Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014691

Physical Location & Seq

Genomic Coordinates Forward (+)

31605714 .. 31606259

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1217700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAGCTGCACGGAAGGTGTTTGATAAATTGCTTGAGAGAGACGTTTTTGTGCGGAACATGGTTATTCAGGGTTATGCAAATGTGGGTCCTTTGGTTGAAGCCCTCAATATGTATGATAGAATTCGGTTCAGTGGTGTACCTGCAAACCGGTACACGTACCCTTTTATGCTCAAGGCTTGCGGTGCAATGAGAGATGGAAAACGAGGTCGGATTGTTCATGGACATGTCGTGAAATGTGGACTCGACTCGGATTTGTTTGTTGGGAATGCTCTTATTGCCTTGTATTCCAAGTGTGAGGAGATTGAGACATCTAGAAGAGTGTTCGATGAATTACCTGAGAAAGATTCTGTTAGTTGGAATTCCATGATTCCGGGGTACACGGCAAGTGGGAATCCTCGTGAAGCTCTCATGGTTTTTCGTTCCATGCTGCAAGATCATGCCACATGCTTGCCTGACCATGCCACTCTTGTTTGCATTCCTCCTGCTTGTTTTGAAGCATCGGCTATTGAAGTTGAACTTTGGATTCATTCTTACATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

182

Amino Acids

20.38

Weight (kDa)

6.2

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	15 - 61	2.1e-07	PPR repeat family
PPR_2	PF13041	115 - 156	3.8e-06	PPR repeat family
PPR	PF01535	118 - 145	1e-05	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13960
malus_domestica	MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica	Prupe.4G126300_v2.0.a1
pyrus_communis	pycom05g21580 pycom10g18360
rosa_chinensis	RchiOBHm_Chr5g0023171
rosa_laevigata	RLG00000032705
rosa_multiflora	Rmu_sc0007300.1_g000014
rosa_roxburghii	Rroxscaffold_1G00056170
rosa_rugosa	Rorug05G0077700
rosa_samantha	Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana	Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	2 cut(s)	55, 183
AcsI	RAATTY	2 cut(s)	123, 361
AfaI	GTAC	4 cut(s)	141, 155, 161, 380
AflIII	ACRYGT	2 cut(s)	156, 226
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	101, 497, 512, 518
AluBI	AGCT	2 cut(s)	8, 407
AluI	AGCT	2 cut(s)	8, 407
Alw26I	GTCTC	2 cut(s)	36, 302
ApeKI	GCWGC	2 cut(s)	8, 430
ApoI	RAATTY	2 cut(s)	123, 361
AsiGI	ACCGGT	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	36, 302
BfaI	CTAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	9, 431
BlsI	GCNGC	2 cut(s)	10, 432
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	56, 158
BpuMI	CCSGG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	374
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	417
BshTI	ACCGGT	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	151, 374
BsmAI	GTCTC	2 cut(s)	36, 302
BsmBI	CGTCTC	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	274, 477
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	55, 183
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	436
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	181, 452
BstDEI	CTNAG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	2 cut(s)	36, 302
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 278
BstNSI	RCATGY	2 cut(s)	230, 450
BstSCI	CCNGG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	181, 452
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	140, 154, 160, 379
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	9 cut(s)	61, 221, 227, 367, 412, 427, 440, 447, 461
CviJI	RGCY	5 cut(s)	8, 104, 179, 407, 506
CviKI_1	RGCY	5 cut(s)	8, 104, 179, 407, 506
CviQI	GTAC	4 cut(s)	140, 154, 160, 379
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRI	GAATTC	2 cut(s)	123, 361
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	9 cut(s)	64, 224, 230, 370, 415, 430, 443, 450, 464
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	9 cut(s)	60, 220, 226, 366, 411, 426, 439, 446, 460
Fnu4HI	GCNGC	2 cut(s)	9, 431
Fsp4HI	GCNGC	2 cut(s)	9, 431
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	9, 431
HapII	CCGG	2 cut(s)	151, 374
Hin1II	CATG	9 cut(s)	64, 224, 230, 370, 415, 430, 443, 450, 464
HinfI	GANTC	6 cut(s)	243, 248, 347, 370, 394, 526
HpaII	CCGG	2 cut(s)	151, 374
Hpy166II	GTNNAC	4 cut(s)	140, 156, 242, 381
Hpy188I	TCNGA	2 cut(s)	213, 253
Hpy188III	TCNNGA	3 cut(s)	232, 315, 401
Hpy8I	GTNNAC	4 cut(s)	140, 156, 242, 381
HpyAV	CCTTC	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	45, 158
HpyCH4V	TGCA	6 cut(s)	11, 80, 146, 188, 433, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 278
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	2 cut(s)	45, 158
Hsp92II	CATG	9 cut(s)	64, 224, 230, 370, 415, 430, 443, 450, 464
Kzo9I	GATC	1 cut(s)	436
LpnPI	CCDG	7 cut(s)	56, 156, 164, 351, 387, 468, 498
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	45, 158
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	1 cut(s)	330
MluCI	AATT	4 cut(s)	29, 123, 332, 361
MlyI	GAGTC	2 cut(s)	237, 242
MmeI	TCCRAC	2 cut(s)	191, 338
MnlI	CCTC	5 cut(s)	116, 200, 292, 408, 492
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	2 cut(s)	151, 374
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	2 cut(s)	274, 477
MwoI	GCNNNNNNNGC	2 cut(s)	185, 278
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	9 cut(s)	64, 224, 230, 370, 415, 430, 443, 450, 464
NlaIV	GGNNCC	1 cut(s)	90
NspI	RCATGY	2 cut(s)	230, 450
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	2 cut(s)	274, 477
PfeI	GAWTC	4 cut(s)	347, 370, 394, 526
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	10, 432
PleI	GAGTC	2 cut(s)	237, 242
PpsI	GAGTC	2 cut(s)	237, 242
Ppu21I	YACGTR	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	89
PscI	ACATGT	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
RsaI	GTAC	4 cut(s)	141, 155, 161, 380
RsaNI	GTAC	4 cut(s)	140, 154, 160, 379
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	2 cut(s)	9, 431
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	237, 242
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	8 cut(s)	10, 21, 48, 145, 161, 211, 340, 409
SfaNI	GCATC	1 cut(s)	509
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	35, 173
SmoI	CTYRAG	2 cut(s)	35, 173
Sse9I	AATT	4 cut(s)	29, 123, 332, 361
SsiI	CCGC	2 cut(s)	55, 183
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	373
TaiI	ACGT	2 cut(s)	48, 161
TaqI	TCGA	2 cut(s)	246, 327
TasI	AATT	4 cut(s)	29, 123, 332, 361
TfiI	GAWTC	4 cut(s)	347, 370, 394, 526
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	8, 430
TspDTI	ATGAA	3 cut(s)	209, 345, 518
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	2 cut(s)	123, 361
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	2 cut(s)	230, 450
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.