MD05G1239500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014691
Physical Location & Seq
Forward (+)
37034358 .. 37034997
640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1239500.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGTGCTGCTACTCAAGACCCAGATAAATGGTTTAGCCAGACAAGCGGAGGTTTTAATTTCATGGAAGGAACCCTTCAGATTATTAGGGTTTTTCATTGGTGGCAGAACATACACGACACTTCATTGCAGAGACTCTTATCACTATACCTACTTGCTGCAACACTGTAAAAGCACCAAATCGATCAAAAAACTCCATGCCCAGATAACCACTGGAGGTTTTGAGCAAAACCCATTTGTCGTTGCAAAGCTAGTTGGCAAGTATGTTGAGTGCAGTGAATCAAGCATGGAAGCTGCACGGAAGGTGTTTGATAGATTGCTCGAGAGAGATGTTTTTGTGTGGAACATGGTTATTCAGGGTTATGCGAATGTGGGTCCTTTTGTTGAAGCACTCAATGTGTATGATAGAATGCGGTTGAGTGGTGTGCCTGCAAATAGGTACACCTACCCTTTTGTGCTCAAGGCTTGTGGTGCAATGAGAGATGGAAAACGAGGTCGGATTGTTCATGGACATGTCGTGAAATGTGGACTCGACTCGGATTTATTGAGATATCGAGAAGAGTGTTTGATGAAATACCTGGGAAAGATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

198

Amino Acids

22.59

Weight (kDa)

9.53

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 109 - 156 2.2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13960
malus_domestica MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica Prupe.4G126300_v2.0.a1
pyrus_communis pycom05g21580 pycom10g18360
rosa_chinensis RchiOBHm_Chr5g0023171
rosa_laevigata RLG00000032705
rosa_multiflora Rmu_sc0007300.1_g000014
rosa_roxburghii Rroxscaffold_1G00056170
rosa_rugosa Rorug05G0077700
rosa_samantha Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 412
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 1 cut(s) 386
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 2 cut(s) 250, 293
AluI AGCT 2 cut(s) 250, 293
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 3 cut(s) 7, 157, 293
AspS9I GGNCC 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 144, 280
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 578
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 251
BisI GCNGC 3 cut(s) 8, 158, 294
BlsI GCNGC 3 cut(s) 9, 159, 295
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 72, 375
BmrFI CCNGG 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 577
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 124, 480
BseBI CCWGG 1 cut(s) 578
BseCI ATCGAT 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 577
BseMI GCAATG 2 cut(s) 124, 480
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 144, 280
BsgI GTGCAG 2 cut(s) 279, 292
BshVI ATCGAT 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 414
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 2 cut(s) 47, 412
BspDI ATCGAT 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 72, 375
BsrDI GCAATG 2 cut(s) 124, 480
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 429
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 44, 470
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 144, 280
BstXI CCANNNNNNTGG 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 163, 210, 280
Cac8I GCNNGC 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 182
Csp6I GTAC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 6 cut(s) 63, 197, 286, 346, 506, 512
CviJI RGCY 4 cut(s) 38, 250, 293, 464
CviKI_1 RGCY 4 cut(s) 38, 250, 293, 464
CviQI GTAC 1 cut(s) 439
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 576
EcoRV GATATC 1 cut(s) 551
FaeI CATG 6 cut(s) 66, 200, 289, 349, 509, 515
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 6 cut(s) 62, 196, 285, 345, 505, 511
Fnu4HI GCNGC 3 cut(s) 8, 158, 294
Fsp4HI GCNGC 3 cut(s) 8, 158, 294
FspBI CTAG 1 cut(s) 251
GluI GCNGC 3 cut(s) 8, 158, 294
GsuI CTGGAG 1 cut(s) 234
Hin1II CATG 6 cut(s) 66, 200, 289, 349, 509, 515
HinfI GANTC 5 cut(s) 134, 278, 528, 533, 586
Hpy166II GTNNAC 2 cut(s) 441, 527
Hpy188I TCNGA 3 cut(s) 80, 498, 538
Hpy188III TCNNGA 4 cut(s) 16, 322, 517, 554
Hpy8I GTNNAC 2 cut(s) 441, 527
HpyAV CCTTC 3 cut(s) 61, 85, 295
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 7 cut(s) 129, 160, 245, 273, 296, 431, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 470
Hsp92II CATG 6 cut(s) 66, 200, 289, 349, 509, 515
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 8 cut(s) 35, 52, 198, 215, 341, 441, 563, 590
Lsp1109I GCAGC 2 cut(s) 144, 280
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 459
MluCI AATT 1 cut(s) 57
MlyI GAGTC 3 cut(s) 128, 522, 527
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 3 cut(s) 43, 209, 485
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 2 cut(s) 44, 470
NdeII GATC 1 cut(s) 183
NlaIII CATG 6 cut(s) 66, 200, 289, 349, 509, 515
NlaIV GGNNCC 2 cut(s) 72, 375
NspI RCATGY 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 320
PciI ACATGT 1 cut(s) 511
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 2 cut(s) 278, 586
PkrI GCNGC 3 cut(s) 9, 159, 295
PleI GAGTC 3 cut(s) 128, 522, 527
PpsI GAGTC 3 cut(s) 128, 522, 527
PpuMI RGGWCCY 1 cut(s) 374
PscI ACATGT 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 2 cut(s) 72, 375
PspPI GGNCC 1 cut(s) 374
PspPPI RGGWCCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 8, 158, 294
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 3 cut(s) 128, 522, 527
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 374
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 3 cut(s) 14, 320, 458
SmoI CTYRAG 3 cut(s) 14, 320, 458
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 47, 412
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 4 cut(s) 182, 321, 531, 553
TasI AATT 1 cut(s) 57
TfiI GAWTC 2 cut(s) 278, 586
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 3 cut(s) 170, 217, 280
TseI GCWGC 3 cut(s) 7, 157, 293
TspDTI ATGAA 5 cut(s) 51, 85, 113, 494, 584
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 3 cut(s) 170, 217, 280
VpaK11BI GGWCC 1 cut(s) 374
XceI RCATGY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.