	1 cut(s)	1411
BssT1I	CCWWGG	3 cut(s)	1119, 1237, 2208
Bst2UI	CCWGG	5 cut(s)	755, 1729, 2056, 2256, 2499
Bst4CI	ACNGT	4 cut(s)	358, 670, 786, 868
Bst6I	CTCTTC	3 cut(s)	120, 1545, 1759
BstACI	GRCGYC	1 cut(s)	1411
BstAFI	CTTAAG	1 cut(s)	1511
BstAPI	GCANNNNNTGC	1 cut(s)	1862
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	5 cut(s)	501, 1010, 1194, 2004, 2066
BstDEI	CTNAG	6 cut(s)	435, 696, 789, 1675, 2034, 2528
BstDSI	CCRYGG	4 cut(s)	357, 1237, 1930, 2208
BstF5I	GGATG	6 cut(s)	412, 711, 1317, 1810, 1890, 2373
BstKTI	GATC	9 cut(s)	153, 445, 1389, 1590, 1725, 2215, 2271, 2311, 2592
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
BstMWI	GCNNNNNNNGC	8 cut(s)	257, 278, 509, 575, 619, 944, 1862, 2137
BstNI	CCWGG	5 cut(s)	755, 1729, 2056, 2256, 2499
BstNSI	RCATGY	4 cut(s)	997, 1200, 1303, 1657
BstSCI	CCNGG	7 cut(s)	173, 255, 753, 1727, 2054, 2254, 2497
BstSFI	CTRYAG	2 cut(s)	1632, 2129
BstSLI	GKGCMC	2 cut(s)	1645, 2454
BstV1I	GCAGC	8 cut(s)	457, 556, 1658, 1877, 2126, 2143, 2344, 2567
BstX2I	RGATCY	3 cut(s)	1587, 2212, 2308
BstYI	RGATCY	3 cut(s)	1587, 2212, 2308
BsuI	GTATCC	2 cut(s)	707, 1244
BsuRI	GGCC	6 cut(s)	272, 281, 1118, 1834, 2207, 2481
BtgI	CCRYGG	4 cut(s)	357, 1237, 1930, 2208
BtsCI	GGATG	6 cut(s)	412, 711, 1317, 1810, 1890, 2373
BtsI	GCAGTG	1 cut(s)	985
BtsIMutI	CAGTG	3 cut(s)	782, 985, 1643
BveI	ACCTGC	2 cut(s)	1951, 2039
Cac8I	GCNNGC	5 cut(s)	501, 1010, 1194, 2004, 2066
CciI	TCATGA	2 cut(s)	1414, 1533
Cfr10I	RCCGGY	3 cut(s)	798, 1008, 1391
Cfr13I	GGNCC	6 cut(s)	90, 177, 262, 280, 519, 1123
CpoI	CGGWCCG	1 cut(s)	177
CseI	GACGC	1 cut(s)	1430
CsiI	ACCWGGT	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	1303, 1479, 2405
CspAI	ACCGGT	2 cut(s)	798, 1391
CspI	CGGWCCG	1 cut(s)	177
CviQI	GTAC	3 cut(s)	1303, 1479, 2405
DdeI	CTNAG	6 cut(s)	435, 696, 789, 1675, 2034, 2528
DpnI	GATC	9 cut(s)	152, 444, 1388, 1589, 1724, 2214, 2270, 2310, 2591
DpnII	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
DraIII	CACNNNGTG	1 cut(s)	2327
Eam1104I	CTCTTC	3 cut(s)	120, 1545, 1759
EarI	CTCTTC	3 cut(s)	120, 1545, 1759
Eco130I	CCWWGG	3 cut(s)	1119, 1237, 2208
Eco147I	AGGCCT	2 cut(s)	1118, 1834
Eco47I	GGWCC	5 cut(s)	90, 177, 262, 519, 1123
Eco57I	CTGAAG	1 cut(s)	1230
Eco88I	CYCGRG	3 cut(s)	614, 718, 1306
EcoRI	GAATTC	2 cut(s)	457, 964
EcoRII	CCWGG	5 cut(s)	753, 1727, 2054, 2254, 2497
EcoT14I	CCWWGG	3 cut(s)	1119, 1237, 2208
EcoT22I	ATGCAT	2 cut(s)	940, 1761
ErhI	CCWWGG	3 cut(s)	1119, 1237, 2208
FaqI	GGGAC	1 cut(s)	2515
FauI	CCCGC	1 cut(s)	149
FauNDI	CATATG	1 cut(s)	2008
FbaI	TGATCA	2 cut(s)	1386, 1722
FblI	GTMKAC	1 cut(s)	2080
Fnu4HI	GCNGC	8 cut(s)	471, 570, 1672, 1866, 2115, 2132, 2333, 2556
FokI	GGATG	6 cut(s)	419, 718, 1324, 1817, 1897, 2380
Fsp4HI	GCNGC	8 cut(s)	471, 570, 1672, 1866, 2115, 2132, 2333, 2556
FspBI	CTAG	7 cut(s)	546, 839, 1548, 1605, 1622, 1686, 2151
GluI	GCNGC	8 cut(s)	471, 570, 1672, 1866, 2115, 2132, 2333, 2556
GsaI	CCCAGC	1 cut(s)	2307
GsuI	CTGGAG	3 cut(s)	1283, 2077, 2156
HaeIII	GGCC	6 cut(s)	272, 281, 1118, 1834, 2207, 2481
HgaI	GACGC	1 cut(s)	1430
Hin1I	GRCGYC	1 cut(s)	1411
HincII	GTYRAC	4 cut(s)	957, 991, 1651, 2081
HindII	GTYRAC	4 cut(s)	957, 991, 1651, 2081
HinfI	GANTC	7 cut(s)	137, 341, 653, 1258, 1537, 2082, 2532
HpaI	GTTAAC	1 cut(s)	957
HphI	GGTGA	5 cut(s)	346, 574, 874, 1381, 1717
Hpy166II	GTNNAC	8 cut(s)	555, 782, 957, 991, 1643, 1651, 2081, 2405
Hpy188I	TCNGA	9 cut(s)	136, 532, 792, 1210, 1333, 1704, 1902, 2035, 2362
Hpy8I	GTNNAC	8 cut(s)	555, 782, 957, 991, 1643, 1651, 2081, 2405
HpyCH4III	ACNGT	4 cut(s)	358, 670, 786, 868
HpyCH4IV	ACGT	1 cut(s)	1411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	257, 278, 509, 575, 619, 944, 1862, 2137
HpyF3I	CTNAG	6 cut(s)	435, 696, 789, 1675, 2034, 2528
HpySE526I	ACGT	1 cut(s)	1411
Hsp92I	GRCGYC	1 cut(s)	1411
Kpn2I	TCCGGA	2 cut(s)	1406, 2217
KroI	GCCGGC	1 cut(s)	1008
KroNI	GCCGGC	1 cut(s)	1010
Ksp22I	TGATCA	2 cut(s)	1386, 1722
KspAI	GTTAAC	1 cut(s)	957
Kzo9I	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
LmnI	GCTCC	7 cut(s)	170, 496, 541, 1051, 1999, 2137, 2340
Lsp1109I	GCAGC	8 cut(s)	457, 556, 1658, 1877, 2126, 2143, 2344, 2567
LweI	GCATC	3 cut(s)	397, 1695, 2565
MabI	ACCWGGT	1 cut(s)	753
MaeI	CTAG	7 cut(s)	546, 839, 1548, 1605, 1622, 1686, 2151
MaeII	ACGT	1 cut(s)	1411
MalI	GATC	9 cut(s)	152, 444, 1388, 1589, 1724, 2214, 2270, 2310, 2591
MbiI	CCGCTC	2 cut(s)	144, 1054
MboI	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
MflI	RGATCY	3 cut(s)	1587, 2212, 2308
MhlI	GDGCHC	2 cut(s)	1645, 2454
MlyI	GAGTC	6 cut(s)	350, 662, 1267, 1531, 2076, 2541
MmeI	TCCRAC	3 cut(s)	91, 888, 2246
Mph1103I	ATGCAT	2 cut(s)	940, 1761
MroI	TCCGGA	2 cut(s)	1406, 2217
MroNI	GCCGGC	1 cut(s)	1008
MroXI	GAANNNNTTC	2 cut(s)	1907, 2638
MslI	CAYNNNNRTG	6 cut(s)	215, 318, 933, 1175, 1596, 2091
MspA1I	CMGCKG	1 cut(s)	2134
MspCI	CTTAAG	1 cut(s)	1511
MspR9I	CCNGG	7 cut(s)	175, 257, 755, 1729, 2056, 2256, 2499
Mva1269I	GAATGC	2 cut(s)	1078, 1214
MvaI	CCWGG	5 cut(s)	755, 1729, 2056, 2256, 2499
MwoI	GCNNNNNNNGC	8 cut(s)	257, 278, 509, 575, 619, 944, 1862, 2137
NaeI	GCCGGC	1 cut(s)	1010
NciI	CCSGG	2 cut(s)	175, 257
NcoI	CCATGG	2 cut(s)	1237, 2208
NdeI	CATATG	1 cut(s)	2008
NdeII	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
NgoMIV	GCCGGC	1 cut(s)	1008
NlaIV	GGNNCC	5 cut(s)	543, 1506, 2053, 2139, 2615
NmuCI	GTSAC	7 cut(s)	182, 274, 352, 749, 862, 1045, 2153
NsiI	ATGCAT	2 cut(s)	940, 1761
NspI	RCATGY	4 cut(s)	997, 1200, 1303, 1657
NspV	TTCGAA	1 cut(s)	584
PaeR7I	CTCGAG	2 cut(s)	718, 1306
PagI	TCATGA	2 cut(s)	1414, 1533
PaqCI	CACCTGC	1 cut(s)	2039
PceI	AGGCCT	2 cut(s)	1118, 1834
PciI	ACATGT	3 cut(s)	993, 1299, 1653
PctI	GAATGC	2 cut(s)	1078, 1214
PdiI	GCCGGC	1 cut(s)	1010
PdmI	GAANNNNTTC	2 cut(s)	1907, 2638
PfeI	GAWTC	1 cut(s)	137
PinAI	ACCGGT	2 cut(s)	798, 1391
PkrI	GCNGC	8 cut(s)	472, 571, 1673, 1867, 2116, 2133, 2334, 2557
PleI	GAGTC	6 cut(s)	349, 661, 1266, 1531, 2076, 2540
PpsI	GAGTC	6 cut(s)	349, 661, 1266, 1531, 2076, 2540
PscI	ACATGT	3 cut(s)	993, 1299, 1653
Psp6I	CCWGG	5 cut(s)	753, 1727, 2054, 2254, 2497
PspFI	CCCAGC	1 cut(s)	2303
PspGI	CCWGG	5 cut(s)	753, 1727, 2054, 2254, 2497
PspN4I	GGNNCC	5 cut(s)	543, 1506, 2053, 2139, 2615
PspPI	GGNCC	6 cut(s)	90, 177, 262, 280, 519, 1123
PspXI	VCTCGAGB	1 cut(s)	1306
PstI	CTGCAG	1 cut(s)	2133
PsuI	RGATCY	3 cut(s)	1587, 2212, 2308
PvuII	CAGCTG	1 cut(s)	2134
RsaI	GTAC	3 cut(s)	1304, 1480, 2406
RsaNI	GTAC	3 cut(s)	1303, 1479, 2405
RseI	CAYNNNNRTG	6 cut(s)	215, 318, 933, 1175, 1596, 2091
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	2079
SatI	GCNGC	8 cut(s)	471, 570, 1672, 1866, 2115, 2132, 2333, 2556
Sau3AI	GATC	9 cut(s)	150, 442, 1386, 1587, 1722, 2212, 2268, 2308, 2589
Sau96I	GGNCC	6 cut(s)	90, 177, 262, 280, 519, 1123
SchI	GAGTC	6 cut(s)	350, 662, 1267, 1531, 2076, 2541
ScrFI	CCNGG	7 cut(s)	175, 257, 755, 1729, 2056, 2256, 2499
SduI	GDGCHC	2 cut(s)	1645, 2454
SexAI	ACCWGGT	1 cut(s)	753
SfaNI	GCATC	3 cut(s)	397, 1695, 2565
SfcI	CTRYAG	2 cut(s)	1632, 2129
SfiI	GGCCNNNNNGGCC	1 cut(s)	278
Sfr274I	CTCGAG	2 cut(s)	718, 1306
SfuI	TTCGAA	1 cut(s)	584
SinI	GGWCC	5 cut(s)	90, 177, 262, 519, 1123
SlaI	CTCGAG	2 cut(s)	718, 1306
SmiMI	CAYNNNNRTG	6 cut(s)	215, 318, 933, 1175, 1596, 2091
SmlI	CTYRAG	5 cut(s)	266, 607, 718, 1306, 1511
SmoI	CTYRAG	5 cut(s)	266, 607, 718, 1306, 1511
SseBI	AGGCCT	2 cut(s)	1118, 1834
SsiI	CCGC	5 cut(s)	142, 260, 1054, 1204, 1255
SspMI	CTAG	7 cut(s)	546, 839, 1548, 1605, 1622, 1686, 2151
StuI	AGGCCT	2 cut(s)	1118, 1834
StyD4I	CCNGG	7 cut(s)	173, 255, 753, 1727, 2054, 2254, 2497
StyI	CCWWGG	3 cut(s)	1119, 1237, 2208
TaaI	ACNGT	4 cut(s)	358, 670, 786, 868
TaiI	ACGT	1 cut(s)	1414
TatI	WGTACW	2 cut(s)	1302, 2404
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	3 cut(s)	789, 985, 1650
TseFI	GTSAC	7 cut(s)	182, 274, 352, 749, 862, 1045, 2153
TseI	GCWGC	8 cut(s)	470, 569, 1671, 1865, 2114, 2131, 2332, 2555
Tsp45I	GTSAC	7 cut(s)	182, 274, 352, 749, 862, 1045, 2153
TspGWI	ACGGA	1 cut(s)	1064
TspRI	CASTG	3 cut(s)	789, 985, 1650
Vha464I	CTTAAG	1 cut(s)	1511
VneI	GTGCAC	1 cut(s)	1641
VpaK11BI	GGWCC	5 cut(s)	90, 177, 262, 519, 1123
XapI	RAATTY	6 cut(s)	329, 457, 586, 924, 964, 1326
XbaI	TCTAGA	2 cut(s)	838, 1685
XceI	RCATGY	4 cut(s)	997, 1200, 1303, 1657
XhoI	CTCGAG	2 cut(s)	718, 1306
XmiI	GTMKAC	1 cut(s)	2080
XmnI	GAANNNNTTC	2 cut(s)	1907, 2638
XspI	CTAG	7 cut(s)	546, 839, 1548, 1605, 1622, 1686, 2151
ZraI	GACGTC	1 cut(s)	1412
Zsp2I	ATGCAT	2 cut(s)	940, 1761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.