Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g13960 |
| malus_domestica | MD05G1239500.v1.1 MD10G1217700.v1.1 |
| prunus_persica | Prupe.4G126300_v2.0.a1 |
| pyrus_communis | pycom05g21580 pycom10g18360 |
| rosa_chinensis | RchiOBHm_Chr5g0023171 |
| rosa_laevigata | RLG00000032705 |
| rosa_multiflora | Rmu_sc0007300.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00056170 |
| rosa_rugosa | Rorug05G0077700 |
| rosa_samantha | Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600 |
| rosa_wichuraiana | Rw0G018300 Rw5G014790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 505 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1187 |
| Acc36I | ACCTGC | 1 cut(s) | 505 |
| AccI | GTMKAC | 2 cut(s) | 196, 1233 |
| AciI | CCGC | 1 cut(s) | 29 |
| AclWI | GGATC | 3 cut(s) | 615, 1310, 1323 |
| AcoI | YGGCCR | 1 cut(s) | 1347 |
| AcsI | RAATTY | 1 cut(s) | 622 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfaI | GTAC | 5 cut(s) | 239, 416, 422, 809, 1337 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 411, 665, 942, 1504 |
| AflIII | ACRYGT | 2 cut(s) | 417, 1470 |
| AgsI | TTSAA | 5 cut(s) | 55, 222, 758, 773, 1202 |
| AluBI | AGCT | 8 cut(s) | 14, 226, 500, 881, 1169, 1253, 1388, 1481 |
| AluI | AGCT | 8 cut(s) | 14, 226, 500, 881, 1169, 1253, 1388, 1481 |
| Alw21I | GWGCWC | 3 cut(s) | 435, 844, 981 |
| Alw26I | GTCTC | 1 cut(s) | 1497 |
| AlwI | GGATC | 3 cut(s) | 615, 1310, 1323 |
| AoxI | GGCC | 2 cut(s) | 350, 1347 |
| ApeKI | GCWGC | 2 cut(s) | 691, 1385 |
| ApoI | RAATTY | 1 cut(s) | 622 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1499, 1531 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AspS9I | GGNCC | 2 cut(s) | 350, 1507 |
| AsuHPI | GGTGA | 1 cut(s) | 1487 |
| AvaII | GGWCC | 1 cut(s) | 1507 |
| BalI | TGGCCA | 1 cut(s) | 1349 |
| BamHI | GGATCC | 1 cut(s) | 1315 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 3 cut(s) | 435, 844, 981 |
| BbvI | GCAGC | 2 cut(s) | 678, 1397 |
| BccI | CCATC | 5 cut(s) | 167, 452, 695, 1063, 1368 |
| BceAI | ACGGC | 1 cut(s) | 920 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1274, 1308 |
| BciVI | GTATCC | 1 cut(s) | 1254 |
| BcoDI | GTCTC | 1 cut(s) | 1497 |
| BfaI | CTAG | 4 cut(s) | 15, 32, 227, 1389 |
| BfmI | CTRYAG | 2 cut(s) | 692, 1293 |
| BfuAI | ACCTGC | 1 cut(s) | 505 |
| BfuI | GTATCC | 1 cut(s) | 1254 |
| BglII | AGATCT | 1 cut(s) | 1153 |
| BisI | GCNGC | 3 cut(s) | 29, 692, 1386 |
| BlsI | GCNGC | 3 cut(s) | 30, 693, 1387 |
| Bme18I | GGWCC | 1 cut(s) | 1507 |
| BmgT120I | GGNCC | 2 cut(s) | 350, 1507 |
| BmiI | GGNNCC | 1 cut(s) | 1317 |
| BmsI | GCATC | 3 cut(s) | 770, 1012, 1354 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 965 |
| BpuEI | CTTGAG | 2 cut(s) | 419, 527 |
| BsaAI | YACGTR | 2 cut(s) | 241, 420 |
| BsaJI | CCNNGG | 1 cut(s) | 1284 |
| BsaWI | WCCGGW | 2 cut(s) | 191, 1433 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 125, 140, 170 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 411, 665, 942, 1504 |
| Bse3DI | GCAATG | 3 cut(s) | 390, 456, 693 |
| BseDI | CCNNGG | 1 cut(s) | 1284 |
| BseGI | GGATG | 2 cut(s) | 703, 1074 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 411, 665, 942, 1504 |
| BseMI | GCAATG | 3 cut(s) | 390, 456, 693 |
| BseRI | GAGGAG | 4 cut(s) | 605, 986, 1016, 1411 |
| BseXI | GCAGC | 2 cut(s) | 678, 1397 |
| BseYI | CCCAGC | 1 cut(s) | 500 |
| BshFI | GGCC | 2 cut(s) | 352, 1349 |
| BsiHKAI | GWGCWC | 3 cut(s) | 435, 844, 981 |
| BsiSI | CCGG | 4 cut(s) | 192, 746, 1008, 1434 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 411, 665, 942, 1504 |
| BsmAI | GTCTC | 1 cut(s) | 1497 |
| BsmI | GAATGC | 2 cut(s) | 535, 960 |
| BsnI | GGCC | 2 cut(s) | 352, 1349 |
| Bsp1286I | GDGCHC | 3 cut(s) | 435, 844, 981 |
| Bsp143I | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| BspACI | CCGC | 1 cut(s) | 29 |
| BspANI | GGCC | 2 cut(s) | 352, 1349 |
| BspLI | GGNNCC | 1 cut(s) | 1317 |
| BspMAI | CTGCAG | 2 cut(s) | 696, 1297 |
| BspMI | ACCTGC | 1 cut(s) | 505 |
| BspPI | GGATC | 3 cut(s) | 615, 1310, 1323 |
| BspQI | GCTCTTC | 1 cut(s) | 1159 |
| BsrDI | GCAATG | 3 cut(s) | 390, 456, 693 |
| BssECI | CCNNGG | 1 cut(s) | 1284 |
| BssMI | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| BssNAI | GTATAC | 1 cut(s) | 1234 |
| Bst1107I | GTATAC | 1 cut(s) | 1234 |
| Bst4CI | ACNGT | 3 cut(s) | 794, 812, 1238 |
| Bst6I | CTCTTC | 2 cut(s) | 574, 1159 |
| BstBAI | YACGTR | 2 cut(s) | 241, 420 |
| BstC8I | GCNNGC | 7 cut(s) | 709, 713, 740, 966, 1144, 1208, 1351 |
| BstDEI | CTNAG | 1 cut(s) | 552 |
| BstF5I | GGATG | 2 cut(s) | 703, 1074 |
| BstKTI | GATC | 5 cut(s) | 183, 610, 901, 1156, 1318 |
| BstMAI | GTCTC | 1 cut(s) | 1497 |
| BstMBI | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 446, 511, 539 |
| BstNSI | RCATGY | 5 cut(s) | 711, 725, 968, 1210, 1357 |
| BstSFI | CTRYAG | 2 cut(s) | 692, 1293 |
| BstV1I | GCAGC | 2 cut(s) | 678, 1397 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 3 cut(s) | 607, 1153, 1315 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 241, 1453, 1564 |
| BstYI | RGATCY | 3 cut(s) | 607, 1153, 1315 |
| BstZ17I | GTATAC | 1 cut(s) | 1234 |
| BsuI | GTATCC | 1 cut(s) | 1254 |
| BsuRI | GGCC | 2 cut(s) | 352, 1349 |
| BtgZI | GCGATG | 1 cut(s) | 1387 |
| BtsCI | GGATG | 2 cut(s) | 703, 1074 |
| BtsI | GCAGTG | 1 cut(s) | 844 |
| BtsIMutI | CAGTG | 3 cut(s) | 400, 790, 844 |
| BveI | ACCTGC | 1 cut(s) | 505 |
| Cac8I | GCNNGC | 7 cut(s) | 709, 713, 740, 966, 1144, 1208, 1351 |
| Cfr13I | GGNCC | 2 cut(s) | 350, 1507 |
| CseI | GACGC | 2 cut(s) | 278, 1391 |
| Csp6I | GTAC | 5 cut(s) | 238, 415, 421, 808, 1336 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 424, 459 |
| CviAII | CATG | 9 cut(s) | 73, 482, 628, 708, 722, 959, 965, 1207, 1354 |
| CviQI | GTAC | 5 cut(s) | 238, 415, 421, 808, 1336 |
| DdeI | CTNAG | 1 cut(s) | 552 |
| DpnI | GATC | 5 cut(s) | 182, 609, 900, 1155, 1317 |
| DpnII | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1187 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1187 |
| EaeI | YGGCCR | 1 cut(s) | 1347 |
| Eam1104I | CTCTTC | 2 cut(s) | 574, 1159 |
| EarI | CTCTTC | 2 cut(s) | 574, 1159 |
| Eco47I | GGWCC | 1 cut(s) | 1507 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| EcoRI | GAATTC | 1 cut(s) | 622 |
| EcoT22I | ATGCAT | 1 cut(s) | 960 |
| FaeI | CATG | 9 cut(s) | 76, 485, 631, 711, 725, 962, 968, 1210, 1357 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 489, 521 |
| FatI | CATG | 9 cut(s) | 72, 481, 627, 707, 721, 958, 964, 1206, 1353 |
| FblI | GTMKAC | 2 cut(s) | 196, 1233 |
| Fnu4HI | GCNGC | 3 cut(s) | 29, 692, 1386 |
| FokI | GGATG | 2 cut(s) | 710, 1081 |
| Fsp4HI | GCNGC | 3 cut(s) | 29, 692, 1386 |
| FspBI | CTAG | 4 cut(s) | 15, 32, 227, 1389 |
| GluI | GCNGC | 3 cut(s) | 29, 692, 1386 |
| GsaI | CCCAGC | 1 cut(s) | 504 |
| GsuI | CTGGAG | 1 cut(s) | 965 |
| HaeIII | GGCC | 2 cut(s) | 352, 1349 |
| HapII | CCGG | 4 cut(s) | 192, 746, 1008, 1434 |
| HgaI | GACGC | 2 cut(s) | 278, 1391 |
| Hin1II | CATG | 9 cut(s) | 76, 485, 631, 711, 725, 962, 968, 1210, 1357 |
| HinfI | GANTC | 5 cut(s) | 254, 787, 824, 1004, 1490 |
| HpaII | CCGG | 4 cut(s) | 192, 746, 1008, 1434 |
| HphI | GGTGA | 1 cut(s) | 1487 |
| Hpy166II | GTNNAC | 4 cut(s) | 197, 417, 1050, 1234 |
| Hpy188I | TCNGA | 3 cut(s) | 660, 903, 1409 |
| Hpy188III | TCNNGA | 7 cut(s) | 39, 163, 576, 885, 982, 1319, 1423 |
| Hpy8I | GTNNAC | 4 cut(s) | 197, 417, 1050, 1234 |
| HpyAV | CCTTC | 7 cut(s) | 61, 79, 271, 466, 598, 659, 1326 |
| HpyCH4III | ACNGT | 3 cut(s) | 794, 812, 1238 |
| HpyCH4IV | ACGT | 6 cut(s) | 240, 321, 419, 798, 1438, 1472 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 446, 511, 539 |
| HpyF3I | CTNAG | 1 cut(s) | 552 |
| HpySE526I | ACGT | 6 cut(s) | 240, 321, 419, 798, 1438, 1472 |
| Hsp92II | CATG | 9 cut(s) | 76, 485, 631, 711, 725, 962, 968, 1210, 1357 |
| Kzo9I | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| LguI | GCTCTTC | 1 cut(s) | 1159 |
| LmnI | GCTCC | 6 cut(s) | 138, 244, 446, 984, 1250, 1478 |
| Lsp1109I | GCAGC | 2 cut(s) | 678, 1397 |
| LweI | GCATC | 3 cut(s) | 770, 1012, 1354 |
| MaeI | CTAG | 4 cut(s) | 15, 32, 227, 1389 |
| MaeII | ACGT | 6 cut(s) | 240, 321, 419, 798, 1438, 1472 |
| MaeIII | GTNAC | 3 cut(s) | 79, 794, 1058 |
| MalI | GATC | 5 cut(s) | 182, 609, 900, 1155, 1317 |
| MboI | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| MflI | RGATCY | 3 cut(s) | 607, 1153, 1315 |
| MhlI | GDGCHC | 3 cut(s) | 435, 844, 981 |
| MlsI | TGGCCA | 1 cut(s) | 1349 |
| MluCI | AATT | 4 cut(s) | 290, 622, 862, 1301 |
| MluNI | TGGCCA | 1 cut(s) | 1349 |
| MlyI | GAGTC | 3 cut(s) | 248, 1013, 1499 |
| MmeI | TCCRAC | 3 cut(s) | 160, 599, 1293 |
| Mox20I | TGGCCA | 1 cut(s) | 1349 |
| Mph1103I | ATGCAT | 1 cut(s) | 960 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MscI | TGGCCA | 1 cut(s) | 1349 |
| MseI | TTAA | 2 cut(s) | 62, 369 |
| MslI | CAYNNNNRTG | 4 cut(s) | 851, 963, 1451, 1562 |
| Msp20I | TGGCCA | 1 cut(s) | 1349 |
| MspI | CCGG | 4 cut(s) | 192, 746, 1008, 1434 |
| Mva1269I | GAATGC | 2 cut(s) | 535, 960 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 446, 511, 539 |
| NdeII | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| NlaIII | CATG | 9 cut(s) | 76, 485, 631, 711, 725, 962, 968, 1210, 1357 |
| NlaIV | GGNNCC | 1 cut(s) | 1317 |
| NmeAIII | GCCGAG | 1 cut(s) | 1309 |
| NmuCI | GTSAC | 1 cut(s) | 1058 |
| NsiI | ATGCAT | 1 cut(s) | 960 |
| NspI | RCATGY | 5 cut(s) | 711, 725, 968, 1210, 1357 |
| PaeI | GCATGC | 3 cut(s) | 711, 968, 1210 |
| PaqCI | CACCTGC | 1 cut(s) | 505 |
| PciSI | GCTCTTC | 1 cut(s) | 1159 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 318, 857 |
| PctI | GAATGC | 2 cut(s) | 535, 960 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 2 cut(s) | 787, 824 |
| PkrI | GCNGC | 3 cut(s) | 30, 693, 1387 |
| PleI | GAGTC | 3 cut(s) | 248, 1012, 1498 |
| PpsI | GAGTC | 3 cut(s) | 248, 1012, 1498 |
| Ppu21I | YACGTR | 2 cut(s) | 241, 420 |
| PspFI | CCCAGC | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 1 cut(s) | 1317 |
| PspPI | GGNCC | 2 cut(s) | 350, 1507 |
| PstI | CTGCAG | 2 cut(s) | 696, 1297 |
| PsuI | RGATCY | 3 cut(s) | 607, 1153, 1315 |
| RsaI | GTAC | 5 cut(s) | 239, 416, 422, 809, 1337 |
| RsaNI | GTAC | 5 cut(s) | 238, 415, 421, 808, 1336 |
| RseI | CAYNNNNRTG | 4 cut(s) | 851, 963, 1451, 1562 |
| SapI | GCTCTTC | 1 cut(s) | 1159 |
| SaqAI | TTAA | 2 cut(s) | 62, 369 |
| SatI | GCNGC | 3 cut(s) | 29, 692, 1386 |
| Sau3AI | GATC | 5 cut(s) | 180, 607, 898, 1153, 1315 |
| Sau96I | GGNCC | 2 cut(s) | 350, 1507 |
| SchI | GAGTC | 3 cut(s) | 248, 1013, 1499 |
| SduI | GDGCHC | 3 cut(s) | 435, 844, 981 |
| SfaNI | GCATC | 3 cut(s) | 770, 1012, 1354 |
| SfcI | CTRYAG | 2 cut(s) | 692, 1293 |
| SinI | GGWCC | 1 cut(s) | 1507 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 851, 963, 1451, 1562 |
| SmlI | CTYRAG | 2 cut(s) | 434, 506 |
| SmoI | CTYRAG | 2 cut(s) | 434, 506 |
| SphI | GCATGC | 3 cut(s) | 711, 968, 1210 |
| Sse9I | AATT | 4 cut(s) | 290, 622, 862, 1301 |
| SsiI | CCGC | 1 cut(s) | 29 |
| SspMI | CTAG | 4 cut(s) | 15, 32, 227, 1389 |
| TaaI | ACNGT | 3 cut(s) | 794, 812, 1238 |
| TaiI | ACGT | 6 cut(s) | 243, 324, 422, 801, 1441, 1475 |
| TaqI | TCGA | 4 cut(s) | 285, 575, 871, 1179 |
| TaqII | GACCGA | 1 cut(s) | 311 |
| TasI | AATT | 4 cut(s) | 290, 622, 862, 1301 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TfiI | GAWTC | 2 cut(s) | 787, 824 |
| Tru1I | TTAA | 2 cut(s) | 62, 369 |
| Tru9I | TTAA | 2 cut(s) | 62, 369 |
| TscAI | CASTG | 3 cut(s) | 400, 797, 844 |
| TseFI | GTSAC | 1 cut(s) | 1058 |
| TseI | GCWGC | 2 cut(s) | 691, 1385 |
| Tsp45I | GTSAC | 1 cut(s) | 1058 |
| TspDTI | ATGAA | 6 cut(s) | 17, 61, 303, 470, 678, 1374 |
| TspGWI | ACGGA | 3 cut(s) | 289, 1128, 1520 |
| TspRI | CASTG | 3 cut(s) | 400, 797, 844 |
| VpaK11BI | GGWCC | 1 cut(s) | 1507 |
| XapI | RAATTY | 1 cut(s) | 622 |
| XceI | RCATGY | 5 cut(s) | 711, 725, 968, 1210, 1357 |
| XmiI | GTMKAC | 2 cut(s) | 196, 1233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| XspI | CTAG | 4 cut(s) | 15, 32, 227, 1389 |
| Zsp2I | ATGCAT | 1 cut(s) | 960 |