Rh5CG243000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014693
Physical Location & Seq
Forward (+)
25271294 .. 25274615
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG243000.1

Sequence Viewer

Length: 1206 bp
ATGGGTAAAGAGGAAATAACCCAGAAGTGTACTAGTCCTACTGGTGGCTTTGGTAGATCCTCAAATTCCAAAAAGACTAATAAGCAAAAGAAAGTGCCACAGAGAGGTTTAGGTGTGGCTCAGCTTGAGAAGATCAGATTAGAAGAACAGCAAAAGAAAGCTGCTTCTGTTTTGACATCACCAACCCCACCTGCCTCTAATTCCTTACCATCACCAACCAAATCATCTCCATGTGTTCCTAATCCTGCTCCGATTAGACATTACCAACCACCCTCTTCAATCCCATTTCCATCTCTGCCATCACTGGATCTGCCCTCACCAAACTCGATTTTCAGGCCACCCAATGCCGATGTTGTTCGAAAGCCGAACAGTATTAGTACTGTTCCATTGCCTAACAAGGGGACTCATGGGTTTGAGATTCCGGGACATGGAAATGTTGTTGTTCCCAACTTGTGGAATCCCAATTGTGAGTACAACAGTGCTGATCTCAATAAGGAGAGTTCATCAGGAATTTTGGATCCCCGATTCGCATTTCGGCCTAGTTTGAATAATTTGCCTACTTTCGATGACTCCAACGCGATTTGGGCTCTCCCCAATTTTCCACAAAGAGCACACCAATTTCATCACCAACCACCACCACCTCCTCCTTCATTGGTGAATGTCTCATCAGCTACTTCATTATCGTCATCATCATCTGTACTGAACTTTCACACAGAGCCCCCTTCAAACCAAAGCTATCACAGCATCTATACTACACCAATGTGGTCAGAGGAAGAAAGGATGGTTGGCATGAAAAGGCTATATCCCTTTTCTCACGACAATGACGCTCCCTCAATCAACTTCAAATTCCCAACCTTTGCTCCTCCTCCTATGAGGACAGATGAAACAACTTCATGTGGGAACAGAGGAGGCACCTCTAATTTAGACCCTGACGGCAACACAATCTTCAGAGAAGGCTCTACCTGCTCAACTAAAATTTCGGAGTCCAATTCGAAGATTAGCATCAAAGAAAATGGGAGTGTTAATGGAGATTTTCTCACACTTGCCCCTCCTACAACTAATAGGACATGTCCGAGCCCAAAGTTTAATTTTCCTCCAGCTTATCTAGCATTCCATAACCCTGAAGTCCCCGATTTTGCCTCATTTCCTTATAAAGTAAGATACATCAACAGATACACTCACTTTTCATTCACTAGTTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NOZZLE

Protein Analysis

401

Amino Acids

44.0

Weight (kDa)

9.13

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18750 FvH4_3g18750 FvH4_3g18750
malus_domestica MD03G1238800.v1.1 MD11G1258600.v1.1
prunus_persica Prupe.4G171200_v2.0.a1
pyrus_communis pycom11g22840
rosa_chinensis RchiOBHm_Chr5g0031561
rosa_laevigata RLG00000033324
rosa_multiflora Rmu_sc0014784.1_g000002
rosa_roxburghii Rroxscaffold_1G00048740
rosa_rugosa Rorug05G0127000
rosa_samantha Rh5AG220200 Rh5BG219600 Rh5CG243000 Rh5DG224700
rosa_wichuraiana Rw5G020080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AarI CACCTGC 1 cut(s) 199
Acc36I ACCTGC 2 cut(s) 199, 971
AccB1I GGYRCC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 453
AccII CGCG 1 cut(s) 578
AclWI GGATC 4 cut(s) 51, 315, 512, 525
AcsI RAATTY 4 cut(s) 64, 510, 845, 975
AcuI CTGAAG 2 cut(s) 931, 1143
AfaI GTAC 4 cut(s) 31, 379, 473, 699
AfiI CCNNNNNNNGG 5 cut(s) 44, 104, 398, 428, 453
AflIII ACRYGT 1 cut(s) 1067
AgsI TTSAA 4 cut(s) 279, 547, 726, 844
AhlI ACTAGT 2 cut(s) 32, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AleI CACNNNNGTG 1 cut(s) 760
AluBI AGCT 5 cut(s) 124, 161, 671, 735, 1100
AluI AGCT 5 cut(s) 124, 161, 671, 735, 1100
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 4 cut(s) 51, 315, 512, 525
AoxI GGCC 2 cut(s) 335, 536
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 4 cut(s) 64, 510, 845, 975
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 5 cut(s) 171, 204, 309, 617, 667
AsuII TTCGAA 2 cut(s) 358, 992
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 3 cut(s) 589, 720, 1079
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 1 cut(s) 148
BccI CCATC 4 cut(s) 217, 298, 307, 775
BceAI ACGGC 1 cut(s) 949
BcnI CCSGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 667
BcuI ACTAGT 2 cut(s) 32, 1193
BfaI CTAG 4 cut(s) 33, 540, 1106, 1194
BfuAI ACCTGC 2 cut(s) 199, 971
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 519, 913
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 753, 1011
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 1 cut(s) 1080
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 2 cut(s) 358, 992
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 1001
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 104, 398, 428, 453
Bse1I ACTGG 2 cut(s) 46, 309
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 1001
BseGI GGATG 1 cut(s) 786
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 5 cut(s) 44, 104, 398, 428, 453
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 46, 309
BseRI GAGGAG 4 cut(s) 633, 852, 855, 921
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 337, 538
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 3 cut(s) 415, 438, 1112
BslI CCNNNNNNNGG 5 cut(s) 44, 104, 398, 428, 453
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 3 cut(s) 415, 438, 1112
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 2 cut(s) 337, 538
Bsp119I TTCGAA 2 cut(s) 358, 992
Bsp1286I GDGCHC 4 cut(s) 589, 613, 720, 1079
Bsp143I GATC 5 cut(s) 56, 132, 307, 484, 517
Bsp1720I GCTNAGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 337, 538
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 2 cut(s) 519, 913
BspMI ACCTGC 2 cut(s) 199, 971
BspPI GGATC 4 cut(s) 51, 315, 512, 525
BspT104I TTCGAA 2 cut(s) 358, 992
BspT107I GGYRCC 1 cut(s) 911
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 2 cut(s) 46, 309
BssMI GATC 5 cut(s) 56, 132, 307, 484, 517
Bst4CI ACNGT 3 cut(s) 371, 382, 479
Bst6I CTCTTC 1 cut(s) 280
BstBI TTCGAA 2 cut(s) 358, 992
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 786
BstFNI CGCG 1 cut(s) 578
BstKTI GATC 5 cut(s) 59, 135, 310, 487, 520
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 5 cut(s) 56, 132, 307, 484, 517
BstMWI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 1 cut(s) 421
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 3 cut(s) 56, 307, 517
BstYI RGATCY 3 cut(s) 56, 307, 517
BsuRI GGCC 2 cut(s) 337, 538
BtsCI GGATG 1 cut(s) 786
BtsIMutI CAGTG 2 cut(s) 302, 484
BveI ACCTGC 2 cut(s) 199, 971
CseI GACGC 1 cut(s) 833
Csp6I GTAC 4 cut(s) 30, 378, 472, 698
CviAII CATG 6 cut(s) 231, 407, 428, 790, 894, 1068
CviQI GTAC 4 cut(s) 30, 378, 472, 698
DdeI CTNAG 1 cut(s) 120
DpnI GATC 5 cut(s) 58, 134, 309, 486, 519
DpnII GATC 5 cut(s) 56, 132, 307, 484, 517
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco24I GRGCYC 3 cut(s) 589, 720, 1079
Eco57I CTGAAG 2 cut(s) 931, 1143
EcoT38I GRGCYC 3 cut(s) 589, 720, 1079
FaeI CATG 6 cut(s) 234, 410, 431, 793, 897, 1071
FaqI GGGAC 3 cut(s) 415, 438, 1112
FatI CATG 6 cut(s) 230, 406, 427, 789, 893, 1067
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 793
FriOI GRGCYC 3 cut(s) 589, 720, 1079
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 4 cut(s) 33, 540, 1106, 1194
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 2 cut(s) 337, 538
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 833
Hin1II CATG 6 cut(s) 234, 410, 431, 793, 897, 1071
HinfI GANTC 6 cut(s) 403, 418, 457, 525, 569, 983
HpaII CCGG 1 cut(s) 422
HphI GGTGA 5 cut(s) 171, 204, 309, 617, 667
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 6 cut(s) 137, 252, 769, 950, 982, 1074
Hpy188III TCNNGA 2 cut(s) 507, 815
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 657, 732, 947
HpyCH4III ACNGT 3 cut(s) 371, 382, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 6 cut(s) 234, 410, 431, 793, 897, 1071
Kzo9I GATC 5 cut(s) 56, 132, 307, 484, 517
LmnI GCTCC 3 cut(s) 253, 832, 865
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 753, 1011
MaeI CTAG 4 cut(s) 33, 540, 1106, 1194
MalI GATC 5 cut(s) 58, 134, 309, 486, 519
MboI GATC 5 cut(s) 56, 132, 307, 484, 517
MboII GAAGA 6 cut(s) 142, 155, 267, 785, 937, 1006
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 3 cut(s) 56, 307, 517
MhlI GDGCHC 4 cut(s) 589, 613, 720, 1079
MlyI GAGTC 3 cut(s) 397, 563, 992
MmeI TCCRAC 1 cut(s) 597
MseI TTAA 2 cut(s) 1023, 1086
MslI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 1109
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 584, 741, 963, 1106
NciI CCSGG 1 cut(s) 423
NdeII GATC 5 cut(s) 56, 132, 307, 484, 517
NlaIII CATG 6 cut(s) 234, 410, 431, 793, 897, 1071
NlaIV GGNNCC 2 cut(s) 519, 913
NspI RCATGY 1 cut(s) 1071
NspV TTCGAA 2 cut(s) 358, 992
OliI CACNNNNGTG 1 cut(s) 760
PaqCI CACCTGC 1 cut(s) 199
PciI ACATGT 1 cut(s) 1067
PctI GAATGC 1 cut(s) 1109
PfeI GAWTC 3 cut(s) 418, 457, 525
PflMI CCANNNNNTGG 1 cut(s) 453
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 3 cut(s) 397, 563, 991
PpsI GAGTC 3 cut(s) 397, 563, 991
PscI ACATGT 1 cut(s) 1067
PsiI TTATAA 1 cut(s) 1152
PspN4I GGNNCC 2 cut(s) 519, 913
PsuI RGATCY 3 cut(s) 56, 307, 517
RsaI GTAC 4 cut(s) 31, 379, 473, 699
RsaNI GTAC 4 cut(s) 30, 378, 472, 698
RseI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
SaqAI TTAA 2 cut(s) 1023, 1086
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 5 cut(s) 56, 132, 307, 484, 517
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 3 cut(s) 397, 563, 992
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 4 cut(s) 589, 613, 720, 1079
SfaNI GCATC 2 cut(s) 753, 1011
SfuI TTCGAA 2 cut(s) 358, 992
SmiMI CAYNNNNRTG 4 cut(s) 229, 432, 760, 819
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SpeI ACTAGT 2 cut(s) 32, 1193
SspMI CTAG 4 cut(s) 33, 540, 1106, 1194
StyD4I CCNGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 371, 382, 479
TaqI TCGA 4 cut(s) 326, 358, 564, 992
TatI WGTACW 4 cut(s) 29, 377, 471, 697
TfiI GAWTC 3 cut(s) 418, 457, 525
Tru1I TTAA 2 cut(s) 1023, 1086
Tru9I TTAA 2 cut(s) 1023, 1086
TscAI CASTG 2 cut(s) 309, 484
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 8 cut(s) 492, 611, 639, 666, 806, 882, 897, 1176
TspRI CASTG 2 cut(s) 309, 484
Van91I CCANNNNNTGG 1 cut(s) 453
XapI RAATTY 4 cut(s) 64, 510, 845, 975
XceI RCATGY 1 cut(s) 1071
XspI CTAG 4 cut(s) 33, 540, 1106, 1194
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.