RLG00000032705

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014691
Physical Location & Seq
Reverse (-)
18030353 .. 18032261
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032705

Sequence Viewer

Length: 1314 bp
ATGTTGCCGCTACCGAAGACCCAATTGAATGGGTTAGCTAGACAAGCAGAGCTTTTAGTTTCACGAACCGAATGCTTTAATTTACGGACGTTTTTCATCGGAGGTACAAGAACATACGTGAAACACCATTACAGAAACTCCTACGATTATACAGACTTGCTTCAACATTGCAGAAACACCAAATCAATCAAGAAAATCCACGCCCAGATCATCATCGGTGGCTTACACCAAAACCCATTTGTCGCTTCAAAGCTGGTAGGCAAGTACGTGGAGTGCAGTGACTCAAGTATGGGAGATGCACGGAAGGTGTTCGATGAATTGACTGAGAGAGATGTGTTTGTATGGAACATGGTCATTCAGGGTTACGCAAATGTTGGGCCTTTTGCTGAAGCCCTTAAAATGTGTAATAGAATGAGGCTGAGTGGGTTATCCCCAAATCGGTACACTTACCCTTTTGTGCTGAAGGCTTGTGGAGCAATGAGAGATGGAAAGCAGGGTCAGGTTGTTCATGGGCAGATTGTGAAATCTGGGCTTGACTTGCAGTTGTTTGTGGGGAATGCTCTTGTGGCATTGTATTCTAAGTGTGAGGAAATTGAGGTATCGAGAAGAGTCTTCGATGAATTGCCTCTGAAAGATCTTGTTAGTTGGAATTCCATGATTTCGGGGTATGCCACGAATGGATACCCGAATGAGGCTGTTGAAATTTTTCGTGCAATGATACAAGGTCCTACTACATGCTTGCCTGACCATGCCACTCTGGTTTGCGTGCTTCCGGCTTGTATTGAAGCATCTGCTATTGAAGTTGGGTTTTGGATTCATTCTTACATTGTGAAGACGAGTATAAAAGTTGACTCTGCTTTGGGCAGTGCTCTCATTTCAATGTATGCAAACTGTGGTCGCGTAAGAGTTTCCAGAGTTATCTTTGATCGAGTAAGTGATAAGAACGTGGTGCTGTGGAGCGCCATGATGAGGTGTTATGGAATGCATGGGCACACAGACGAGGTGCTCCAGATGTTTTTGCAGTTTGAGGAGTCCGGTTTATACCCAGATGCTGTTGTGGTTTTGTGTTTATTGTCCACTTGTAGTCACGCAGGGATGGTTTCAAAAGGCTTGGAAATTTTTGAAAAAATGGAAGATTACGGAGTAGAGAAAAACGAGAAGCATTATGCTTGCATTGTAGACCTTCTGGGAAGAGCTGGGTTAATTGACCGGGCAGTCAAGTTTATTGAAAGCATGCCCATACAGGCAGGGAAAGATCTGATAACTCTTACAGCCCGAGTGTTGTCTGTACCATTATACATTGTTCTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

438

Amino Acids

48.9

Weight (kDa)

8.12

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 110 - 157 9.8e-11 PPR repeat family
PPR_3 PF13812 110 - 159 6.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 212 - 260 1.7e-06 PPR repeat family
PPR PF01535 214 - 240 1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13960
malus_domestica MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica Prupe.4G126300_v2.0.a1
pyrus_communis pycom05g21580 pycom10g18360
rosa_chinensis RchiOBHm_Chr5g0023171
rosa_laevigata RLG00000032705
rosa_multiflora Rmu_sc0007300.1_g000014
rosa_roxburghii Rroxscaffold_1G00056170
rosa_rugosa Rorug05G0077700
rosa_samantha Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1214
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 1 cut(s) 900
AciI CCGC 1 cut(s) 8
AcsI RAATTY 3 cut(s) 649, 702, 1116
AcuI CTGAAG 2 cut(s) 408, 482
AfaI GTAC 4 cut(s) 106, 266, 443, 1290
AfiI CCNNNNNNNGG 3 cut(s) 438, 691, 969
AluBI AGCT 4 cut(s) 38, 52, 253, 1196
AluI AGCT 4 cut(s) 38, 52, 253, 1196
Alw21I GWGCWC 2 cut(s) 871, 1008
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 1 cut(s) 1275
AoxI GGCC 1 cut(s) 377
ApoI RAATTY 3 cut(s) 649, 702, 1116
Asp700I GAANNNNTTC 2 cut(s) 308, 705
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 2 cut(s) 377, 725
AsuC2I CCSGG 1 cut(s) 1211
AvaI CYCGRG 1 cut(s) 1275
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 993
BbsI GAAGAC 3 cut(s) 23, 604, 839
Bbv12I GWGCWC 2 cut(s) 871, 1008
BccI CCATC 2 cut(s) 479, 1090
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciVI GTATCC 1 cut(s) 674
BcnI CCSGG 1 cut(s) 1211
BfaI CTAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 963
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 2 cut(s) 634, 1255
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 1211
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 1275
BmgT120I GGNCC 2 cut(s) 377, 725
BmrFI CCNGG 1 cut(s) 1211
BmsI GCATC 3 cut(s) 286, 797, 1039
BpiI GAAGAC 3 cut(s) 23, 604, 839
BpmI CTGGAG 1 cut(s) 992
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 1211
BsaAI YACGTR 2 cut(s) 118, 268
BsaBI GATNNNNATC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 1034
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 691, 969
Bse3DI GCAATG 3 cut(s) 166, 483, 720
Bse8I GATNNNNATC 1 cut(s) 212
BseGI GGATG 1 cut(s) 1101
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 438, 691, 969
BseMI GCAATG 3 cut(s) 166, 483, 720
BseMII CTCAG 2 cut(s) 315, 410
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 1 cut(s) 993
BseYI CCCAGC 1 cut(s) 1196
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 900
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 871, 1008
BsiHKCI CYCGRG 1 cut(s) 1275
BsiSI CCGG 3 cut(s) 773, 1035, 1210
BslI CCNNNNNNNGG 3 cut(s) 438, 691, 969
BsmI GAATGC 3 cut(s) 77, 562, 987
BsnI GGCC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 1275
Bsp1286I GDGCHC 3 cut(s) 871, 993, 1008
Bsp143I GATC 4 cut(s) 207, 634, 925, 1255
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 379
BspCNI CTCAG 2 cut(s) 316, 411
BspFNI CGCG 1 cut(s) 900
BspQI GCTCTTC 1 cut(s) 1186
BsrDI GCAATG 3 cut(s) 166, 483, 720
BssMI GATC 4 cut(s) 207, 634, 925, 1255
Bst4CI ACNGT 1 cut(s) 893
Bst6I CTCTTC 2 cut(s) 601, 1186
BstBAI YACGTR 2 cut(s) 118, 268
BstC8I GCNNGC 4 cut(s) 740, 767, 1171, 1235
BstDEI CTNAG 3 cut(s) 324, 419, 579
BstF5I GGATG 1 cut(s) 1101
BstFNI CGCG 1 cut(s) 900
BstH2I RGCGCY 1 cut(s) 963
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 4 cut(s) 210, 637, 928, 1258
BstMBI GATC 4 cut(s) 207, 634, 925, 1255
BstMWI GCNNNNNNNGC 4 cut(s) 44, 473, 538, 566
BstNSI RCATGY 2 cut(s) 738, 1237
BstSCI CCNGG 1 cut(s) 1209
BstSLI GKGCMC 1 cut(s) 993
BstUI CGCG 1 cut(s) 900
BstV2I GAAGAC 3 cut(s) 23, 604, 839
BstX2I RGATCY 2 cut(s) 634, 1255
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 2 cut(s) 634, 1255
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 1101
BtsI GCAGTG 2 cut(s) 283, 871
BtsIMutI CAGTG 2 cut(s) 283, 871
Cac8I GCNNGC 4 cut(s) 740, 767, 1171, 1235
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 377, 725
Csp6I GTAC 4 cut(s) 105, 265, 442, 1289
CviAII CATG 8 cut(s) 349, 509, 655, 735, 749, 964, 986, 1234
CviQI GTAC 4 cut(s) 105, 265, 442, 1289
DdeI CTNAG 3 cut(s) 324, 419, 579
DpnI GATC 4 cut(s) 209, 636, 927, 1257
DpnII GATC 4 cut(s) 207, 634, 925, 1255
DrdI GACNNNNNNGTC 1 cut(s) 1214
DseDI GACNNNNNNGTC 1 cut(s) 1214
Eam1104I CTCTTC 2 cut(s) 601, 1186
EarI CTCTTC 2 cut(s) 601, 1186
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 408, 482
Eco88I CYCGRG 1 cut(s) 1275
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 987
FaeI CATG 8 cut(s) 352, 512, 658, 738, 752, 967, 989, 1237
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 8 cut(s) 348, 508, 654, 734, 748, 963, 985, 1233
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 1108
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 39
GlaI GCGC 1 cut(s) 961
GluI GCNGC 1 cut(s) 8
GsaI CCCAGC 1 cut(s) 1200
GsuI CTGGAG 1 cut(s) 992
HaeII RGCGCY 1 cut(s) 963
HaeIII GGCC 1 cut(s) 379
HapII CCGG 3 cut(s) 773, 1035, 1210
HhaI GCGC 1 cut(s) 962
Hin1II CATG 8 cut(s) 352, 512, 658, 738, 752, 967, 989, 1237
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HinfI GANTC 5 cut(s) 281, 609, 814, 851, 1031
HpaII CCGG 3 cut(s) 773, 1035, 1210
Hpy166II GTNNAC 4 cut(s) 444, 850, 1077, 1180
Hpy188I TCNGA 3 cut(s) 101, 630, 1260
Hpy188III TCNNGA 5 cut(s) 63, 190, 603, 912, 1009
Hpy8I GTNNAC 4 cut(s) 444, 850, 1077, 1180
HpyAV CCTTC 3 cut(s) 298, 457, 1193
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 4 cut(s) 89, 117, 267, 945
HpyCH4V TGCA 9 cut(s) 171, 276, 299, 541, 713, 887, 985, 1021, 1173
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 473, 538, 566
HpyF3I CTNAG 3 cut(s) 324, 419, 579
HpySE526I ACGT 4 cut(s) 89, 117, 267, 945
Hsp92II CATG 8 cut(s) 352, 512, 658, 738, 752, 967, 989, 1237
HspAI GCGC 1 cut(s) 960
Kzo9I GATC 4 cut(s) 207, 634, 925, 1255
LguI GCTCTTC 1 cut(s) 1186
LmnI GCTCC 3 cut(s) 473, 957, 1011
LweI GCATC 3 cut(s) 286, 797, 1039
MaeI CTAG 1 cut(s) 39
MaeII ACGT 4 cut(s) 89, 117, 267, 945
MaeIII GTNAC 3 cut(s) 278, 362, 1085
MalI GATC 4 cut(s) 209, 636, 927, 1257
MboI GATC 4 cut(s) 207, 634, 925, 1255
MboII GAAGA 6 cut(s) 28, 604, 618, 844, 1145, 1203
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 2 cut(s) 634, 1255
MhlI GDGCHC 3 cut(s) 871, 993, 1008
MluCI AATT 9 cut(s) 23, 79, 317, 591, 620, 649, 702, 1116, 1203
MlyI GAGTC 4 cut(s) 275, 618, 845, 1040
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 9 cut(s) 95, 408, 580, 589, 636, 685, 963, 994, 1021
Mph1103I ATGCAT 1 cut(s) 987
MroXI GAANNNNTTC 2 cut(s) 308, 705
MseI TTAA 3 cut(s) 78, 396, 1202
MslI CAYNNNNRTG 1 cut(s) 878
MspI CCGG 3 cut(s) 773, 1035, 1210
MspR9I CCNGG 1 cut(s) 1211
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 3 cut(s) 77, 562, 987
MvnI CGCG 1 cut(s) 900
MwoI GCNNNNNNNGC 4 cut(s) 44, 473, 538, 566
NciI CCSGG 1 cut(s) 1211
NdeII GATC 4 cut(s) 207, 634, 925, 1255
NlaIII CATG 8 cut(s) 352, 512, 658, 738, 752, 967, 989, 1237
NmuCI GTSAC 2 cut(s) 278, 1085
NsiI ATGCAT 1 cut(s) 987
NspI RCATGY 2 cut(s) 738, 1237
PaeI GCATGC 1 cut(s) 1237
PciSI GCTCTTC 1 cut(s) 1186
PctI GAATGC 3 cut(s) 77, 562, 987
PdmI GAANNNNTTC 2 cut(s) 308, 705
PfeI GAWTC 1 cut(s) 814
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 4 cut(s) 275, 617, 845, 1039
PpsI GAGTC 4 cut(s) 275, 617, 845, 1039
Ppu21I YACGTR 2 cut(s) 118, 268
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 1196
PspPI GGNCC 2 cut(s) 377, 725
PspPPI RGGWCCY 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 2 cut(s) 634, 1255
RsaI GTAC 4 cut(s) 106, 266, 443, 1290
RsaNI GTAC 4 cut(s) 105, 265, 442, 1289
RseI CAYNNNNRTG 1 cut(s) 878
SapI GCTCTTC 1 cut(s) 1186
SaqAI TTAA 3 cut(s) 78, 396, 1202
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 4 cut(s) 207, 634, 925, 1255
Sau96I GGNCC 2 cut(s) 377, 725
SchI GAGTC 4 cut(s) 275, 618, 845, 1040
ScrFI CCNGG 1 cut(s) 1211
SduI GDGCHC 3 cut(s) 871, 993, 1008
SfaNI GCATC 3 cut(s) 286, 797, 1039
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SphI GCATGC 1 cut(s) 1237
Sse9I AATT 9 cut(s) 23, 79, 317, 591, 620, 649, 702, 1116, 1203
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 1209
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 4 cut(s) 92, 120, 270, 948
TaqI TCGA 4 cut(s) 312, 602, 615, 928
TasI AATT 9 cut(s) 23, 79, 317, 591, 620, 649, 702, 1116, 1203
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 3 cut(s) 78, 396, 1202
Tru9I TTAA 3 cut(s) 78, 396, 1202
TscAI CASTG 2 cut(s) 283, 871
TseFI GTSAC 2 cut(s) 278, 1085
Tsp45I GTSAC 2 cut(s) 278, 1085
TspDTI ATGAA 5 cut(s) 85, 330, 497, 633, 806
TspGWI ACGGA 3 cut(s) 100, 316, 1155
TspRI CASTG 2 cut(s) 283, 871
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 3 cut(s) 649, 702, 1116
XceI RCATGY 2 cut(s) 738, 1237
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 2 cut(s) 308, 705
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.