Prupe.4G126300_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014691
Physical Location & Seq
Reverse (-)
6933597 .. 6935081
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G126300.1

Sequence Viewer

Length: 1485 bp
ATGACCCCTCATTACTACAGAGACTCTTATCACTATACCTACTTGCTAAAACACTGTAGAAGCACCAAATCAATCAAAAAACTGCATGCCCAGATAATCATCGGAGGTTTTGAGCAAAACCCATTTGTTGTTGCGAAGATAGTTGGCAAGTATGTTGAGTGCAGTGAACCAAGCATGGAAACTGCACGGAAGGTGTTTGATAGGTTGTTGGAGAGAGACGTTTTTGTGTGGAACATGGTTATTCAGGGTTATGCAAATGTGGAGCCTTTTGTTGAAGCACTTAAAATGTATAATAGAATGAGGTTGAGTGGTGTGCCTGCAAACCAGTACACATACCCTTTTGTGCTCAAGGCTTGTGGTGCAATGAAAGATGGAAAGCATGGTCAGATTGTTCATGGACATGTTGTGAAATGTGGGCTTCATTCAGATTTGTTTGTTGGGAATGCTCTTATAGCCTTGTATTCTAAGTGTGAGGAAATTGAGATATCAAGAAGAGTATTTGATGAAATCCCTTGGAAAGATTCTGTTAGTTGGAATTCCATGATTTCGGGGTATACGGCAAATGGATATCCGCATGAGGCTCTCATGCTTTTCCGTGCTATGTTGCAAGATCATGCCACAAGCTTGCCTGATCATGCCACTCTTGTTTCCATTCTTCCAGCTTGTGTTCAAGCATCAGCCATCGAAGTGGGCTTTTGGATTCACTCTTACACTATAAAGTCAAGTGTGGAAGTTGATGCTGCTTTGGGCAGCGCTCTCATTTCTATGTACGCAAGTTGTGGCCGTGTAACCATTGCCAGATTTATTTTTGATCAAATCAGCGAAAAAAACGTAGTGTTGTGGAGCGCAATGATGAGGTGTTATGGAATGCATGGACATGCAGATGAGGCACTCCAAATGTTTTCCCAGTTTGTGGAGTCCGGCTTACACCCAGATGGTGTTGTATTTTTGTGTTTGTTGTCCACTTGTAGTCACTCAGGGATGGTTACGAAAGGCCTGGAACTTTTCGAGGAAATGGGAGATTATGGAGTAGAGAAAAACGAGAAACATTATGCTTGTGTAGTAGACCTTCTGGGAAGAGCTGGGTTACTTGACCAGGCGGTCAAGCTTATTGAGAGCATGCCCATGCAGGCAGGGAAAGATGTATATGGTGCCTTACTCGGAGCTTGTAGAATACATAATAACATAGAGCTCGCCGAAGAAGCTGCAGAGAAGTTGTTTGTTTTGGACCCAGAAAATGCTGGGAGGTATATTCTTCTGGCCAGCATGTATGAAGATGCATGTAGATGGGAGGATGCAGCTAGAGTGAGGAAGCTACTAAGAGATAAGAACGTCAAGAAGCCAACCGGAAGTAGTTCAATTGAGATGGATTGCACATACCACACATTTGGAGCAGATGATGAGTCTCACCCATATACAGACCAGATTTTCAACACATTGGAGAGATTGGATCGGATAATTGAAGACCAAACAGTAATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

495

Amino Acids

55.57

Weight (kDa)

5.86

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13960
malus_domestica MD05G1239500.v1.1 MD10G1217700.v1.1
prunus_persica Prupe.4G126300_v2.0.a1
pyrus_communis pycom05g21580 pycom10g18360
rosa_chinensis RchiOBHm_Chr5g0023171
rosa_laevigata RLG00000032705
rosa_multiflora Rmu_sc0007300.1_g000014
rosa_roxburghii Rroxscaffold_1G00056170
rosa_rugosa Rorug05G0077700
rosa_samantha Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600
rosa_wichuraiana Rw0G018300 Rw5G014790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1100
AccB1I GGYRCC 1 cut(s) 1151
AccB7I CCANNNNNTGG 1 cut(s) 913
AccI GTMKAC 2 cut(s) 554, 1065
AciI CCGC 2 cut(s) 572, 1100
AclWI GGATC 1 cut(s) 1458
AcoI YGGCCR 2 cut(s) 781, 1260
AcsI RAATTY 1 cut(s) 535
AfaI GTAC 2 cut(s) 329, 770
AfeI AGCGCT 1 cut(s) 754
AfiI CCNNNNNNNGG 1 cut(s) 913
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 5 cut(s) 275, 671, 1359, 1432, 1463
AjnI CCWGG 2 cut(s) 996, 1095
AluBI AGCT 9 cut(s) 624, 662, 1082, 1108, 1166, 1192, 1205, 1301, 1315
AluI AGCT 9 cut(s) 624, 662, 1082, 1108, 1166, 1192, 1205, 1301, 1315
Alw21I GWGCWC 2 cut(s) 348, 1194
Alw26I GTCTC 3 cut(s) 15, 210, 1410
AlwI GGATC 1 cut(s) 1458
Aor51HI AGCGCT 1 cut(s) 754
AoxI GGCC 3 cut(s) 781, 994, 1260
ApeKI GCWGC 4 cut(s) 740, 750, 1205, 1298
ApoI RAATTY 1 cut(s) 535
Asp700I GAANNNNTTC 1 cut(s) 1354
AspLEI GCGC 2 cut(s) 755, 848
AspS9I GGNCC 1 cut(s) 1228
AsuHPI GGTGA 1 cut(s) 1400
AvaII GGWCC 1 cut(s) 1228
BalI TGGCCA 1 cut(s) 1262
BanI GGYRCC 1 cut(s) 1151
BanII GRGCYC 1 cut(s) 1194
BarI GAAGNNNNNNTAC 2 cut(s) 1053, 1085
BbsI GAAGAC 1 cut(s) 1470
Bbv12I GWGCWC 2 cut(s) 348, 1194
BbvI GCAGC 4 cut(s) 727, 762, 1192, 1310
BccI CCATC 6 cut(s) 365, 689, 929, 976, 1281, 1360
BceAI ACGGC 2 cut(s) 573, 768
BcgI CGANNNNNNTGC 2 cut(s) 1187, 1221
BciT130I CCWGG 2 cut(s) 998, 1097
BclI TGATCA 2 cut(s) 631, 811
BcoDI GTCTC 3 cut(s) 15, 210, 1410
BfaI CTAG 1 cut(s) 1302
BfmI CTRYAG 3 cut(s) 16, 55, 1206
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 4 cut(s) 741, 751, 1206, 1299
BlsI GCNGC 4 cut(s) 742, 752, 1207, 1300
Bme1390I CCNGG 2 cut(s) 998, 1097
Bme18I GGWCC 1 cut(s) 1228
BmgT120I GGNCC 1 cut(s) 1228
BmiI GGNNCC 3 cut(s) 264, 1153, 1230
BmrFI CCNGG 2 cut(s) 998, 1097
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 4 cut(s) 683, 727, 1267, 1285
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 1470
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 1346
Bsc4I CCNNNNNNNGG 1 cut(s) 913
Bse1I ACTGG 2 cut(s) 325, 907
Bse3DI GCAATG 3 cut(s) 369, 792, 855
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 2 cut(s) 998, 1097
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 987, 1300
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 913
BseMI GCAATG 3 cut(s) 369, 792, 855
BseMII CTCAG 1 cut(s) 990
BseNI ACTGG 2 cut(s) 325, 907
BseXI GCAGC 4 cut(s) 727, 762, 1192, 1310
BseYI CCCAGC 2 cut(s) 1082, 1241
BsgI GTGCAG 2 cut(s) 168, 181
BshFI GGCC 3 cut(s) 783, 996, 1262
BshNI GGYRCC 1 cut(s) 1151
BsiHKAI GWGCWC 2 cut(s) 348, 1194
BsiSI CCGG 2 cut(s) 921, 1347
BslI CCNNNNNNNGG 1 cut(s) 913
BsmAI GTCTC 3 cut(s) 15, 210, 1410
BsmBI CGTCTC 1 cut(s) 210
BsmI GAATGC 2 cut(s) 448, 873
BsnI GGCC 3 cut(s) 783, 996, 1262
Bsp1286I GDGCHC 2 cut(s) 348, 1194
Bsp143I GATC 4 cut(s) 610, 631, 811, 1450
BspACI CCGC 2 cut(s) 572, 1100
BspANI GGCC 3 cut(s) 783, 996, 1262
BspCNI CTCAG 1 cut(s) 989
BspLI GGNNCC 3 cut(s) 264, 1153, 1230
BspMAI CTGCAG 1 cut(s) 1210
BspPI GGATC 1 cut(s) 1458
BspQI GCTCTTC 1 cut(s) 1072
BspT107I GGYRCC 1 cut(s) 1151
BsrDI GCAATG 3 cut(s) 369, 792, 855
BsrI ACTGG 2 cut(s) 325, 907
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 4 cut(s) 610, 631, 811, 1450
BssNAI GTATAC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 512
Bst1107I GTATAC 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 998, 1097
Bst4CI ACNGT 2 cut(s) 56, 1474
Bst6I CTCTTC 2 cut(s) 487, 1072
BstC8I GCNNGC 7 cut(s) 87, 318, 626, 1121, 1131, 1194, 1264
BstDEI CTNAG 3 cut(s) 465, 976, 1319
BstF5I GGATG 2 cut(s) 987, 1300
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 2 cut(s) 755, 848
BstKTI GATC 4 cut(s) 613, 634, 814, 1453
BstMAI GTCTC 3 cut(s) 15, 210, 1410
BstMBI GATC 4 cut(s) 610, 631, 811, 1450
BstMWI GCNNNNNNNGC 4 cut(s) 359, 452, 887, 1202
BstNI CCWGG 2 cut(s) 998, 1097
BstNSI RCATGY 6 cut(s) 89, 404, 881, 1123, 1270, 1284
BstSCI CCNGG 2 cut(s) 996, 1095
BstSFI CTRYAG 3 cut(s) 16, 55, 1206
BstV1I GCAGC 4 cut(s) 727, 762, 1192, 1310
BstV2I GAAGAC 1 cut(s) 1470
BstXI CCANNNNNNTGG 2 cut(s) 688, 1388
BstZ17I GTATAC 1 cut(s) 555
BsuRI GGCC 3 cut(s) 783, 996, 1262
BtsCI GGATG 2 cut(s) 987, 1300
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 52, 169
Cac8I GCNNGC 7 cut(s) 87, 318, 626, 1121, 1131, 1194, 1264
CfoI GCGC 2 cut(s) 755, 848
Cfr13I GGNCC 1 cut(s) 1228
Csp6I GTAC 2 cut(s) 328, 769
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviQI GTAC 2 cut(s) 328, 769
DdeI CTNAG 3 cut(s) 465, 976, 1319
DpnI GATC 4 cut(s) 612, 633, 813, 1452
DpnII GATC 4 cut(s) 610, 631, 811, 1450
DrdI GACNNNNNNGTC 1 cut(s) 1100
DseDI GACNNNNNNGTC 1 cut(s) 1100
EaeI YGGCCR 2 cut(s) 781, 1260
Eam1104I CTCTTC 2 cut(s) 487, 1072
EarI CTCTTC 2 cut(s) 487, 1072
Ecl136II GAGCTC 1 cut(s) 1192
Eco130I CCWWGG 1 cut(s) 512
Eco147I AGGCCT 1 cut(s) 996
Eco24I GRGCYC 1 cut(s) 1194
Eco32I GATATC 2 cut(s) 486, 569
Eco47I GGWCC 1 cut(s) 1228
Eco47III AGCGCT 1 cut(s) 754
Eco53kI GAGCTC 1 cut(s) 1192
EcoICRI GAGCTC 1 cut(s) 1192
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 996, 1095
EcoRV GATATC 2 cut(s) 486, 569
EcoT14I CCWWGG 1 cut(s) 512
EcoT22I ATGCAT 2 cut(s) 873, 1282
EcoT38I GRGCYC 1 cut(s) 1194
ErhI CCWWGG 1 cut(s) 512
Esp3I CGTCTC 1 cut(s) 210
FbaI TGATCA 2 cut(s) 631, 811
FblI GTMKAC 2 cut(s) 554, 1065
Fnu4HI GCNGC 4 cut(s) 741, 751, 1206, 1299
FokI GGATG 2 cut(s) 994, 1307
FriOI GRGCYC 1 cut(s) 1194
Fsp4HI GCNGC 4 cut(s) 741, 751, 1206, 1299
FspBI CTAG 1 cut(s) 1302
GlaI GCGC 2 cut(s) 754, 847
GluI GCNGC 4 cut(s) 741, 751, 1206, 1299
GsaI CCCAGC 2 cut(s) 1086, 1245
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 3 cut(s) 783, 996, 1262
HapII CCGG 2 cut(s) 921, 1347
HhaI GCGC 2 cut(s) 755, 848
Hin6I GCGC 2 cut(s) 753, 846
HinP1I GCGC 2 cut(s) 753, 846
HindIII AAGCTT 2 cut(s) 622, 1106
HinfI GANTC 5 cut(s) 23, 521, 700, 917, 1403
HpaII CCGG 2 cut(s) 921, 1347
HphI GGTGA 1 cut(s) 1400
Hpy166II GTNNAC 5 cut(s) 167, 330, 555, 963, 1066
Hpy188I TCNGA 5 cut(s) 104, 387, 427, 1163, 1455
Hpy188III TCNNGA 2 cut(s) 489, 1336
Hpy8I GTNNAC 5 cut(s) 167, 330, 555, 963, 1066
HpyAV CCTTC 2 cut(s) 184, 1079
HpyCH4III ACNGT 2 cut(s) 56, 1474
HpyCH4IV ACGT 3 cut(s) 219, 831, 1332
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 452, 887, 1202
HpyF3I CTNAG 3 cut(s) 465, 976, 1319
HpySE526I ACGT 3 cut(s) 219, 831, 1332
HspAI GCGC 2 cut(s) 753, 846
Ksp22I TGATCA 2 cut(s) 631, 811
Kzo9I GATC 4 cut(s) 610, 631, 811, 1450
LguI GCTCTTC 1 cut(s) 1072
LmnI GCTCC 4 cut(s) 262, 843, 1163, 1391
Lsp1109I GCAGC 4 cut(s) 727, 762, 1192, 1310
LweI GCATC 4 cut(s) 683, 727, 1267, 1285
MaeI CTAG 1 cut(s) 1302
MaeII ACGT 3 cut(s) 219, 831, 1332
MaeIII GTNAC 4 cut(s) 787, 971, 985, 1086
MalI GATC 4 cut(s) 612, 633, 813, 1452
MboI GATC 4 cut(s) 610, 631, 811, 1450
MboII GAAGA 8 cut(s) 148, 504, 647, 1089, 1211, 1247, 1286, 1475
MfeI CAATTG 1 cut(s) 1359
MhlI GDGCHC 2 cut(s) 348, 1194
MlsI TGGCCA 1 cut(s) 1262
MluCI AATT 4 cut(s) 477, 535, 1359, 1458
MluNI TGGCCA 1 cut(s) 1262
MlyI GAGTC 3 cut(s) 17, 926, 1412
MmeI TCCRAC 2 cut(s) 189, 512
Mox20I TGGCCA 1 cut(s) 1262
Mph1103I ATGCAT 2 cut(s) 873, 1282
MroXI GAANNNNTTC 1 cut(s) 1354
MscI TGGCCA 1 cut(s) 1262
MseI TTAA 2 cut(s) 282, 1483
MslI CAYNNNNRTG 8 cut(s) 399, 686, 764, 876, 882, 933, 1124, 1285
Msp20I TGGCCA 1 cut(s) 1262
MspI CCGG 2 cut(s) 921, 1347
MspR9I CCNGG 2 cut(s) 998, 1097
MunI CAATTG 1 cut(s) 1359
Mva1269I GAATGC 2 cut(s) 448, 873
MvaI CCWGG 2 cut(s) 998, 1097
MwoI GCNNNNNNNGC 4 cut(s) 359, 452, 887, 1202
NdeII GATC 4 cut(s) 610, 631, 811, 1450
NlaIV GGNNCC 3 cut(s) 264, 1153, 1230
NmuCI GTSAC 1 cut(s) 971
NsiI ATGCAT 2 cut(s) 873, 1282
NspI RCATGY 6 cut(s) 89, 404, 881, 1123, 1270, 1284
PaeI GCATGC 2 cut(s) 89, 1123
PceI AGGCCT 1 cut(s) 996
PciI ACATGT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 1072
PctI GAATGC 2 cut(s) 448, 873
PdmI GAANNNNTTC 1 cut(s) 1354
PfeI GAWTC 2 cut(s) 521, 700
PflMI CCANNNNNTGG 1 cut(s) 913
PkrI GCNGC 4 cut(s) 742, 752, 1207, 1300
PleI GAGTC 3 cut(s) 17, 925, 1411
PpsI GAGTC 3 cut(s) 17, 925, 1411
PscI ACATGT 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 1194
Psp6I CCWGG 2 cut(s) 996, 1095
PspFI CCCAGC 2 cut(s) 1082, 1241
PspGI CCWGG 2 cut(s) 996, 1095
PspN4I GGNNCC 3 cut(s) 264, 1153, 1230
PspPI GGNCC 1 cut(s) 1228
PstI CTGCAG 1 cut(s) 1210
RsaI GTAC 2 cut(s) 329, 770
RsaNI GTAC 2 cut(s) 328, 769
RseI CAYNNNNRTG 8 cut(s) 399, 686, 764, 876, 882, 933, 1124, 1285
SacI GAGCTC 1 cut(s) 1194
SapI GCTCTTC 1 cut(s) 1072
SaqAI TTAA 2 cut(s) 282, 1483
SatI GCNGC 4 cut(s) 741, 751, 1206, 1299
Sau3AI GATC 4 cut(s) 610, 631, 811, 1450
Sau96I GGNCC 1 cut(s) 1228
SchI GAGTC 3 cut(s) 17, 926, 1412
ScrFI CCNGG 2 cut(s) 998, 1097
SduI GDGCHC 2 cut(s) 348, 1194
SfaNI GCATC 4 cut(s) 683, 727, 1267, 1285
SfcI CTRYAG 3 cut(s) 16, 55, 1206
SinI GGWCC 1 cut(s) 1228
SmiMI CAYNNNNRTG 8 cut(s) 399, 686, 764, 876, 882, 933, 1124, 1285
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SphI GCATGC 2 cut(s) 89, 1123
Sse9I AATT 4 cut(s) 477, 535, 1359, 1458
SseBI AGGCCT 1 cut(s) 996
SsiI CCGC 2 cut(s) 572, 1100
SspMI CTAG 1 cut(s) 1302
SstI GAGCTC 1 cut(s) 1194
StuI AGGCCT 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 996, 1095
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 2 cut(s) 56, 1474
TaiI ACGT 3 cut(s) 222, 834, 1335
TaqI TCGA 2 cut(s) 684, 1008
TasI AATT 4 cut(s) 477, 535, 1359, 1458
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 2 cut(s) 521, 700
Tru1I TTAA 2 cut(s) 282, 1483
Tru9I TTAA 2 cut(s) 282, 1483
TscAI CASTG 2 cut(s) 59, 169
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 4 cut(s) 740, 750, 1205, 1298
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 5 cut(s) 380, 383, 410, 519, 1287
TspGWI ACGGA 2 cut(s) 202, 584
TspRI CASTG 2 cut(s) 59, 169
Van91I CCANNNNNTGG 1 cut(s) 913
VpaK11BI GGWCC 1 cut(s) 1228
XapI RAATTY 1 cut(s) 535
XceI RCATGY 6 cut(s) 89, 404, 881, 1123, 1270, 1284
XmiI GTMKAC 2 cut(s) 554, 1065
XmnI GAANNNNTTC 1 cut(s) 1354
XspI CTAG 1 cut(s) 1302
Zsp2I ATGCAT 2 cut(s) 873, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.