FvH4_3g18750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014693
Physical Location & Seq
Forward (+)
12044310 .. 12047439
3130 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18750.t3

Sequence Viewer

Length: 1335 bp
ATGGGTGTAGAGGAGAAAACCCAACAGTGTACTAGTCCTACTGGTGGCTTTGGTAGATCCTCAAATTCCAAGAAGACTAATAAGCAAAAGAAAGTGCCACAGAGAGGTTTAGGTGTGGCTCAGCTTGAGAAGATCAGATTAGAAGAACAGCAAAAGAAAGCTGCTTCTGTTTTGACATCACCAACCCCCACACCTGCCTCAAATTCCTTACCTTCACCAACCAAATCATCTCCATGTGTTCCTAATCCTGCTCCCATTAGACATTATCAACCACCCTCTTCAATCTCATTTCCATCTCTGCCATCACTGGATCTGCCCTCACCAAACTCGATTTTCAGGCCACCCAATGCCGAGGTTGTTCGAAAACAACAGAACAGTGTGAGTGCTGTTCCATTGCCTAACAATGGGTTTGAGATTCCGGGACATGGAAATGTTGTTGTCCCCAACTTTTGGAATCCCAATTGTGAGTACAATGGTGCTGATCTCAATAAGGAGAGTTCATCAGGAATCTTGGATCCCGGATTCGCATTTCGGCCTAGTTTGAATAATTTGCCTACTTTTGATCACTCCAACCCGATTTGGCCTCTTCCCAATTTTCAGAGAACACAGCAATTTCATCACCAACCACAACCACAACCACCACCACCACCTCCTCCTTCATTGGTGAATGTATCATCAGCTACTTCATTATCATCATCATCATCTGTGCTAAACTTTCACACAGAGCCCCCTTCAAACCAAAGCTATTACAGCAACTATACTACACCAATGTGGTCTGAGGAAGAAAGGATGGTTGGCATGAAAAGGCCATATCCCTTTTCTCAAGAGATTGATGCCCCCTCAATCAACTTCAAATTCCCAACCTTTGTTGCTCCTCCGATGAGAACAGATGAAACTACTTCCTGTGGGAACAGAGGAGGCACCTACAATTTAGACCCTGGATGCAACTCAATCTTCAGAGAAGGCCCTACATGCTCAACTTCCATTGCGGAGTCCAATTCAAAGATTAGCATTAAAGAAAATGGGAGTGTTAATGGAGATTTTCTCACACTTGCCCCTCCTACAAGTAATAGGGCATGTCCAAGCCAAAAGTTCAGTTTTCCTCCAGGTTATCTAGCATTCCATAACCCTGAAGTCCCCAATTTCGCCTCGTTTCCTTATCAAGGAAGTTCAGAAGATACAATTTTTCAGCCAGGACCAAGTGGTTCAAATCCACAACAGGCTTTCTACACCTTCATCCCACCAGCAAGAGCACAACTTGTTAGACCAGCAGCAACCATAAACAATTGTAATGGTGATGTAGGAGAAACTGTTGATCTCAATTTGAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

445

Amino Acids

48.21

Weight (kDa)

8.06

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18750 FvH4_3g18750 FvH4_3g18750
malus_domestica MD03G1238800.v1.1 MD11G1258600.v1.1
prunus_persica Prupe.4G171200_v2.0.a1
pyrus_communis pycom11g22840
rosa_chinensis RchiOBHm_Chr5g0031561
rosa_laevigata RLG00000033324
rosa_multiflora Rmu_sc0014784.1_g000002
rosa_roxburghii Rroxscaffold_1G00048740
rosa_rugosa Rorug05G0127000
rosa_samantha Rh5AG220200 Rh5BG219600 Rh5CG243000 Rh5DG224700
rosa_wichuraiana Rw5G020080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1333
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 450
AciI CCGC 1 cut(s) 989
AclWI GGATC 4 cut(s) 51, 318, 509, 522
AcsI RAATTY 3 cut(s) 64, 202, 854
AcuI CTGAAG 2 cut(s) 940, 1152
AfaI GTAC 2 cut(s) 31, 470
AfiI CCNNNNNNNGG 6 cut(s) 44, 104, 404, 425, 450, 1163
AgsI TTSAA 7 cut(s) 282, 544, 735, 853, 1002, 1209, 1327
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 3 cut(s) 937, 1105, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AleI CACNNNNGTG 1 cut(s) 769
AluBI AGCT 4 cut(s) 124, 161, 680, 744
AluI AGCT 4 cut(s) 124, 161, 680, 744
Alw21I GWGCWC 1 cut(s) 1255
AlwI GGATC 4 cut(s) 51, 318, 509, 522
AoxI GGCC 5 cut(s) 338, 533, 581, 806, 964
ApeKI GCWGC 2 cut(s) 161, 1271
ApoI RAATTY 3 cut(s) 64, 202, 854
AspS9I GGNCC 2 cut(s) 965, 1196
AsuC2I CCSGG 2 cut(s) 420, 519
AsuHPI GGTGA 6 cut(s) 171, 207, 312, 611, 676, 1307
AsuII TTCGAA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 1196
BamHI GGATCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 1255
BbvI GCAGC 2 cut(s) 148, 1283
BccI CCATC 3 cut(s) 301, 310, 784
BciT130I CCWGG 3 cut(s) 939, 1107, 1194
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 420, 519
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 537, 1115
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 2 cut(s) 162, 1272
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 163, 1273
Bme1390I CCNGG 5 cut(s) 420, 519, 939, 1107, 1194
Bme18I GGWCC 1 cut(s) 1196
BmgT120I GGNCC 2 cut(s) 965, 1196
BmiI GGNNCC 2 cut(s) 516, 922
BmrFI CCNGG 5 cut(s) 420, 519, 939, 1107, 1194
BmsI GCATC 2 cut(s) 823, 932
BpiI GAAGAC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 1029, 1061
BpmI CTGGAG 1 cut(s) 1089
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 2 cut(s) 146, 807
BpuMI CCSGG 2 cut(s) 420, 519
BsaJI CCNNGG 2 cut(s) 351, 937
BsaXI ACNNNNNCTCC 2 cut(s) 1296, 1326
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 104, 404, 425, 450, 1163
Bse1I ACTGG 2 cut(s) 46, 312
Bse3DI GCAATG 2 cut(s) 392, 984
BseBI CCWGG 3 cut(s) 939, 1107, 1194
BseDI CCNNGG 2 cut(s) 351, 937
BseGI GGATG 3 cut(s) 795, 947, 1236
BseLI CCNNNNNNNGG 6 cut(s) 44, 104, 404, 425, 450, 1163
BseMI GCAATG 2 cut(s) 392, 984
BseMII CTCAG 2 cut(s) 134, 768
BseNI ACTGG 2 cut(s) 46, 312
BseRI GAGGAG 4 cut(s) 26, 642, 864, 930
BseXI GCAGC 2 cut(s) 148, 1283
BshFI GGCC 5 cut(s) 340, 535, 583, 808, 966
BshNI GGYRCC 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 1255
BsiSI CCGG 2 cut(s) 419, 519
BslFI GGGAC 3 cut(s) 425, 435, 1121
BslI CCNNNNNNNGG 6 cut(s) 44, 104, 404, 425, 450, 1163
BsmFI GGGAC 3 cut(s) 425, 435, 1121
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 5 cut(s) 340, 535, 583, 808, 966
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 729, 1255
Bsp143I GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 989
BspANI GGCC 5 cut(s) 340, 535, 583, 808, 966
BspCNI CTCAG 2 cut(s) 133, 769
BspLI GGNNCC 2 cut(s) 516, 922
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 4 cut(s) 51, 318, 509, 522
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 392, 984
BsrI ACTGG 2 cut(s) 46, 312
BssECI CCNNGG 2 cut(s) 351, 937
BssMI GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
Bst2UI CCWGG 3 cut(s) 939, 1107, 1194
Bst4CI ACNGT 3 cut(s) 27, 377, 1312
Bst6I CTCTTC 2 cut(s) 283, 591
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 120, 777
BstENI CCTNNNNNAGG 1 cut(s) 1161
BstF5I GGATG 3 cut(s) 795, 947, 1236
BstKTI GATC 7 cut(s) 59, 135, 313, 484, 517, 565, 1318
BstMBI GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
BstMWI GCNNNNNNNGC 2 cut(s) 750, 972
BstNI CCWGG 3 cut(s) 939, 1107, 1194
BstNSI RCATGY 2 cut(s) 975, 1080
BstSCI CCNGG 5 cut(s) 418, 517, 937, 1105, 1192
BstV1I GCAGC 2 cut(s) 148, 1283
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 3 cut(s) 56, 310, 514
BstYI RGATCY 3 cut(s) 56, 310, 514
BsuRI GGCC 5 cut(s) 340, 535, 583, 808, 966
BtsCI GGATG 3 cut(s) 795, 947, 1236
BtsIMutI CAGTG 3 cut(s) 32, 305, 382
BveI ACCTGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 965, 1196
Csp6I GTAC 2 cut(s) 30, 469
CviAII CATG 5 cut(s) 234, 425, 799, 972, 1077
CviQI GTAC 2 cut(s) 30, 469
DdeI CTNAG 2 cut(s) 120, 777
DpnI GATC 7 cut(s) 58, 134, 312, 483, 516, 564, 1317
DpnII GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
Eam1104I CTCTTC 2 cut(s) 283, 591
EarI CTCTTC 2 cut(s) 283, 591
Eco24I GRGCYC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 1196
Eco57I CTGAAG 2 cut(s) 940, 1152
EcoNI CCTNNNNNAGG 1 cut(s) 1161
EcoO109I RGGNCCY 1 cut(s) 965
EcoRII CCWGG 3 cut(s) 937, 1105, 1192
EcoT38I GRGCYC 1 cut(s) 729
FaeI CATG 5 cut(s) 237, 428, 802, 975, 1080
FaqI GGGAC 3 cut(s) 425, 435, 1121
FatI CATG 5 cut(s) 233, 424, 798, 971, 1076
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 162, 1272
FokI GGATG 3 cut(s) 802, 954, 1223
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 2 cut(s) 162, 1272
FspBI CTAG 3 cut(s) 33, 537, 1115
GluI GCNGC 2 cut(s) 162, 1272
GsuI CTGGAG 1 cut(s) 1089
HaeIII GGCC 5 cut(s) 340, 535, 583, 808, 966
HapII CCGG 2 cut(s) 419, 519
Hin1II CATG 5 cut(s) 237, 428, 802, 975, 1080
HinfI GANTC 5 cut(s) 415, 454, 507, 522, 992
HpaII CCGG 2 cut(s) 419, 519
HphI GGTGA 6 cut(s) 171, 207, 312, 611, 676, 1307
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 6 cut(s) 137, 600, 778, 879, 959, 1174
Hpy188III TCNNGA 2 cut(s) 504, 824
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 5 cut(s) 222, 666, 741, 956, 1243
HpyCH4III ACNGT 3 cut(s) 27, 377, 1312
HpyCH4V TGCA 1 cut(s) 945
HpyF10VI GCNNNNNNNGC 2 cut(s) 750, 972
HpyF3I CTNAG 2 cut(s) 120, 777
Hsp92II CATG 5 cut(s) 237, 428, 802, 975, 1080
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
LmnI GCTCC 2 cut(s) 256, 877
Lsp1109I GCAGC 2 cut(s) 148, 1283
LweI GCATC 2 cut(s) 823, 932
MaeI CTAG 3 cut(s) 33, 537, 1115
MalI GATC 7 cut(s) 58, 134, 312, 483, 516, 564, 1317
MboI GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
MboII GAAGA 8 cut(s) 85, 142, 155, 270, 578, 794, 946, 1187
MfeI CAATTG 2 cut(s) 460, 1285
MflI RGATCY 3 cut(s) 56, 310, 514
MhlI GDGCHC 2 cut(s) 729, 1255
MlyI GAGTC 1 cut(s) 1001
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 2 cut(s) 1014, 1032
MslI CAYNNNNRTG 3 cut(s) 232, 429, 769
MspI CCGG 2 cut(s) 419, 519
MspR9I CCNGG 5 cut(s) 420, 519, 939, 1107, 1194
MunI CAATTG 2 cut(s) 460, 1285
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 3 cut(s) 939, 1107, 1194
MwoI GCNNNNNNNGC 2 cut(s) 750, 972
NciI CCSGG 2 cut(s) 420, 519
NdeII GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
NlaIII CATG 5 cut(s) 237, 428, 802, 975, 1080
NlaIV GGNNCC 2 cut(s) 516, 922
NmeAIII GCCGAG 1 cut(s) 376
NspI RCATGY 2 cut(s) 975, 1080
NspV TTCGAA 1 cut(s) 361
OliI CACNNNNGTG 1 cut(s) 769
PaqCI CACCTGC 1 cut(s) 202
PctI GAATGC 1 cut(s) 1118
PfeI GAWTC 4 cut(s) 415, 454, 507, 522
PflMI CCANNNNNTGG 1 cut(s) 450
PfoI TCCNGGA 2 cut(s) 418, 517
PkrI GCNGC 2 cut(s) 163, 1273
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
PsiI TTATAA 1 cut(s) 1333
Psp6I CCWGG 3 cut(s) 937, 1105, 1192
PspGI CCWGG 3 cut(s) 937, 1105, 1192
PspN4I GGNNCC 2 cut(s) 516, 922
PspPI GGNCC 2 cut(s) 965, 1196
PsuI RGATCY 3 cut(s) 56, 310, 514
RsaI GTAC 2 cut(s) 31, 470
RsaNI GTAC 2 cut(s) 30, 469
RseI CAYNNNNRTG 3 cut(s) 232, 429, 769
SaqAI TTAA 2 cut(s) 1014, 1032
SatI GCNGC 2 cut(s) 162, 1272
Sau3AI GATC 7 cut(s) 56, 132, 310, 481, 514, 562, 1315
Sau96I GGNCC 2 cut(s) 965, 1196
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 5 cut(s) 420, 519, 939, 1107, 1194
SduI GDGCHC 2 cut(s) 729, 1255
SfaNI GCATC 2 cut(s) 823, 932
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 1 cut(s) 1196
SmiMI CAYNNNNRTG 3 cut(s) 232, 429, 769
SmlI CTYRAG 2 cut(s) 125, 822
SmoI CTYRAG 2 cut(s) 125, 822
SpeI ACTAGT 1 cut(s) 32
SsiI CCGC 1 cut(s) 989
SspMI CTAG 3 cut(s) 33, 537, 1115
StyD4I CCNGG 5 cut(s) 418, 517, 937, 1105, 1192
TaaI ACNGT 3 cut(s) 27, 377, 1312
TaqI TCGA 2 cut(s) 329, 361
TatI WGTACW 2 cut(s) 29, 468
TfiI GAWTC 4 cut(s) 415, 454, 507, 522
Tru1I TTAA 2 cut(s) 1014, 1032
Tru9I TTAA 2 cut(s) 1014, 1032
TscAI CASTG 3 cut(s) 32, 312, 382
TseI GCWGC 2 cut(s) 161, 1271
TspDTI ATGAA 7 cut(s) 489, 605, 648, 675, 815, 906, 1225
TspRI CASTG 3 cut(s) 32, 312, 382
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 1196
XagI CCTNNNNNAGG 1 cut(s) 1161
XapI RAATTY 3 cut(s) 64, 202, 854
XceI RCATGY 2 cut(s) 975, 1080
XspI CTAG 3 cut(s) 33, 537, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.