FvH4_3g19780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007332
Physical Location & Seq
Reverse (-)
12935144 .. 12943867
8724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19780.t1

Sequence Viewer

Length: 1263 bp
ATGTCAAAAGACCGCCTTGTAAAGAGCGTCACGAAGTTCGCTGATGTCCAATACAAGCTCTTCACCAAACGCTATGGTCAGCAGCTCATCGACATTTTCGAGTTCCCTATTAAGCTTGTGCTCTCTCCTTTCACTATCGCCTTTGACGTCGCCGGCTCCGCCCAACGTGGCTTTGGCGTCCCCGAGTTGATTTCCAAGCTCTCCTGCGCCTCAATCTTTGTTGTAGCTACTCTAGGGACTTATGACATAGCCATGGAGATGGGAAAGAAGGTGATATGCCAGAGGAACTGTGAAACCTGCAACGGTTGGCAGGCATTGCAGTGTGCCATGTGCAAAGGATCAGGGAGGGTGCACTACCAAGTGAAAAATTACCCCTTGAAAAGTGGGGAGAGGGAAACGGCTGAATGTGTTGCAGCTGCTATTGCTGACAATCGCGCTGAATTGGTTCATCTTCCATCTGCCATAGATCTTCATACACCATTGCCATCTAAAGACTGCCTGACCTGTGATGGCACGGGTGTAATGAGCTGTCCTGAGTGCAAAAACAAACTACAAGTCCGAATCTCTGCAGATGATATAATGGAGCCTCCCTGGAAAGCCTACAATGTTATGAAGAAGATGGACTACCCTTATGAGCATATTGTGGACAGCATGAAAGATCCCAGCATCGCTGCATTTTGGTTGTTTACCTTGCCTCGGGTTGTGGGTGGTTATGAGTATGATGATGATGTCAAGCAAAAACTTTGGTGGCAATACAAGGAATCTATGCGGTACGATCAACTTCGTGATGTGGTGGCTAAGCGAAAACCTGGCTGGGAGCACTTGCAGGAGGCGTTGATCTCCATAGATCCTGCTCGTGCGAGGGATGATCCTGTTATTGTAAAAAATGTCCCTTTCTATAAAGCAAAGAAAGCTCTTGAAGCAGAAGTCATGAAACTGAATCCTCCACCAAGGCCACAAAACTGGGGTGAATTGGACCTTCCATTGAATGCATCTTCCTGGAGCAAGGAGGATCTCAAAGATCCTGAAAAGTTTTATGAAATGACTGTTCTTCTTAATGCTCAGCGAGAAATTGCTGACAAAATGTTGGATGCTCAATGGGAGACTAAATGGCGTCAAGAAAAGTTGAATGAGATGTTGGCGGAGAAGGTACGGCCATACATGCAGAAGATCGACAATGGGACCCTCTCTCAGCCTATCATACTACCACAACAAGATCAAAATCAGAAGAGGAACCGACTTCGGAGATGGTGGTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

48.45

Weight (kDa)

8.47

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AtTam37 PF25112 88 - 198 6.5e-61 AtTam37 zinc finger region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 305
AccII CGCG 1 cut(s) 435
AciI CCGC 4 cut(s) 13, 159, 769, 1142
AclWI GGATC 6 cut(s) 346, 653, 842, 863, 1016, 1020
AcoI YGGCCR 1 cut(s) 1154
AcyI GRCGYC 3 cut(s) 147, 177, 1114
AfaI GTAC 2 cut(s) 773, 1152
AfiI CCNNNNNNNGG 1 cut(s) 696
AgsI TTSAA 4 cut(s) 379, 920, 988, 1129
AjnI CCWGG 3 cut(s) 590, 808, 998
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
AluBI AGCT 8 cut(s) 58, 85, 115, 199, 227, 416, 528, 914
AluI AGCT 8 cut(s) 58, 85, 115, 199, 227, 416, 528, 914
Alw21I GWGCWC 3 cut(s) 123, 354, 822
Alw26I GTCTC 1 cut(s) 1097
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 6 cut(s) 346, 653, 842, 863, 1016, 1020
Ama87I CYCGRG 2 cut(s) 182, 696
AoxI GGCC 2 cut(s) 953, 1154
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 4 cut(s) 82, 413, 416, 671
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 209, 437
AspS9I GGNCC 2 cut(s) 976, 1182
AsuHPI GGTGA 3 cut(s) 55, 283, 980
AvaI CYCGRG 2 cut(s) 182, 696
AvaII GGWCC 2 cut(s) 976, 1182
BaeGI GKGCMC 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BauI CACGAG 1 cut(s) 855
Bbv12I GWGCWC 3 cut(s) 123, 354, 822
BbvI GCAGC 4 cut(s) 94, 403, 425, 658
BccI CCATC 6 cut(s) 253, 463, 493, 503, 613, 1242
BceAI ACGGC 2 cut(s) 414, 1169
BciT130I CCWGG 3 cut(s) 592, 810, 1000
BcoDI GTCTC 1 cut(s) 1097
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 305
BglII AGATCT 1 cut(s) 466
BisI GCNGC 4 cut(s) 83, 414, 417, 672
BlpI GCTNAGC 2 cut(s) 798, 1062
BlsI GCNGC 4 cut(s) 84, 415, 418, 673
Bme1390I CCNGG 3 cut(s) 592, 810, 1000
Bme18I GGWCC 2 cut(s) 976, 1182
BmeT110I CYCGRG 2 cut(s) 182, 696
BmgT120I GGNCC 2 cut(s) 976, 1182
BmiI GGNNCC 5 cut(s) 157, 585, 1183, 1184, 1235
BmrFI CCNGG 3 cut(s) 592, 810, 1000
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 3 cut(s) 675, 1001, 1081
BmuI ACTGGG 1 cut(s) 973
BpmI CTGGAG 1 cut(s) 1021
Bpu1102I GCTNAGC 2 cut(s) 798, 1062
BsaBI GATNNNNATC 1 cut(s) 1221
BsaHI GRCGYC 3 cut(s) 147, 177, 1114
BsaJI CCNNGG 4 cut(s) 252, 590, 695, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 696
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 968
Bse3DI GCAATG 2 cut(s) 314, 479
Bse8I GATNNNNATC 1 cut(s) 1221
BseBI CCWGG 3 cut(s) 592, 810, 1000
BseDI CCNNGG 4 cut(s) 252, 590, 695, 950
BseGI GGATG 2 cut(s) 871, 1096
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 1 cut(s) 696
BseMI GCAATG 2 cut(s) 314, 479
BseMII CTCAG 3 cut(s) 525, 1076, 1205
BseNI ACTGG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 4 cut(s) 94, 403, 425, 658
BseYI CCCAGC 2 cut(s) 662, 813
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 2 cut(s) 955, 1156
BsiHKAI GWGCWC 3 cut(s) 123, 354, 822
BsiHKCI CYCGRG 2 cut(s) 182, 696
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 4 cut(s) 164, 250, 875, 1195
BslI CCNNNNNNNGG 1 cut(s) 696
BsmAI GTCTC 1 cut(s) 1097
BsmFI GGGAC 4 cut(s) 164, 250, 875, 1195
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 2 cut(s) 955, 1156
BsoBI CYCGRG 2 cut(s) 182, 696
Bsp1286I GDGCHC 3 cut(s) 123, 354, 822
Bsp1720I GCTNAGC 2 cut(s) 798, 1062
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 4 cut(s) 13, 159, 769, 1142
BspANI GGCC 2 cut(s) 955, 1156
BspCNI CTCAG 3 cut(s) 526, 1075, 1204
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 5 cut(s) 157, 585, 1183, 1184, 1235
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 6 cut(s) 346, 653, 842, 863, 1016, 1020
BspQI GCTCTTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 314, 479
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 968
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 4 cut(s) 252, 590, 695, 950
BssNI GRCGYC 3 cut(s) 147, 177, 1114
BssSI CACGAG 1 cut(s) 855
BssT1I CCWWGG 2 cut(s) 252, 950
Bst2BI CACGAG 1 cut(s) 855
Bst2UI CCWGG 3 cut(s) 592, 810, 1000
Bst4CI ACNGT 3 cut(s) 290, 305, 1048
Bst6I CTCTTC 2 cut(s) 65, 1223
BstACI GRCGYC 3 cut(s) 147, 177, 1114
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 154, 312
BstDEI CTNAG 4 cut(s) 534, 798, 1062, 1191
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 871, 1096
BstFNI CGCG 1 cut(s) 435
BstHHI GCGC 2 cut(s) 209, 437
BstMAI GTCTC 1 cut(s) 1097
BstMWI GCNNNNNNNGC 6 cut(s) 158, 316, 422, 911, 920, 1162
BstNI CCWGG 3 cut(s) 592, 810, 1000
BstNSI RCATGY 1 cut(s) 1165
BstSCI CCNGG 3 cut(s) 590, 808, 998
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 94, 403, 425, 658
BstX2I RGATCY 5 cut(s) 466, 658, 847, 1012, 1021
BstXI CCANNNNNNTGG 2 cut(s) 259, 963
BstYI RGATCY 5 cut(s) 466, 658, 847, 1012, 1021
BsuRI GGCC 2 cut(s) 955, 1156
BtgI CCRYGG 1 cut(s) 252
BtgZI GCGATG 1 cut(s) 652
BtsCI GGATG 2 cut(s) 871, 1096
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 154, 312
CciI TCATGA 1 cut(s) 930
CfoI GCGC 2 cut(s) 209, 437
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 976, 1182
CseI GACGC 3 cut(s) 16, 166, 1103
Csp6I GTAC 2 cut(s) 772, 1151
CviAII CATG 5 cut(s) 253, 328, 652, 931, 1162
CviQI GTAC 2 cut(s) 772, 1151
DdeI CTNAG 4 cut(s) 534, 798, 1062, 1191
EaeI YGGCCR 1 cut(s) 1154
Eam1104I CTCTTC 2 cut(s) 65, 1223
EarI CTCTTC 2 cut(s) 65, 1223
EciI GGCGGA 2 cut(s) 148, 1157
Eco130I CCWWGG 2 cut(s) 252, 950
Eco47I GGWCC 2 cut(s) 976, 1182
Eco88I CYCGRG 2 cut(s) 182, 696
EcoO109I RGGNCCY 1 cut(s) 1182
EcoRII CCWGG 3 cut(s) 590, 808, 998
EcoT14I CCWWGG 2 cut(s) 252, 950
EcoT22I ATGCAT 1 cut(s) 994
ErhI CCWWGG 2 cut(s) 252, 950
FaeI CATG 5 cut(s) 256, 331, 655, 934, 1165
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 4 cut(s) 164, 250, 875, 1195
FatI CATG 5 cut(s) 252, 327, 651, 930, 1161
Fnu4HI GCNGC 4 cut(s) 83, 414, 417, 672
FokI GGATG 2 cut(s) 878, 1103
Fsp4HI GCNGC 4 cut(s) 83, 414, 417, 672
FspBI CTAG 1 cut(s) 233
GlaI GCGC 2 cut(s) 208, 436
GluI GCNGC 4 cut(s) 83, 414, 417, 672
GsaI CCCAGC 2 cut(s) 666, 817
GsuI CTGGAG 1 cut(s) 1021
HaeIII GGCC 2 cut(s) 955, 1156
HapII CCGG 1 cut(s) 153
HgaI GACGC 3 cut(s) 16, 166, 1103
HhaI GCGC 2 cut(s) 209, 437
Hin1I GRCGYC 3 cut(s) 147, 177, 1114
Hin1II CATG 5 cut(s) 256, 331, 655, 934, 1165
Hin6I GCGC 2 cut(s) 207, 435
HinP1I GCGC 2 cut(s) 207, 435
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 561, 761, 940
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 55, 283, 980
Hpy166II GTNNAC 3 cut(s) 352, 646, 687
Hpy188I TCNGA 3 cut(s) 560, 1227, 1245
Hpy188III TCNNGA 7 cut(s) 31, 533, 785, 917, 931, 1025, 1118
Hpy8I GTNNAC 3 cut(s) 352, 646, 687
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 262, 989, 1141
HpyCH4III ACNGT 3 cut(s) 290, 305, 1048
HpyCH4IV ACGT 2 cut(s) 147, 166
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 316, 422, 911, 920, 1162
HpyF3I CTNAG 4 cut(s) 534, 798, 1062, 1191
HpySE526I ACGT 2 cut(s) 147, 166
Hsp92I GRCGYC 3 cut(s) 147, 177, 1114
Hsp92II CATG 5 cut(s) 256, 331, 655, 934, 1165
HspAI GCGC 2 cut(s) 207, 435
KflI GGGWCCC 1 cut(s) 1182
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 4 cut(s) 161, 583, 817, 1002
Lsp1109I GCAGC 4 cut(s) 94, 403, 425, 658
LweI GCATC 3 cut(s) 675, 1001, 1081
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 147, 166
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 9 cut(s) 52, 443, 461, 625, 628, 987, 1043, 1180, 1240
MflI RGATCY 5 cut(s) 466, 658, 847, 1012, 1021
MhlI GDGCHC 3 cut(s) 123, 354, 822
MluCI AATT 4 cut(s) 367, 440, 971, 1071
MmeI TCCRAC 1 cut(s) 1068
Mph1103I ATGCAT 1 cut(s) 994
MroNI GCCGGC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 111, 1056, 1261
MslI CAYNNNNRTG 3 cut(s) 251, 257, 319
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 592, 810, 1000
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 3 cut(s) 592, 810, 1000
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 6 cut(s) 158, 316, 422, 911, 920, 1162
NaeI GCCGGC 1 cut(s) 154
NcoI CCATGG 1 cut(s) 252
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 5 cut(s) 256, 331, 655, 934, 1165
NlaIV GGNNCC 5 cut(s) 157, 585, 1183, 1184, 1235
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 1165
PagI TCATGA 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 144
PctI GAATGC 1 cut(s) 994
PdiI GCCGGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 3 cut(s) 561, 761, 940
PfoI TCCNGGA 1 cut(s) 998
PkrI GCNGC 4 cut(s) 84, 415, 418, 673
PpuMI RGGWCCY 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 1182
Psp6I CCWGG 3 cut(s) 590, 808, 998
PspFI CCCAGC 2 cut(s) 662, 813
PspGI CCWGG 3 cut(s) 590, 808, 998
PspN4I GGNNCC 5 cut(s) 157, 585, 1183, 1184, 1235
PspPI GGNCC 2 cut(s) 976, 1182
PspPPI RGGWCCY 1 cut(s) 1182
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 5 cut(s) 466, 658, 847, 1012, 1021
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 773, 1152
RsaNI GTAC 2 cut(s) 772, 1151
RseI CAYNNNNRTG 3 cut(s) 251, 257, 319
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 3 cut(s) 111, 1056, 1261
SatI GCNGC 4 cut(s) 83, 414, 417, 672
Sau96I GGNCC 2 cut(s) 976, 1182
ScrFI CCNGG 3 cut(s) 592, 810, 1000
SduI GDGCHC 3 cut(s) 123, 354, 822
SfaNI GCATC 3 cut(s) 675, 1001, 1081
SfcI CTRYAG 1 cut(s) 567
SinI GGWCC 2 cut(s) 976, 1182
SmiMI CAYNNNNRTG 3 cut(s) 251, 257, 319
Sse9I AATT 4 cut(s) 367, 440, 971, 1071
SsiI CCGC 4 cut(s) 13, 159, 769, 1142
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 590, 808, 998
StyI CCWWGG 2 cut(s) 252, 950
TaaI ACNGT 3 cut(s) 290, 305, 1048
TaiI ACGT 2 cut(s) 150, 169
TaqI TCGA 3 cut(s) 90, 99, 1173
TasI AATT 4 cut(s) 367, 440, 971, 1071
TfiI GAWTC 3 cut(s) 561, 761, 940
Tru1I TTAA 3 cut(s) 111, 1056, 1261
Tru9I TTAA 3 cut(s) 111, 1056, 1261
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 82, 413, 416, 671
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 6 cut(s) 437, 461, 626, 668, 947, 1053
TspRI CASTG 1 cut(s) 326
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 976, 1182
XceI RCATGY 1 cut(s) 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 233
ZraI GACGTC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.