Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g13960 |
| malus_domestica | MD05G1239500.v1.1 MD10G1217700.v1.1 |
| prunus_persica | Prupe.4G126300_v2.0.a1 |
| pyrus_communis | pycom05g21580 pycom10g18360 |
| rosa_chinensis | RchiOBHm_Chr5g0023171 |
| rosa_laevigata | RLG00000032705 |
| rosa_multiflora | Rmu_sc0007300.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00056170 |
| rosa_rugosa | Rorug05G0077700 |
| rosa_samantha | Rh5AG163900 Rh5BG163200 Rh5CG178200 Rh5DG164600 |
| rosa_wichuraiana | Rw0G018300 Rw5G014790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 199, 419 |
| AccII | CGCG | 1 cut(s) | 876 |
| AcsI | RAATTY | 3 cut(s) | 625, 678, 1009 |
| AfaI | GTAC | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 217, 414, 667, 945 |
| AflII | CTTAAG | 1 cut(s) | 437 |
| AgsI | TTSAA | 7 cut(s) | 140, 225, 677, 761, 776, 855, 997 |
| AluBI | AGCT | 3 cut(s) | 14, 28, 229 |
| AluI | AGCT | 3 cut(s) | 14, 28, 229 |
| Alw21I | GWGCWC | 1 cut(s) | 847 |
| AoxI | GGCC | 1 cut(s) | 366 |
| ApoI | RAATTY | 3 cut(s) | 625, 678, 1009 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 284, 681 |
| AspLEI | GCGC | 1 cut(s) | 938 |
| AspS9I | GGNCC | 3 cut(s) | 353, 367, 701 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| AvaII | GGWCC | 2 cut(s) | 353, 701 |
| BaeGI | GKGCMC | 1 cut(s) | 969 |
| Bbv12I | GWGCWC | 1 cut(s) | 847 |
| BbvCI | CCTCAGC | 1 cut(s) | 363 |
| BccI | CCATC | 2 cut(s) | 455, 983 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 30, 64 |
| BciVI | GTATCC | 1 cut(s) | 650 |
| BfaI | CTAG | 2 cut(s) | 15, 230 |
| BfoI | RGCGCY | 1 cut(s) | 939 |
| BfrI | CTTAAG | 1 cut(s) | 437 |
| BfuI | GTATCC | 1 cut(s) | 650 |
| BglII | AGATCT | 1 cut(s) | 610 |
| Bme18I | GGWCC | 2 cut(s) | 353, 701 |
| BmgT120I | GGNCC | 3 cut(s) | 353, 367, 701 |
| BmsI | GCATC | 2 cut(s) | 262, 773 |
| Bpu10I | CCTNAGC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 244 |
| BsaAI | YACGTR | 1 cut(s) | 244 |
| BsaBI | GATNNNNATC | 1 cut(s) | 188 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 217, 414, 667, 945 |
| Bse3DI | GCAATG | 3 cut(s) | 142, 459, 696 |
| Bse8I | GATNNNNATC | 1 cut(s) | 188 |
| BseGI | GGATG | 1 cut(s) | 994 |
| BseJI | GATNNNNATC | 1 cut(s) | 188 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 217, 414, 667, 945 |
| BseMI | GCAATG | 3 cut(s) | 142, 459, 696 |
| BseMII | CTCAG | 3 cut(s) | 291, 354, 386 |
| BseSI | GKGCMC | 1 cut(s) | 969 |
| Bsh1236I | CGCG | 1 cut(s) | 876 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 847 |
| BsiSI | CCGG | 1 cut(s) | 749 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 217, 414, 667, 945 |
| BsmI | GAATGC | 3 cut(s) | 53, 538, 963 |
| BsnI | GGCC | 1 cut(s) | 368 |
| Bsp1286I | GDGCHC | 2 cut(s) | 847, 969 |
| Bsp143I | GATC | 3 cut(s) | 183, 610, 901 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspCNI | CTCAG | 3 cut(s) | 292, 355, 387 |
| BspFNI | CGCG | 1 cut(s) | 876 |
| BspTI | CTTAAG | 1 cut(s) | 437 |
| BsrDI | GCAATG | 3 cut(s) | 142, 459, 696 |
| BssMI | GATC | 3 cut(s) | 183, 610, 901 |
| BssNAI | GTATAC | 1 cut(s) | 420 |
| Bst1107I | GTATAC | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 1 cut(s) | 869 |
| Bst6I | CTCTTC | 1 cut(s) | 577 |
| BstAFI | CTTAAG | 1 cut(s) | 437 |
| BstBAI | YACGTR | 1 cut(s) | 244 |
| BstC8I | GCNNGC | 2 cut(s) | 716, 743 |
| BstDEI | CTNAG | 4 cut(s) | 300, 363, 395, 555 |
| BstF5I | GGATG | 1 cut(s) | 994 |
| BstFNI | CGCG | 1 cut(s) | 876 |
| BstH2I | RGCGCY | 1 cut(s) | 939 |
| BstHHI | GCGC | 1 cut(s) | 938 |
| BstKTI | GATC | 3 cut(s) | 186, 613, 904 |
| BstMBI | GATC | 3 cut(s) | 183, 610, 901 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 20, 449, 514, 542 |
| BstNSI | RCATGY | 1 cut(s) | 714 |
| BstSLI | GKGCMC | 1 cut(s) | 969 |
| BstUI | CGCG | 1 cut(s) | 876 |
| BstX2I | RGATCY | 1 cut(s) | 610 |
| BstYI | RGATCY | 1 cut(s) | 610 |
| BstZ17I | GTATAC | 1 cut(s) | 420 |
| BsuI | GTATCC | 1 cut(s) | 650 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 994 |
| BtsI | GCAGTG | 1 cut(s) | 847 |
| BtsIMutI | CAGTG | 1 cut(s) | 847 |
| Cac8I | GCNNGC | 2 cut(s) | 716, 743 |
| CfoI | GCGC | 1 cut(s) | 938 |
| Cfr13I | GGNCC | 3 cut(s) | 353, 367, 701 |
| Csp6I | GTAC | 1 cut(s) | 241 |
| CviAII | CATG | 7 cut(s) | 325, 485, 631, 711, 725, 940, 962 |
| CviQI | GTAC | 1 cut(s) | 241 |
| DdeI | CTNAG | 4 cut(s) | 300, 363, 395, 555 |
| DpnI | GATC | 3 cut(s) | 185, 612, 903 |
| DpnII | GATC | 3 cut(s) | 183, 610, 901 |
| Eam1104I | CTCTTC | 1 cut(s) | 577 |
| EarI | CTCTTC | 1 cut(s) | 577 |
| Eco47I | GGWCC | 2 cut(s) | 353, 701 |
| EcoO109I | RGGNCCY | 2 cut(s) | 367, 701 |
| EcoRI | GAATTC | 1 cut(s) | 625 |
| EcoT22I | ATGCAT | 1 cut(s) | 963 |
| FaeI | CATG | 7 cut(s) | 328, 488, 634, 714, 728, 943, 965 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 12, 44 |
| FatI | CATG | 7 cut(s) | 324, 484, 630, 710, 724, 939, 961 |
| FauNDI | CATATG | 1 cut(s) | 214 |
| FblI | GTMKAC | 2 cut(s) | 199, 419 |
| FokI | GGATG | 1 cut(s) | 1001 |
| FspBI | CTAG | 2 cut(s) | 15, 230 |
| GlaI | GCGC | 1 cut(s) | 937 |
| HaeII | RGCGCY | 1 cut(s) | 939 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HapII | CCGG | 1 cut(s) | 749 |
| HhaI | GCGC | 1 cut(s) | 938 |
| Hin1II | CATG | 7 cut(s) | 328, 488, 634, 714, 728, 943, 965 |
| Hin6I | GCGC | 1 cut(s) | 936 |
| HinP1I | GCGC | 1 cut(s) | 936 |
| HincII | GTYRAC | 1 cut(s) | 826 |
| HindII | GTYRAC | 1 cut(s) | 826 |
| HinfI | GANTC | 4 cut(s) | 257, 790, 827, 977 |
| HpaII | CCGG | 1 cut(s) | 749 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 3 cut(s) | 200, 420, 826 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 606 |
| Hpy188III | TCNNGA | 4 cut(s) | 39, 166, 579, 888 |
| Hpy8I | GTNNAC | 3 cut(s) | 200, 420, 826 |
| HpyAV | CCTTC | 2 cut(s) | 274, 802 |
| HpyCH4III | ACNGT | 1 cut(s) | 869 |
| HpyCH4IV | ACGT | 2 cut(s) | 65, 243 |
| HpyCH4V | TGCA | 7 cut(s) | 147, 275, 344, 517, 689, 863, 961 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 20, 449, 514, 542 |
| HpyF3I | CTNAG | 4 cut(s) | 300, 363, 395, 555 |
| HpySE526I | ACGT | 2 cut(s) | 65, 243 |
| Hsp92II | CATG | 7 cut(s) | 328, 488, 634, 714, 728, 943, 965 |
| HspAI | GCGC | 1 cut(s) | 936 |
| Kzo9I | GATC | 3 cut(s) | 183, 610, 901 |
| LmnI | GCTCC | 2 cut(s) | 449, 933 |
| LweI | GCATC | 2 cut(s) | 262, 773 |
| MaeI | CTAG | 2 cut(s) | 15, 230 |
| MaeII | ACGT | 2 cut(s) | 65, 243 |
| MaeIII | GTNAC | 2 cut(s) | 254, 978 |
| MalI | GATC | 3 cut(s) | 185, 612, 903 |
| MboI | GATC | 3 cut(s) | 183, 610, 901 |
| MboII | GAAGA | 2 cut(s) | 96, 594 |
| MflI | RGATCY | 1 cut(s) | 610 |
| MhlI | GDGCHC | 2 cut(s) | 847, 969 |
| MluCI | AATT | 6 cut(s) | 55, 293, 596, 625, 678, 1009 |
| MlyI | GAGTC | 3 cut(s) | 251, 821, 986 |
| MmeI | TCCRAC | 1 cut(s) | 602 |
| MnlI | CCTC | 8 cut(s) | 188, 358, 384, 556, 565, 612, 661, 939 |
| Mph1103I | ATGCAT | 1 cut(s) | 963 |
| MroXI | GAANNNNTTC | 2 cut(s) | 284, 681 |
| MseI | TTAA | 3 cut(s) | 54, 372, 438 |
| MslI | CAYNNNNRTG | 1 cut(s) | 854 |
| MspCI | CTTAAG | 1 cut(s) | 437 |
| MspI | CCGG | 1 cut(s) | 749 |
| Mva1269I | GAATGC | 3 cut(s) | 53, 538, 963 |
| MvnI | CGCG | 1 cut(s) | 876 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 20, 449, 514, 542 |
| NdeI | CATATG | 1 cut(s) | 214 |
| NdeII | GATC | 3 cut(s) | 183, 610, 901 |
| NlaIII | CATG | 7 cut(s) | 328, 488, 634, 714, 728, 943, 965 |
| NmuCI | GTSAC | 2 cut(s) | 254, 978 |
| NsiI | ATGCAT | 1 cut(s) | 963 |
| NspI | RCATGY | 1 cut(s) | 714 |
| PctI | GAATGC | 3 cut(s) | 53, 538, 963 |
| PdmI | GAANNNNTTC | 2 cut(s) | 284, 681 |
| PfeI | GAWTC | 1 cut(s) | 790 |
| PleI | GAGTC | 3 cut(s) | 251, 821, 985 |
| PpsI | GAGTC | 3 cut(s) | 251, 821, 985 |
| Ppu21I | YACGTR | 1 cut(s) | 244 |
| PpuMI | RGGWCCY | 1 cut(s) | 701 |
| Psp5II | RGGWCCY | 1 cut(s) | 701 |
| PspPI | GGNCC | 3 cut(s) | 353, 367, 701 |
| PspPPI | RGGWCCY | 1 cut(s) | 701 |
| PsuI | RGATCY | 1 cut(s) | 610 |
| RsaI | GTAC | 1 cut(s) | 242 |
| RsaNI | GTAC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 854 |
| SaqAI | TTAA | 3 cut(s) | 54, 372, 438 |
| Sau3AI | GATC | 3 cut(s) | 183, 610, 901 |
| Sau96I | GGNCC | 3 cut(s) | 353, 367, 701 |
| SchI | GAGTC | 3 cut(s) | 251, 821, 986 |
| SduI | GDGCHC | 2 cut(s) | 847, 969 |
| SfaNI | GCATC | 2 cut(s) | 262, 773 |
| SinI | GGWCC | 2 cut(s) | 353, 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 854 |
| SmlI | CTYRAG | 2 cut(s) | 259, 437 |
| SmoI | CTYRAG | 2 cut(s) | 259, 437 |
| Sse9I | AATT | 6 cut(s) | 55, 293, 596, 625, 678, 1009 |
| SspMI | CTAG | 2 cut(s) | 15, 230 |
| TaaI | ACNGT | 1 cut(s) | 869 |
| TaiI | ACGT | 2 cut(s) | 68, 246 |
| TaqI | TCGA | 4 cut(s) | 288, 578, 591, 904 |
| TasI | AATT | 6 cut(s) | 55, 293, 596, 625, 678, 1009 |
| TfiI | GAWTC | 1 cut(s) | 790 |
| Tru1I | TTAA | 3 cut(s) | 54, 372, 438 |
| Tru9I | TTAA | 3 cut(s) | 54, 372, 438 |
| TscAI | CASTG | 1 cut(s) | 847 |
| TseFI | GTSAC | 2 cut(s) | 254, 978 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 978 |
| TspDTI | ATGAA | 6 cut(s) | 17, 61, 306, 473, 609, 782 |
| TspGWI | ACGGA | 1 cut(s) | 292 |
| TspRI | CASTG | 1 cut(s) | 847 |
| Vha464I | CTTAAG | 1 cut(s) | 437 |
| VpaK11BI | GGWCC | 2 cut(s) | 353, 701 |
| XapI | RAATTY | 3 cut(s) | 625, 678, 1009 |
| XceI | RCATGY | 1 cut(s) | 714 |
| XmiI | GTMKAC | 2 cut(s) | 199, 419 |
| XmnI | GAANNNNTTC | 2 cut(s) | 284, 681 |
| XspI | CTAG | 2 cut(s) | 15, 230 |
| Zsp2I | ATGCAT | 1 cut(s) | 963 |