Rmu_sc0014784.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014784.1
OG0014693
Physical Location & Seq
Reverse (-)
9504 .. 11801
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014784.1_g000002.1.cds

Sequence Viewer

Length: 1419 bp
atgggtaaagaggaaataacccagaagtgtactagtcctactggtggctttggtagatcctcaaattccaaaaagactaataagcaaaagaaagtgccacagagaggtttaggtgtggctcagcttgagaagatcagattagaagaacagcaaaagaaagctgcttctgttttgacatcaccaaccccacctgcctctaattccttaccatcaccaaccaaatcatctccatgtgttcctaatcccgctccgattagacattaccaaccaccctcttcaatcccatttccatctctgccatcactggatctgccctcaccaaactcgattttcaggccacccaatgctgaggttgttcgaaagccgaacagtattagtactgttccattgcctaacaaggggactcatgggtttgagattccgggacatggaaatgctgttgttcccaacttgtggaatcccaattgtgagtacaacagtgctgatctcaataaggagagttcatcaggaattttggatccgggattcgcatttcggcctagtttgaacaatttgcctactttcgataactccaacgcgatttgggctctccccaattttccacaaagaacacaccaatttcatcaccaaccaccaccacctcctccttcattggtgaatgtctcatcagctactccattattgtcatcatcatctgtactaaactttcacacagagcccccttcaaaccaaagctattacagcaactatactacaccaatgtggtcagaggaagaaaggatggttggcatgaaaaggctatatcccttttctcacgacaatgacgctccctcaatcaacttcaaattcccaacctttgctcctcctcctatgaggacagatgaaacaacttcatgtgggaacagaggaggcacctctaatttagaccctgacggcaacacaatcttcagagaaggctctacctgctcaactaaaatttcggagtccaattcgaagattagcatcaaagaaaatgggagtgttaatggagattttctcacacttgcccctcctacaactaataggacatgtccgagcccaaagtttaattttcctccagcttatctagcattccataaccctgaagtccccgattttgcctcatttccttacaaaggaagttcggaagatacaatcttacagtcaggaccaagtggttcaactccacaacaggctttctacaccttcatcccaccagcaaaatcacaaattgttaaaccagcagcaaccataaacaattgtaatggtgggatgatggatgactcaaggcactgctttgctaacaaactcttgcatgtggattgtagaggatctgatttggtttgtcctatcttccttagtggggatccatatagatctgaccttcatgaatcgttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

472

Amino Acids

51.32

Weight (kDa)

8.25

Isoelectric Point (pI)

58.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18750 FvH4_3g18750 FvH4_3g18750
malus_domestica MD03G1238800.v1.1 MD11G1258600.v1.1
prunus_persica Prupe.4G171200_v2.0.a1
pyrus_communis pycom11g22840
rosa_chinensis RchiOBHm_Chr5g0031561
rosa_laevigata RLG00000033324
rosa_multiflora Rmu_sc0014784.1_g000002
rosa_roxburghii Rroxscaffold_1G00048740
rosa_rugosa Rorug05G0127000
rosa_samantha Rh5AG220200 Rh5BG219600 Rh5CG243000 Rh5DG224700
rosa_wichuraiana Rw5G020080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1417
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 199, 971
AccB1I GGYRCC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 248
AccII CGCG 1 cut(s) 578
AciI CCGC 1 cut(s) 246
AclWI GGATC 7 cut(s) 51, 315, 512, 525, 1357, 1379, 1392
AcsI RAATTY 4 cut(s) 64, 510, 845, 975
AcuI CTGAAG 2 cut(s) 931, 1143
AfaI GTAC 4 cut(s) 31, 379, 473, 699
AfiI CCNNNNNNNGG 7 cut(s) 44, 104, 398, 428, 453, 1154, 1381
AflIII ACRYGT 1 cut(s) 1067
AgsI TTSAA 5 cut(s) 279, 547, 726, 844, 1200
AhlI ACTAGT 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AleI CACNNNNGTG 1 cut(s) 760
AluBI AGCT 5 cut(s) 124, 161, 671, 735, 1100
AluI AGCT 5 cut(s) 124, 161, 671, 735, 1100
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 7 cut(s) 51, 315, 512, 525, 1357, 1379, 1392
AoxI GGCC 2 cut(s) 335, 536
ApeKI GCWGC 2 cut(s) 161, 1262
ApoI RAATTY 4 cut(s) 64, 510, 845, 975
AspS9I GGNCC 1 cut(s) 1187
AsuC2I CCSGG 2 cut(s) 423, 522
AsuHPI GGTGA 5 cut(s) 171, 204, 309, 617, 667
AsuII TTCGAA 2 cut(s) 358, 992
AvaII GGWCC 1 cut(s) 1187
BamHI GGATCC 2 cut(s) 517, 1384
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 3 cut(s) 589, 720, 1079
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 148, 1274
BccI CCATC 5 cut(s) 217, 298, 307, 775, 1288
BceAI ACGGC 1 cut(s) 949
BcnI CCSGG 2 cut(s) 423, 522
BcoDI GTCTC 1 cut(s) 667
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 3 cut(s) 33, 540, 1106
BfuAI ACCTGC 2 cut(s) 199, 971
BglII AGATCT 1 cut(s) 1394
BisI GCNGC 2 cut(s) 162, 1263
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 2 cut(s) 163, 1264
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 423, 522
Bme18I GGWCC 1 cut(s) 1187
BmgT120I GGNCC 1 cut(s) 1187
BmiI GGNNCC 3 cut(s) 519, 913, 1386
BmrFI CCNGG 2 cut(s) 423, 522
BmsI GCATC 1 cut(s) 1011
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 1 cut(s) 1080
Bpu10I CCTNAGC 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 2 cut(s) 358, 992
BpuEI CTTGAG 2 cut(s) 146, 1288
BpuMI CCSGG 2 cut(s) 423, 522
BsaBI GATNNNNATC 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 104, 398, 428, 453, 1154, 1381
Bse1I ACTGG 2 cut(s) 46, 309
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 1001
BseGI GGATG 4 cut(s) 786, 1227, 1296, 1303
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 7 cut(s) 44, 104, 398, 428, 453, 1154, 1381
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 134, 339
BseNI ACTGG 2 cut(s) 46, 309
BseRI GAGGAG 4 cut(s) 633, 852, 855, 921
BseXI GCAGC 2 cut(s) 148, 1274
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 337, 538
BshNI GGYRCC 1 cut(s) 911
BsiSI CCGG 2 cut(s) 422, 521
BslFI GGGAC 3 cut(s) 415, 438, 1112
BslI CCNNNNNNNGG 7 cut(s) 44, 104, 398, 428, 453, 1154, 1381
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 3 cut(s) 415, 438, 1112
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 2 cut(s) 337, 538
Bsp119I TTCGAA 2 cut(s) 358, 992
Bsp1286I GDGCHC 3 cut(s) 589, 720, 1079
Bsp143I GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 337, 538
BspCNI CTCAG 2 cut(s) 133, 340
BspFNI CGCG 1 cut(s) 578
BspHI TCATGA 1 cut(s) 1405
BspLI GGNNCC 3 cut(s) 519, 913, 1386
BspMI ACCTGC 2 cut(s) 199, 971
BspPI GGATC 7 cut(s) 51, 315, 512, 525, 1357, 1379, 1392
BspT104I TTCGAA 2 cut(s) 358, 992
BspT107I GGYRCC 1 cut(s) 911
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 2 cut(s) 46, 309
BssMI GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
Bst4CI ACNGT 4 cut(s) 371, 382, 479, 1182
Bst6I CTCTTC 1 cut(s) 280
BstBI TTCGAA 2 cut(s) 358, 992
BstDEI CTNAG 3 cut(s) 120, 348, 1376
BstENI CCTNNNNNAGG 1 cut(s) 1152
BstF5I GGATG 4 cut(s) 786, 1227, 1296, 1303
BstFNI CGCG 1 cut(s) 578
BstKTI GATC 8 cut(s) 59, 135, 310, 487, 520, 1352, 1387, 1397
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
BstMWI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
BstNSI RCATGY 2 cut(s) 1071, 1337
BstSCI CCNGG 2 cut(s) 421, 520
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 2 cut(s) 148, 1274
BstX2I RGATCY 6 cut(s) 56, 307, 517, 1349, 1384, 1394
BstYI RGATCY 6 cut(s) 56, 307, 517, 1349, 1384, 1394
BsuRI GGCC 2 cut(s) 337, 538
BtsCI GGATG 4 cut(s) 786, 1227, 1296, 1303
BtsI GCAGTG 1 cut(s) 1309
BtsIMutI CAGTG 3 cut(s) 302, 484, 1309
BveI ACCTGC 2 cut(s) 199, 971
CciI TCATGA 1 cut(s) 1405
Cfr13I GGNCC 1 cut(s) 1187
CseI GACGC 1 cut(s) 833
Csp6I GTAC 4 cut(s) 30, 378, 472, 698
CviAII CATG 8 cut(s) 231, 407, 428, 790, 894, 1068, 1334, 1406
CviQI GTAC 4 cut(s) 30, 378, 472, 698
DdeI CTNAG 3 cut(s) 120, 348, 1376
DpnI GATC 8 cut(s) 58, 134, 309, 486, 519, 1351, 1386, 1396
DpnII GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco24I GRGCYC 3 cut(s) 589, 720, 1079
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 2 cut(s) 931, 1143
EcoNI CCTNNNNNAGG 1 cut(s) 1152
EcoT38I GRGCYC 3 cut(s) 589, 720, 1079
FaeI CATG 8 cut(s) 234, 410, 431, 793, 897, 1071, 1337, 1409
FaqI GGGAC 3 cut(s) 415, 438, 1112
FatI CATG 8 cut(s) 230, 406, 427, 789, 893, 1067, 1333, 1405
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 162, 1263
FokI GGATG 4 cut(s) 793, 1214, 1303, 1310
FriOI GRGCYC 3 cut(s) 589, 720, 1079
Fsp4HI GCNGC 2 cut(s) 162, 1263
FspBI CTAG 3 cut(s) 33, 540, 1106
GluI GCNGC 2 cut(s) 162, 1263
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 2 cut(s) 337, 538
HapII CCGG 2 cut(s) 422, 521
HgaI GACGC 1 cut(s) 833
Hin1II CATG 8 cut(s) 234, 410, 431, 793, 897, 1071, 1337, 1409
HinfI GANTC 7 cut(s) 403, 418, 457, 525, 983, 1301, 1409
HpaII CCGG 2 cut(s) 422, 521
HphI GGTGA 5 cut(s) 171, 204, 309, 617, 667
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 9 cut(s) 137, 252, 769, 950, 982, 1074, 1165, 1354, 1399
Hpy188III TCNNGA 4 cut(s) 507, 815, 1185, 1406
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 5 cut(s) 657, 732, 947, 1234, 1412
HpyCH4III ACNGT 4 cut(s) 371, 382, 479, 1182
HpyCH4V TGCA 1 cut(s) 1333
HpyF10VI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
HpyF3I CTNAG 3 cut(s) 120, 348, 1376
Hsp92II CATG 8 cut(s) 234, 410, 431, 793, 897, 1071, 1337, 1409
Kzo9I GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
LmnI GCTCC 3 cut(s) 253, 832, 865
Lsp1109I GCAGC 2 cut(s) 148, 1274
LweI GCATC 1 cut(s) 1011
MaeI CTAG 3 cut(s) 33, 540, 1106
MalI GATC 8 cut(s) 58, 134, 309, 486, 519, 1351, 1386, 1396
MbiI CCGCTC 1 cut(s) 248
MboI GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
MboII GAAGA 8 cut(s) 142, 155, 267, 785, 937, 1006, 1178, 1363
MfeI CAATTG 2 cut(s) 463, 1276
MflI RGATCY 6 cut(s) 56, 307, 517, 1349, 1384, 1394
MhlI GDGCHC 3 cut(s) 589, 720, 1079
MlyI GAGTC 3 cut(s) 397, 992, 1295
MmeI TCCRAC 1 cut(s) 597
MseI TTAA 3 cut(s) 1023, 1086, 1254
MslI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
MspI CCGG 2 cut(s) 422, 521
MspR9I CCNGG 2 cut(s) 423, 522
MunI CAATTG 2 cut(s) 463, 1276
Mva1269I GAATGC 1 cut(s) 1109
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
NciI CCSGG 2 cut(s) 423, 522
NdeII GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
NlaIII CATG 8 cut(s) 234, 410, 431, 793, 897, 1071, 1337, 1409
NlaIV GGNNCC 3 cut(s) 519, 913, 1386
NspI RCATGY 2 cut(s) 1071, 1337
NspV TTCGAA 2 cut(s) 358, 992
OliI CACNNNNGTG 1 cut(s) 760
PagI TCATGA 1 cut(s) 1405
PaqCI CACCTGC 1 cut(s) 199
PciI ACATGT 1 cut(s) 1067
PctI GAATGC 1 cut(s) 1109
PfeI GAWTC 4 cut(s) 418, 457, 525, 1409
PflMI CCANNNNNTGG 1 cut(s) 453
PfoI TCCNGGA 2 cut(s) 421, 520
PkrI GCNGC 2 cut(s) 163, 1264
PleI GAGTC 3 cut(s) 397, 991, 1295
PpsI GAGTC 3 cut(s) 397, 991, 1295
PscI ACATGT 1 cut(s) 1067
PsiI TTATAA 1 cut(s) 1417
PspN4I GGNNCC 3 cut(s) 519, 913, 1386
PspPI GGNCC 1 cut(s) 1187
PsuI RGATCY 6 cut(s) 56, 307, 517, 1349, 1384, 1394
RsaI GTAC 4 cut(s) 31, 379, 473, 699
RsaNI GTAC 4 cut(s) 30, 378, 472, 698
RseI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
SaqAI TTAA 3 cut(s) 1023, 1086, 1254
SatI GCNGC 2 cut(s) 162, 1263
Sau3AI GATC 8 cut(s) 56, 132, 307, 484, 517, 1349, 1384, 1394
Sau96I GGNCC 1 cut(s) 1187
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 3 cut(s) 397, 992, 1295
ScrFI CCNGG 2 cut(s) 423, 522
SduI GDGCHC 3 cut(s) 589, 720, 1079
SfaNI GCATC 1 cut(s) 1011
SfuI TTCGAA 2 cut(s) 358, 992
SinI GGWCC 1 cut(s) 1187
SmiMI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
SmlI CTYRAG 2 cut(s) 125, 1303
SmoI CTYRAG 2 cut(s) 125, 1303
SpeI ACTAGT 1 cut(s) 32
SsiI CCGC 1 cut(s) 246
SspMI CTAG 3 cut(s) 33, 540, 1106
StyD4I CCNGG 2 cut(s) 421, 520
TaaI ACNGT 4 cut(s) 371, 382, 479, 1182
TaqI TCGA 4 cut(s) 326, 358, 564, 992
TatI WGTACW 4 cut(s) 29, 377, 471, 697
TfiI GAWTC 4 cut(s) 418, 457, 525, 1409
Tru1I TTAA 3 cut(s) 1023, 1086, 1254
Tru9I TTAA 3 cut(s) 1023, 1086, 1254
TscAI CASTG 3 cut(s) 309, 484, 1316
TseI GCWGC 2 cut(s) 161, 1262
TspDTI ATGAA 8 cut(s) 492, 611, 639, 806, 882, 897, 1216, 1394
TspRI CASTG 3 cut(s) 309, 484, 1316
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 1187
XagI CCTNNNNNAGG 1 cut(s) 1152
XapI RAATTY 4 cut(s) 64, 510, 845, 975
XceI RCATGY 2 cut(s) 1071, 1337
XspI CTAG 3 cut(s) 33, 540, 1106
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.