Rmu_sc0007300.1_g000014

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007300.1
OG0014691
Physical Location & Seq
Forward (+)
59262 .. 60743
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007300.1_g000014.1.cds

Sequence Viewer

Length: 1482 bp
atgaaaccccattacagaaactcctatgattacacagacttgcttcaacattgcaggaacaccaaatcaatcaagaaactccacgcccagatcatcgtcggaggtctacaccaaaacccatttgtggcttcaaagctagtaggcaagtacgtggagtgtggtgactcaagtatgggagatgcacggaaggtgttcgatgaattgactgagagagatgtgtttgtatggaacatggtcattcagggttatgcaaatgttggtccttttgctgaagcccttaaaatgtgtaatagaatgaggctgagtgggttatccccaaatcggtatacttacccttttgtgcttaaggcttgtggagcaatgagagatggaaagcagggtcaggttgttcatgggcagattgtgaaatctgggcttgacttgcagttgtttgtggggaatgctcttgtggcattgtattctaagtgtgaggaagttgaggtatcgagaagagtgttcgatgaattgcctctgaaagatcttgttagttggaattccatgatttcggggtatgccacgaatggatacccgaatgaggctgttgaaatttttcgtgcaatgatacaaggtcctactacatgcttgcctgaccatgccactctggtttgcgtgcttccggcttgtattgaagcatctgctattgaagttgggttttggattcattcttacattgtgaaggcgagtataaaagttgactctgctttaggcagtgctctcatttcaatgtatgcaaactgtggtcgcgtaagagtttccagagttatctttgatcgagtaagtgataagaatgtggtgctgtggagcgccatgatgaggtgttatggaatgcatgggcacacagacgaggtgctccagatgtttttgcagtttgaggagtccggtttatacccagatgctgttgtggttttgtgtttattgtccacttgtagtcacgcagggatggtttcaaaaggcttggaaatttttgaaaaaatggaagattacggcgtagagaaaaacgagaagcattatgcttgcattgtagaccttctgggaagagctgggttaattgactgggcagtcaagtttattgaaagcatgcccatacaggcagggaaagatgtatacggtgcactacttggagcttgtaggatacataataacatagaacttgctgaagaaactgcagagaaattgtttgttttggatcctggaaatgctgggaggtatattcttctggccagcatgtatgaagatgcagggcgatgggaagatgcagctagagtgaggaggctaatcagagagaagaacatcaagaagccaactggacgtagttcgattgaggtggattgcatatatcacacatttggagctgatgatgagtctcacccatatacagaccagatatttgacacattggagagaatggataggataatggaagaagccatagtaatggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

493

Amino Acids

55.24

Weight (kDa)

5.91

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13960
malus_domestica MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica Prupe.4G126300_v2.0.a1
pyrus_communis pycom05g21580 pycom10g18360
rosa_chinensis RchiOBHm_Chr5g0023171
rosa_laevigata RLG00000032705
rosa_multiflora Rmu_sc0007300.1_g000014
rosa_roxburghii Rroxscaffold_1G00056170
rosa_rugosa Rorug05G0077700
rosa_samantha Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1097
AccI GTMKAC 4 cut(s) 106, 326, 1062, 1143
AccII CGCG 1 cut(s) 783
AclWI GGATC 2 cut(s) 1220, 1233
AcoI YGGCCR 1 cut(s) 1257
AcsI RAATTY 3 cut(s) 532, 585, 999
AcuI CTGAAG 2 cut(s) 291, 1215
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 4 cut(s) 124, 321, 574, 852
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 9 cut(s) 47, 132, 584, 668, 683, 762, 987, 1007, 1112
AjnI CCWGG 1 cut(s) 1228
AluBI AGCT 5 cut(s) 136, 1079, 1163, 1298, 1391
AluI AGCT 5 cut(s) 136, 1079, 1163, 1298, 1391
Alw21I GWGCWC 3 cut(s) 754, 891, 1153
Alw26I GTCTC 1 cut(s) 1407
Alw44I GTGCAC 1 cut(s) 1149
AlwI GGATC 2 cut(s) 1220, 1233
AlwNI CAGNNNCTG 1 cut(s) 935
AoxI GGCC 1 cut(s) 1257
ApaLI GTGCAC 1 cut(s) 1149
ApeKI GCWGC 1 cut(s) 1295
ApoI RAATTY 3 cut(s) 532, 585, 999
ArsI GACNNNNNNTTYG 2 cut(s) 1409, 1441
Asp700I GAANNNNTTC 2 cut(s) 191, 588
AspLEI GCGC 1 cut(s) 845
AspS9I GGNCC 2 cut(s) 260, 608
AsuHPI GGTGA 2 cut(s) 173, 1397
AvaII GGWCC 2 cut(s) 260, 608
BaeGI GKGCMC 2 cut(s) 876, 1153
BalI TGGCCA 1 cut(s) 1259
BamHI GGATCC 1 cut(s) 1225
Bbv12I GWGCWC 3 cut(s) 754, 891, 1153
BbvI GCAGC 1 cut(s) 1307
BccI CCATC 3 cut(s) 362, 973, 1278
BceAI ACGGC 1 cut(s) 1039
BciT130I CCWGG 1 cut(s) 1230
BciVI GTATCC 2 cut(s) 557, 1164
BcoDI GTCTC 1 cut(s) 1407
BfaI CTAG 2 cut(s) 137, 1299
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 2 cut(s) 557, 1164
BglII AGATCT 1 cut(s) 517
BisI GCNGC 1 cut(s) 1296
BlsI GCNGC 1 cut(s) 1297
Bme1390I CCNGG 1 cut(s) 1230
Bme18I GGWCC 2 cut(s) 260, 608
BmgT120I GGNCC 2 cut(s) 260, 608
BmiI GGNNCC 1 cut(s) 1227
BmrFI CCNGG 1 cut(s) 1230
BmrI ACTGGG 1 cut(s) 1102
BmsI GCATC 5 cut(s) 169, 680, 922, 1264, 1282
BmuI ACTGGG 1 cut(s) 1102
BpmI CTGGAG 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 917
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 321, 574, 852
Bse1I ACTGG 2 cut(s) 1097, 1348
Bse3DI GCAATG 3 cut(s) 49, 366, 603
BseBI CCWGG 1 cut(s) 1230
BseGI GGATG 1 cut(s) 984
BseLI CCNNNNNNNGG 4 cut(s) 124, 321, 574, 852
BseMI GCAATG 3 cut(s) 49, 366, 603
BseMII CTCAG 2 cut(s) 198, 293
BseNI ACTGG 2 cut(s) 1097, 1348
BseRI GAGGAG 2 cut(s) 926, 1321
BseSI GKGCMC 2 cut(s) 876, 1153
BseXI GCAGC 1 cut(s) 1307
BseYI CCCAGC 2 cut(s) 1079, 1238
Bsh1236I CGCG 1 cut(s) 783
BshFI GGCC 1 cut(s) 1259
BsiHKAI GWGCWC 3 cut(s) 754, 891, 1153
BsiSI CCGG 2 cut(s) 656, 918
BslI CCNNNNNNNGG 4 cut(s) 124, 321, 574, 852
BsmAI GTCTC 1 cut(s) 1407
BsmI GAATGC 2 cut(s) 445, 870
BsnI GGCC 1 cut(s) 1259
Bsp1286I GDGCHC 4 cut(s) 754, 876, 891, 1153
Bsp143I GATC 4 cut(s) 90, 517, 808, 1225
BspANI GGCC 1 cut(s) 1259
BspCNI CTCAG 2 cut(s) 199, 294
BspFNI CGCG 1 cut(s) 783
BspLI GGNNCC 1 cut(s) 1227
BspMAI CTGCAG 1 cut(s) 1207
BspPI GGATC 2 cut(s) 1220, 1233
BspQI GCTCTTC 1 cut(s) 1069
BspTI CTTAAG 1 cut(s) 344
BsrDI GCAATG 3 cut(s) 49, 366, 603
BsrI ACTGG 2 cut(s) 1097, 1348
BssMI GATC 4 cut(s) 90, 517, 808, 1225
BssNAI GTATAC 2 cut(s) 327, 1144
Bst1107I GTATAC 2 cut(s) 327, 1144
Bst2UI CCWGG 1 cut(s) 1230
Bst4CI ACNGT 2 cut(s) 776, 1148
Bst6I CTCTTC 2 cut(s) 484, 1069
BstAFI CTTAAG 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 5 cut(s) 623, 650, 1054, 1118, 1261
BstDEI CTNAG 3 cut(s) 207, 302, 462
BstF5I GGATG 1 cut(s) 984
BstFNI CGCG 1 cut(s) 783
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 4 cut(s) 93, 520, 811, 1228
BstMAI GTCTC 1 cut(s) 1407
BstMBI GATC 4 cut(s) 90, 517, 808, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 356, 421, 449
BstNI CCWGG 1 cut(s) 1230
BstNSI RCATGY 3 cut(s) 621, 1120, 1267
BstSCI CCNGG 1 cut(s) 1228
BstSFI CTRYAG 1 cut(s) 1203
BstSLI GKGCMC 2 cut(s) 876, 1153
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 1 cut(s) 1307
BstX2I RGATCY 2 cut(s) 517, 1225
BstXI CCANNNNNNTGG 1 cut(s) 1474
BstYI RGATCY 2 cut(s) 517, 1225
BstZ17I GTATAC 2 cut(s) 327, 1144
BsuI GTATCC 2 cut(s) 557, 1164
BsuRI GGCC 1 cut(s) 1259
BtgZI GCGATG 1 cut(s) 1297
BtsCI GGATG 1 cut(s) 984
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 5 cut(s) 623, 650, 1054, 1118, 1261
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 1 cut(s) 845
Cfr13I GGNCC 2 cut(s) 260, 608
Csp6I GTAC 1 cut(s) 148
CviAII CATG 9 cut(s) 232, 392, 538, 618, 632, 847, 869, 1117, 1264
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 3 cut(s) 207, 302, 462
DpnI GATC 4 cut(s) 92, 519, 810, 1227
DpnII GATC 4 cut(s) 90, 517, 808, 1225
DrdI GACNNNNNNGTC 1 cut(s) 1097
DseDI GACNNNNNNGTC 1 cut(s) 1097
EaeI YGGCCR 1 cut(s) 1257
Eam1104I CTCTTC 2 cut(s) 484, 1069
EarI CTCTTC 2 cut(s) 484, 1069
Eco47I GGWCC 2 cut(s) 260, 608
Eco57I CTGAAG 2 cut(s) 291, 1215
EcoO109I RGGNCCY 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 1228
EcoT22I ATGCAT 1 cut(s) 870
FaeI CATG 9 cut(s) 235, 395, 541, 621, 635, 850, 872, 1120, 1267
FatI CATG 9 cut(s) 231, 391, 537, 617, 631, 846, 868, 1116, 1263
FblI GTMKAC 4 cut(s) 106, 326, 1062, 1143
Fnu4HI GCNGC 1 cut(s) 1296
FokI GGATG 1 cut(s) 991
Fsp4HI GCNGC 1 cut(s) 1296
FspBI CTAG 2 cut(s) 137, 1299
GlaI GCGC 1 cut(s) 844
GluI GCNGC 1 cut(s) 1296
GsaI CCCAGC 2 cut(s) 1083, 1242
GsuI CTGGAG 1 cut(s) 875
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 1 cut(s) 1259
HapII CCGG 2 cut(s) 656, 918
HhaI GCGC 1 cut(s) 845
Hin1II CATG 9 cut(s) 235, 395, 541, 621, 635, 850, 872, 1120, 1267
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HinfI GANTC 5 cut(s) 164, 697, 734, 914, 1400
HpaII CCGG 2 cut(s) 656, 918
HphI GGTGA 2 cut(s) 173, 1397
Hpy166II GTNNAC 7 cut(s) 107, 327, 733, 960, 1063, 1144, 1151
Hpy188I TCNGA 3 cut(s) 101, 513, 1319
Hpy188III TCNNGA 5 cut(s) 73, 486, 795, 892, 1333
Hpy8I GTNNAC 7 cut(s) 107, 327, 733, 960, 1063, 1144, 1151
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 181, 709, 1076
HpyCH4III ACNGT 2 cut(s) 776, 1148
HpyCH4IV ACGT 2 cut(s) 150, 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 421, 449
HpyF3I CTNAG 3 cut(s) 207, 302, 462
HpySE526I ACGT 2 cut(s) 150, 1348
Hsp92II CATG 9 cut(s) 235, 395, 541, 621, 635, 850, 872, 1120, 1267
HspAI GCGC 1 cut(s) 843
Kzo9I GATC 4 cut(s) 90, 517, 808, 1225
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 5 cut(s) 356, 840, 894, 1160, 1388
Lsp1109I GCAGC 1 cut(s) 1307
LweI GCATC 5 cut(s) 169, 680, 922, 1264, 1282
MaeI CTAG 2 cut(s) 137, 1299
MaeII ACGT 2 cut(s) 150, 1348
MaeIII GTNAC 2 cut(s) 161, 968
MalI GATC 4 cut(s) 92, 519, 810, 1227
MboI GATC 4 cut(s) 90, 517, 808, 1225
MboII GAAGA 9 cut(s) 501, 1028, 1086, 1208, 1244, 1283, 1301, 1336, 1472
MflI RGATCY 2 cut(s) 517, 1225
MhlI GDGCHC 4 cut(s) 754, 876, 891, 1153
MlsI TGGCCA 1 cut(s) 1259
MluCI AATT 7 cut(s) 200, 503, 532, 585, 999, 1086, 1211
MluNI TGGCCA 1 cut(s) 1259
MlyI GAGTC 4 cut(s) 158, 728, 923, 1409
MmeI TCCRAC 2 cut(s) 79, 509
Mox20I TGGCCA 1 cut(s) 1259
Mph1103I ATGCAT 1 cut(s) 870
MroXI GAANNNNTTC 2 cut(s) 191, 588
MscI TGGCCA 1 cut(s) 1259
MseI TTAA 3 cut(s) 279, 345, 1085
MslI CAYNNNNRTG 2 cut(s) 761, 1472
Msp20I TGGCCA 1 cut(s) 1259
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 656, 918
MspR9I CCNGG 1 cut(s) 1230
Mva1269I GAATGC 2 cut(s) 445, 870
MvaI CCWGG 1 cut(s) 1230
MvnI CGCG 1 cut(s) 783
MwoI GCNNNNNNNGC 3 cut(s) 356, 421, 449
NdeII GATC 4 cut(s) 90, 517, 808, 1225
NlaIII CATG 9 cut(s) 235, 395, 541, 621, 635, 850, 872, 1120, 1267
NlaIV GGNNCC 1 cut(s) 1227
NmuCI GTSAC 2 cut(s) 161, 968
NsiI ATGCAT 1 cut(s) 870
NspI RCATGY 3 cut(s) 621, 1120, 1267
PaeI GCATGC 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 1069
PctI GAATGC 2 cut(s) 445, 870
PdmI GAANNNNTTC 2 cut(s) 191, 588
PfeI GAWTC 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 1228
PkrI GCNGC 1 cut(s) 1297
PleI GAGTC 4 cut(s) 158, 728, 922, 1408
PpsI GAGTC 4 cut(s) 158, 728, 922, 1408
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 608
Psp5II RGGWCCY 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 1228
PspFI CCCAGC 2 cut(s) 1079, 1238
PspGI CCWGG 1 cut(s) 1228
PspN4I GGNNCC 1 cut(s) 1227
PspPI GGNCC 2 cut(s) 260, 608
PspPPI RGGWCCY 1 cut(s) 608
PstI CTGCAG 1 cut(s) 1207
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 2 cut(s) 517, 1225
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 761, 1472
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 3 cut(s) 279, 345, 1085
SatI GCNGC 1 cut(s) 1296
Sau3AI GATC 4 cut(s) 90, 517, 808, 1225
Sau96I GGNCC 2 cut(s) 260, 608
SchI GAGTC 4 cut(s) 158, 728, 923, 1409
ScrFI CCNGG 1 cut(s) 1230
SduI GDGCHC 4 cut(s) 754, 876, 891, 1153
SfaNI GCATC 5 cut(s) 169, 680, 922, 1264, 1282
SfcI CTRYAG 1 cut(s) 1203
SinI GGWCC 2 cut(s) 260, 608
SmiMI CAYNNNNRTG 2 cut(s) 761, 1472
SmlI CTYRAG 2 cut(s) 166, 344
SmoI CTYRAG 2 cut(s) 166, 344
SphI GCATGC 1 cut(s) 1120
Sse9I AATT 7 cut(s) 200, 503, 532, 585, 999, 1086, 1211
SspMI CTAG 2 cut(s) 137, 1299
StyD4I CCNGG 1 cut(s) 1228
TaaI ACNGT 2 cut(s) 776, 1148
TaiI ACGT 2 cut(s) 153, 1351
TaqI TCGA 5 cut(s) 195, 485, 498, 811, 1355
TasI AATT 7 cut(s) 200, 503, 532, 585, 999, 1086, 1211
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 3 cut(s) 279, 345, 1085
Tru9I TTAA 3 cut(s) 279, 345, 1085
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 2 cut(s) 161, 968
TseI GCWGC 1 cut(s) 1295
Tsp45I GTSAC 2 cut(s) 161, 968
TspDTI ATGAA 6 cut(s) 17, 213, 380, 516, 689, 1284
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 1149
VpaK11BI GGWCC 2 cut(s) 260, 608
XapI RAATTY 3 cut(s) 532, 585, 999
XceI RCATGY 3 cut(s) 621, 1120, 1267
XmiI GTMKAC 4 cut(s) 106, 326, 1062, 1143
XmnI GAANNNNTTC 2 cut(s) 191, 588
XspI CTAG 2 cut(s) 137, 1299
Zsp2I ATGCAT 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.