Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014693

Physical Location & Seq

Genomic Coordinates Reverse (-)

68807251 .. 68809170

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGTAAAGAGGAAATAACCCAGAAGTGTACTAGTCCTACTGGTGGCTTTGTTAGATCCTCGAATTCCAAAAAGACTAATAAGCAAAAGAAAAAGAACAGCAAAAAGAAAGCTGCTTCTGTTTTGACATCACCAACCCCACCTGCCTCTAATTCCTTACCATCACCAACCAAATCATCTCCATGTGTTCCTAATCCCGCTCCCATTAGACATTATCAACCACCCTCTTCAATCCCATTTCCATCTCTGCCATCACTGGATCTGCCCTCACCAAACTCGATTTTCAGGCCACCCAATGCTGATGTTGTTCGAAAGCCGAACAGTATTAGTACTGTTCCATTGCCTAACAAGGGGACTCATGGGTTTGAGATTCCCGGACATGGAAATGTTGTTGTTCCCAACTTGTGGAATCCCAATTGTGAGTACAACAGTGCTGATCTCAATAAGGAGAGTTCATCAGGAATTTTGGATCCGGGATTCGCATTTCGCCCTAGTTTGAATAATTTGCCTACTTTCGATAACTCCAACGCGATTTGGGCTCTCCCCAATTTTCCACAAAGAACACACCAATTTCATCACCAACCACCACCACCTCCTCCTTCATTGGTGAATGTCTCATCAGCTACTTCATTATCGTCATCATCATCTGTACTAAACTTTCACACACAGAGCCCCCTTCAAACCAAAGCTATCACAGCAACTATACTACACCAATGTGGTCAGAGGAAGAAAGGAGAAGGCTCTACCTGCTCAACTAAAATTTCGGAGTCCAATTCGAAGATTAGCATCAAAGAAAATGGGAGTGTTAATGGAGATTTTCTCACACTTGCCCCTCCTACAACTAATAGGACATGTCCGAACCCAAAGTTTAATTTTCCTCCAGCTTATCTAGCATTCCATAACCCTGAAGTCCCCGATTTCGCCTCATTTCCTTATAAATTTGCTTTAGTCTTATCATCTCATTCTCTAATTGCTTCTATCAAATCGTTACAGGGAAGTTCAGAAGATACAATTTTACAGTCAGGACCAAGTGGTTCAACTCCACAACAGGCTTTCTACACCTTCATCCCACCAGCAAAATCACAAATTGTTAAACCAGCAGCAACCATAAACAGTTGTAATGGTGAAGTAGGAGAAACTGTTGATCTCAATTTGAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

387

Amino Acids

41.41

Weight (kDa)

9.5

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18750 FvH4_3g18750 FvH4_3g18750
malus_domestica	MD03G1238800.v1.1 MD11G1258600.v1.1
prunus_persica	Prupe.4G171200_v2.0.a1
pyrus_communis	pycom11g22840
rosa_chinensis	RchiOBHm_Chr5g0031561
rosa_laevigata	RLG00000033324
rosa_multiflora	Rmu_sc0014784.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048740
rosa_rugosa	Rorug05G0127000
rosa_samantha	Rh5AG220200 Rh5BG219600 Rh5CG243000 Rh5DG224700
rosa_wichuraiana	Rw5G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	936, 1162
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	2 cut(s)	151, 755
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	1 cut(s)	530
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	4 cut(s)	51, 267, 464, 477
AcsI	RAATTY	4 cut(s)	64, 462, 759, 938
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	4 cut(s)	31, 331, 425, 651
AfiI	CCNNNNNNNGG	4 cut(s)	44, 350, 380, 405
AflIII	ACRYGT	1 cut(s)	851
AgsI	TTSAA	5 cut(s)	231, 499, 680, 1038, 1156
AhlI	ACTAGT	1 cut(s)	32
AleI	CACNNNNGTG	1 cut(s)	714
AluBI	AGCT	4 cut(s)	113, 623, 689, 884
AluI	AGCT	4 cut(s)	113, 623, 689, 884
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	4 cut(s)	51, 267, 464, 477
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	113, 1100
ApoI	RAATTY	4 cut(s)	64, 462, 759, 938
AspS9I	GGNCC	1 cut(s)	1025
AsuC2I	CCSGG	2 cut(s)	375, 474
AsuHPI	GGTGA	6 cut(s)	123, 156, 261, 569, 619, 1136
AsuII	TTCGAA	2 cut(s)	310, 776
AvaII	GGWCC	1 cut(s)	1025
BamHI	GGATCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	541, 674
BbvI	GCAGC	2 cut(s)	100, 1112
BccI	CCATC	3 cut(s)	169, 250, 259
BcnI	CCSGG	2 cut(s)	375, 474
BcoDI	GTCTC	1 cut(s)	619
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	3 cut(s)	33, 492, 890
BfuAI	ACCTGC	2 cut(s)	151, 755
BisI	GCNGC	2 cut(s)	114, 1101
BlsI	GCNGC	2 cut(s)	115, 1102
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	375, 474
Bme18I	GGWCC	1 cut(s)	1025
BmgT120I	GGNCC	1 cut(s)	1025
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	375, 474
BmsI	GCATC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	804, 836
BpmI	CTGGAG	1 cut(s)	864
Bpu14I	TTCGAA	2 cut(s)	310, 776
BpuMI	CCSGG	2 cut(s)	375, 474
BsaBI	GATNNNNATC	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	1125, 1155
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 350, 380, 405
Bse1I	ACTGG	2 cut(s)	46, 261
Bse3DI	GCAATG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	785
BseGI	GGATG	1 cut(s)	1065
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	4 cut(s)	44, 350, 380, 405
BseMI	GCAATG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	46, 261
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	2 cut(s)	100, 1112
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	375, 473
BslFI	GGGAC	2 cut(s)	367, 896
BslI	CCNNNNNNNGG	4 cut(s)	44, 350, 380, 405
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	367, 896
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	1 cut(s)	289
Bsp119I	TTCGAA	2 cut(s)	310, 776
Bsp1286I	GDGCHC	2 cut(s)	541, 674
Bsp143I	GATC	5 cut(s)	56, 259, 436, 469, 1144
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	471
BspMI	ACCTGC	2 cut(s)	151, 755
BspPI	GGATC	4 cut(s)	51, 267, 464, 477
BspT104I	TTCGAA	2 cut(s)	310, 776
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	46, 261
BssMI	GATC	5 cut(s)	56, 259, 436, 469, 1144
Bst4CI	ACNGT	6 cut(s)	323, 334, 431, 1020, 1115, 1141
Bst6I	CTCTTC	1 cut(s)	232
BstBI	TTCGAA	2 cut(s)	310, 776
BstF5I	GGATG	1 cut(s)	1065
BstFNI	CGCG	1 cut(s)	530
BstKTI	GATC	5 cut(s)	59, 262, 439, 472, 1147
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	5 cut(s)	56, 259, 436, 469, 1144
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 695, 747, 890
BstNSI	RCATGY	1 cut(s)	855
BstSCI	CCNGG	2 cut(s)	373, 472
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	100, 1112
BstX2I	RGATCY	3 cut(s)	56, 259, 469
BstYI	RGATCY	3 cut(s)	56, 259, 469
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	1065
BtsIMutI	CAGTG	2 cut(s)	254, 436
BveI	ACCTGC	2 cut(s)	151, 755
Cfr13I	GGNCC	1 cut(s)	1025
Csp6I	GTAC	4 cut(s)	30, 330, 424, 650
CviAII	CATG	4 cut(s)	183, 359, 380, 852
CviQI	GTAC	4 cut(s)	30, 330, 424, 650
DpnI	GATC	5 cut(s)	58, 261, 438, 471, 1146
DpnII	GATC	5 cut(s)	56, 259, 436, 469, 1144
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	541, 674
Eco47I	GGWCC	1 cut(s)	1025
Eco57I	CTGAAG	1 cut(s)	927
EcoRI	GAATTC	1 cut(s)	64
EcoT38I	GRGCYC	2 cut(s)	541, 674
FaeI	CATG	4 cut(s)	186, 362, 383, 855
FaiI	YATR	9 cut(s)	184, 360, 381, 704, 853, 900, 936, 1109, 1162
FaqI	GGGAC	2 cut(s)	367, 896
FatI	CATG	4 cut(s)	182, 358, 379, 851
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	114, 1101
FokI	GGATG	1 cut(s)	1052
FriOI	GRGCYC	2 cut(s)	541, 674
Fsp4HI	GCNGC	2 cut(s)	114, 1101
FspBI	CTAG	3 cut(s)	33, 492, 890
GluI	GCNGC	2 cut(s)	114, 1101
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	375, 473
Hin1II	CATG	4 cut(s)	186, 362, 383, 855
HinfI	GANTC	5 cut(s)	355, 370, 409, 477, 767
HpaII	CCGG	2 cut(s)	375, 473
HphI	GGTGA	6 cut(s)	123, 156, 261, 569, 619, 1136
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	4 cut(s)	723, 766, 858, 1003
Hpy188III	TCNNGA	2 cut(s)	459, 1023
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	4 cut(s)	609, 686, 731, 1072
HpyCH4III	ACNGT	6 cut(s)	323, 334, 431, 1020, 1115, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 695, 747, 890
Hsp92II	CATG	4 cut(s)	186, 362, 383, 855
Kzo9I	GATC	5 cut(s)	56, 259, 436, 469, 1144
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	2 cut(s)	100, 1112
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	3 cut(s)	33, 492, 890
MaeIII	GTNAC	1 cut(s)	987
MalI	GATC	5 cut(s)	58, 261, 438, 471, 1146
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	5 cut(s)	56, 259, 436, 469, 1144
MboII	GAAGA	4 cut(s)	219, 739, 790, 1016
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	3 cut(s)	56, 259, 469
MhlI	GDGCHC	2 cut(s)	541, 674
MlyI	GAGTC	2 cut(s)	349, 776
MmeI	TCCRAC	1 cut(s)	549
MseI	TTAA	3 cut(s)	807, 870, 1092
MslI	CAYNNNNRTG	3 cut(s)	181, 384, 714
MspI	CCGG	2 cut(s)	375, 473
MspR9I	CCNGG	2 cut(s)	375, 474
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	893
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	4 cut(s)	536, 695, 747, 890
NciI	CCSGG	2 cut(s)	375, 474
NdeII	GATC	5 cut(s)	56, 259, 436, 469, 1144
NlaIII	CATG	4 cut(s)	186, 362, 383, 855
NlaIV	GGNNCC	1 cut(s)	471
NspI	RCATGY	1 cut(s)	855
NspV	TTCGAA	2 cut(s)	310, 776
OliI	CACNNNNGTG	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	151
PciI	ACATGT	1 cut(s)	851
PctI	GAATGC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	370, 409, 477
PflMI	CCANNNNNTGG	1 cut(s)	405
PfoI	TCCNGGA	2 cut(s)	373, 472
PkrI	GCNGC	2 cut(s)	115, 1102
PleI	GAGTC	2 cut(s)	349, 775
PpsI	GAGTC	2 cut(s)	349, 775
PscI	ACATGT	1 cut(s)	851
PsiI	TTATAA	2 cut(s)	936, 1162
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	1025
PsuI	RGATCY	3 cut(s)	56, 259, 469
RsaI	GTAC	4 cut(s)	31, 331, 425, 651
RsaNI	GTAC	4 cut(s)	30, 330, 424, 650
RseI	CAYNNNNRTG	3 cut(s)	181, 384, 714
SaqAI	TTAA	3 cut(s)	807, 870, 1092
SatI	GCNGC	2 cut(s)	114, 1101
Sau3AI	GATC	5 cut(s)	56, 259, 436, 469, 1144
Sau96I	GGNCC	1 cut(s)	1025
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	2 cut(s)	349, 776
ScrFI	CCNGG	2 cut(s)	375, 474
SduI	GDGCHC	2 cut(s)	541, 674
SetI	ASST	8 cut(s)	115, 145, 595, 625, 691, 749, 886, 1064
SfaNI	GCATC	1 cut(s)	795
SfuI	TTCGAA	2 cut(s)	310, 776
SinI	GGWCC	1 cut(s)	1025
SmiMI	CAYNNNNRTG	3 cut(s)	181, 384, 714
SpeI	ACTAGT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	3 cut(s)	33, 492, 890
StyD4I	CCNGG	2 cut(s)	373, 472
TaaI	ACNGT	6 cut(s)	323, 334, 431, 1020, 1115, 1141
TaqI	TCGA	5 cut(s)	62, 278, 310, 516, 776
TatI	WGTACW	4 cut(s)	29, 329, 423, 649
TfiI	GAWTC	3 cut(s)	370, 409, 477
Tru1I	TTAA	3 cut(s)	807, 870, 1092
Tru9I	TTAA	3 cut(s)	807, 870, 1092
TscAI	CASTG	2 cut(s)	261, 436
TseI	GCWGC	2 cut(s)	113, 1100
TspDTI	ATGAA	5 cut(s)	444, 563, 591, 618, 1054
TspRI	CASTG	2 cut(s)	261, 436
Van91I	CCANNNNNTGG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	1025
XapI	RAATTY	4 cut(s)	64, 462, 759, 938
XceI	RCATGY	1 cut(s)	855
XspI	CTAG	3 cut(s)	33, 492, 890
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.