Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007332

Physical Location & Seq

Genomic Coordinates Reverse (-)

10653809 .. 10662179

Gene Structure 8371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTCAACAGGAAGGGACCGTCTACTGAAGAACCTGAAGAAATTTGCTGATTTTCAATACAAGATCTTCACAGCTCGATATGGACAACAGCTCATTGACATTTTCGAGTTCCCTGTTAAGCTTGTTCTCTCTCCTTTCACTCTTGCCATTGACATTGCTGGCTCTGCTCCACGTGGGTTTGGCGTGCCCGAGTTGGTTTCCAAGCTTTCTTACATGTCAATCTTTGCAGTTGCTACCCTAGGGACTTATGACATAGCATTAGAGCTGGGAAAGAAGGTGATATGTCAGAGGAACTGTGGAACCTGCAATGGTTGGCAGGCATTGCGGTGTACCATGTGTAGAGGATCAGGGAGGGTGCACTACCAAGTGAAAAATTACACCTTGAAAAGTGGAGAGAAGGCAACAGCTGAATGTATTGCAGATGCCATTGCTGATAATCGGGCTGAGTTGGTTCACCTTCCATCCTCCATAAATCTTAATGTGCCATTACCATCTAAAGACTGCCCGACCTGTGATGGCACGGGTGTGATGGGCTGTCATGAATGCAAGGACAAATTACAAGTCAGAATCTCTGCAGATGATATCATGGAGCCTCCATGGAAAGCCTACAATGTTTTGAGGAAGATGGACTACCCCTATGAGCATATAGTTCACAGCATGAAAGATCCCAGCATCGCTGCATTTTGGCTGTTTACCTTGCCTCAAGTTGCAGGTGGATTCGATTTTGATGATGATGTCAAGAAGAAAATTTGGTGGCAATACAAGGAGTCTATGCGGTATGATCAACTTCGTGATGTGGTGGCCAAGCGGAAACCTGGCTGGGAGAACTTGCAGGAAGCCTTGATCTCCATAGATCCTGCTCGAGCCAGGGAAGATCCTGTTATTGTAAAAAATATCCCTTACTATAAAGCCAAGAAAGCACTTGAAGCAGAAGTCATGAAACTTGATCCTCCACCAAGGCCACAAAATTGGGGTGAACTGGACCTTCCATTGAATGCATCTTCTTGGAGCAAGGAGGATCTCAAAAATCCTGAAAAGTTCTATGAAATGACTGTTCTTCTAAATGCTCAAAGAGAAATTGCTGATAAAATTTTGGATTCACAGTGGGAGAATAGATGGCGCCAACAAAGGTTGAATGAGATGTTGGAGGAGAAGGTACGTCCATACATGCAGAACATTGACAGTGGGATCCTCTCTCAGCCTATTATATTACCATCACAAGATCAGAATCAGAAGTGCTCAACTTCTTGCTATTGCAGTATTTGGTCATCACTGTTAAGATATTTGGTCTATGTATATAAGGCTGCCTTCTCTTGTACTTGTGTCTTAAATTCCCATCTCACTCCACATACCCTAAAATCCAACTCTGAAAATAAACATCAACTTGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

465

Amino Acids

53.0

Weight (kDa)

8.47

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53860 AT5G53860 AT5G53860 AT5G53860 AT5G53860
fragaria_vesca	FvH4_3g19780
malus_domestica	MD03G1229200.v1.1 MD11G1250000.v1.1
prunus_persica	Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1
pyrus_communis	pycom03g17700 pycom11g22120
rosa_chinensis	RchiOBHm_Chr5g0033181
rosa_laevigata	RLG00000033454
rosa_multiflora	Rmu_sc0009377.1_g000002 Rmu_ssc0000299.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046800
rosa_rugosa	Rorug05G0137300
rosa_samantha	Rh5AG229100 Rh5BG230200 Rh5CG258100 Rh5DG234900
rosa_wichuraiana	Rw5G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	701
Acc36I	ACCTGC	2 cut(s)	311, 701
AccB1I	GGYRCC	1 cut(s)	1119
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	3 cut(s)	325, 775, 808
AclWI	GGATC	8 cut(s)	352, 659, 848, 869, 941, 1026, 1183, 1196
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	4 cut(s)	41, 747, 1089, 1330
AcuI	CTGAAG	2 cut(s)	47, 56
AcvI	CACGTG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	1120
AfaI	GTAC	3 cut(s)	331, 1158, 1318
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	5 cut(s)	56, 385, 926, 994, 1135
AjnI	CCWGG	2 cut(s)	814, 866
AjuI	GAANNNNNNNTTGG	2 cut(s)	1127, 1159
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	6 cut(s)	74, 91, 121, 205, 265, 407
AluI	AGCT	6 cut(s)	74, 91, 121, 205, 265, 407
Alw21I	GWGCWC	2 cut(s)	360, 1241
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	8 cut(s)	352, 659, 848, 869, 941, 1026, 1183, 1196
Ama87I	CYCGRG	2 cut(s)	188, 861
AoxI	GGCC	2 cut(s)	801, 959
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	677, 1304
ApoI	RAATTY	4 cut(s)	41, 747, 1089, 1330
ArsI	GACNNNNNNTTYG	2 cut(s)	546, 578
AspA2I	CCTAGG	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	2 cut(s)	16, 982
AsuHPI	GGTGA	3 cut(s)	289, 446, 986
AvaI	CYCGRG	2 cut(s)	188, 861
AvaII	GGWCC	2 cut(s)	16, 982
AvrII	CCTAGG	1 cut(s)	238
BaeGI	GKGCMC	2 cut(s)	189, 360
BalI	TGGCCA	1 cut(s)	803
BamHI	GGATCC	1 cut(s)	1188
BanI	GGYRCC	1 cut(s)	1119
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbrPI	CACGTG	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	360, 1241
BbvI	GCAGC	2 cut(s)	664, 1291
BccI	CCATC	8 cut(s)	469, 499, 509, 523, 619, 1110, 1222, 1344
BciT130I	CCWGG	2 cut(s)	816, 868
BclI	TGATCA	1 cut(s)	781
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	1123
BfuAI	ACCTGC	2 cut(s)	311, 701
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	2 cut(s)	678, 1305
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	2 cut(s)	679, 1306
Bme1390I	CCNGG	2 cut(s)	816, 868
Bme18I	GGWCC	2 cut(s)	16, 982
BmeT110I	CYCGRG	2 cut(s)	188, 861
BmgT120I	GGNCC	2 cut(s)	16, 982
BmiI	GGNNCC	5 cut(s)	17, 301, 591, 1121, 1190
BmrFI	CCNGG	2 cut(s)	816, 868
BmsI	GCATC	3 cut(s)	412, 681, 1007
BpuEI	CTTGAG	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	1227
BsaHI	GRCGYC	1 cut(s)	1120
BsaJI	CCNNGG	4 cut(s)	238, 596, 867, 956
Bse1I	ACTGG	1 cut(s)	984
Bse3DI	GCAATG	4 cut(s)	153, 313, 320, 426
Bse8I	GATNNNNATC	1 cut(s)	1227
BseBI	CCWGG	2 cut(s)	816, 868
BseDI	CCNNGG	4 cut(s)	238, 596, 867, 956
BseGI	GGATG	1 cut(s)	461
BseJI	GATNNNNATC	1 cut(s)	1227
BseMI	GCAATG	4 cut(s)	153, 313, 320, 426
BseMII	CTCAG	2 cut(s)	435, 1211
BseNI	ACTGG	1 cut(s)	984
BseRI	GAGGAG	1 cut(s)	1163
BseSI	GKGCMC	2 cut(s)	189, 360
BseXI	GCAGC	2 cut(s)	664, 1291
BseYI	CCCAGC	3 cut(s)	265, 668, 819
BshFI	GGCC	2 cut(s)	803, 961
BshNI	GGYRCC	1 cut(s)	1119
BsiHKAI	GWGCWC	2 cut(s)	360, 1241
BsiHKCI	CYCGRG	2 cut(s)	188, 861
BslFI	GGGAC	2 cut(s)	29, 256
BsmFI	GGGAC	2 cut(s)	29, 256
BsmI	GAATGC	2 cut(s)	548, 1000
BsnI	GGCC	2 cut(s)	803, 961
BsoBI	CYCGRG	2 cut(s)	188, 861
Bsp1286I	GDGCHC	3 cut(s)	189, 360, 1241
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	3 cut(s)	325, 775, 808
BspANI	GGCC	2 cut(s)	803, 961
BspCNI	CTCAG	2 cut(s)	436, 1210
BspHI	TCATGA	2 cut(s)	538, 936
BspLI	GGNNCC	5 cut(s)	17, 301, 591, 1121, 1190
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	2 cut(s)	311, 701
BspPI	GGATC	8 cut(s)	352, 659, 848, 869, 941, 1026, 1183, 1196
BspT107I	GGYRCC	1 cut(s)	1119
BsrDI	GCAATG	4 cut(s)	153, 313, 320, 426
BsrI	ACTGG	1 cut(s)	984
BssECI	CCNNGG	4 cut(s)	238, 596, 867, 956
BssNI	GRCGYC	1 cut(s)	1120
BssT1I	CCWWGG	3 cut(s)	238, 596, 956
Bst2UI	CCWGG	2 cut(s)	816, 868
Bst4CI	ACNGT	6 cut(s)	20, 296, 1054, 1104, 1184, 1275
BstACI	GRCGYC	1 cut(s)	1120
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	160, 185, 318
BstDEI	CTNAG	2 cut(s)	444, 1197
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	1123
BstHHI	GCGC	1 cut(s)	1122
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 322, 917, 926
BstNI	CCWGG	2 cut(s)	816, 868
BstNSI	RCATGY	2 cut(s)	217, 1171
BstSCI	CCNGG	2 cut(s)	814, 866
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	2 cut(s)	189, 360
BstV1I	GCAGC	2 cut(s)	664, 1291
BstX2I	RGATCY	6 cut(s)	63, 664, 853, 874, 1018, 1188
BstXI	CCANNNNNNTGG	1 cut(s)	969
BstYI	RGATCY	6 cut(s)	63, 664, 853, 874, 1018, 1188
BsuRI	GGCC	2 cut(s)	803, 961
BtgI	CCRYGG	1 cut(s)	596
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	461
BtsIMutI	CAGTG	3 cut(s)	1109, 1189, 1271
BveI	ACCTGC	2 cut(s)	311, 701
Cac8I	GCNNGC	3 cut(s)	160, 185, 318
CciI	TCATGA	2 cut(s)	538, 936
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	2 cut(s)	16, 982
Csp6I	GTAC	3 cut(s)	330, 1157, 1317
CviAII	CATG	8 cut(s)	214, 334, 539, 586, 597, 658, 937, 1168
CviQI	GTAC	3 cut(s)	330, 1157, 1317
DdeI	CTNAG	2 cut(s)	444, 1197
DinI	GGCGCC	1 cut(s)	1121
EaeI	YGGCCR	1 cut(s)	801
Eco130I	CCWWGG	3 cut(s)	238, 596, 956
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	16, 982
Eco57I	CTGAAG	2 cut(s)	47, 56
Eco72I	CACGTG	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	188, 861
EcoRII	CCWGG	2 cut(s)	814, 866
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	238, 596, 956
EcoT22I	ATGCAT	1 cut(s)	1000
EgeI	GGCGCC	1 cut(s)	1121
EheI	GGCGCC	1 cut(s)	1121
ErhI	CCWWGG	3 cut(s)	238, 596, 956
FaeI	CATG	8 cut(s)	217, 337, 542, 589, 600, 661, 940, 1171
FalI	AAGNNNNNCTT	2 cut(s)	1292, 1324
FaqI	GGGAC	2 cut(s)	29, 256
FatI	CATG	8 cut(s)	213, 333, 538, 585, 596, 657, 936, 1167
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	678, 1305
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	678, 1305
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	2 cut(s)	678, 1305
GsaI	CCCAGC	3 cut(s)	269, 672, 823
HaeII	RGCGCY	1 cut(s)	1123
HaeIII	GGCC	2 cut(s)	803, 961
HhaI	GCGC	1 cut(s)	1122
Hin1I	GRCGYC	1 cut(s)	1120
Hin1II	CATG	8 cut(s)	217, 337, 542, 589, 600, 661, 940, 1171
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	119, 203
HinfI	GANTC	5 cut(s)	567, 717, 767, 1097, 1228
HphI	GGTGA	3 cut(s)	289, 446, 986
Hpy166II	GTNNAC	8 cut(s)	6, 23, 330, 358, 454, 652, 693, 977
Hpy188I	TCNGA	5 cut(s)	288, 566, 1227, 1233, 1369
Hpy188III	TCNNGA	5 cut(s)	539, 739, 791, 937, 1031
Hpy8I	GTNNAC	8 cut(s)	6, 23, 330, 358, 454, 652, 693, 977
HpyAV	CCTTC	7 cut(s)	6, 268, 391, 467, 995, 1147, 1318
HpyCH4III	ACNGT	6 cut(s)	20, 296, 1054, 1104, 1184, 1275
HpyCH4IV	ACGT	2 cut(s)	172, 1159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 322, 917, 926
HpyF3I	CTNAG	2 cut(s)	444, 1197
HpySE526I	ACGT	2 cut(s)	172, 1159
Hsp92I	GRCGYC	1 cut(s)	1120
Hsp92II	CATG	8 cut(s)	217, 337, 542, 589, 600, 661, 940, 1171
HspAI	GCGC	1 cut(s)	1120
KasI	GGCGCC	1 cut(s)	1119
Ksp22I	TGATCA	1 cut(s)	781
LmnI	GCTCC	3 cut(s)	172, 589, 1008
Lsp1109I	GCAGC	2 cut(s)	664, 1291
LweI	GCATC	3 cut(s)	412, 681, 1007
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	2 cut(s)	172, 1159
MboII	GAAGA	8 cut(s)	40, 49, 58, 634, 754, 884, 993, 1049
MflI	RGATCY	6 cut(s)	63, 664, 853, 874, 1018, 1188
MhlI	GDGCHC	3 cut(s)	189, 360, 1241
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	8 cut(s)	41, 373, 554, 747, 967, 1077, 1089, 1330
MluNI	TGGCCA	1 cut(s)	803
Mly113I	GGCGCC	1 cut(s)	1120
MlyI	GAGTC	1 cut(s)	776
MmeI	TCCRAC	2 cut(s)	1125, 1386
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	1 cut(s)	1000
MscI	TGGCCA	1 cut(s)	803
MseI	TTAA	4 cut(s)	117, 477, 1277, 1328
MslI	CAYNNNNRTG	2 cut(s)	325, 524
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	816, 868
Mva1269I	GAATGC	2 cut(s)	548, 1000
MvaI	CCWGG	2 cut(s)	816, 868
MwoI	GCNNNNNNNGC	4 cut(s)	164, 322, 917, 926
NarI	GGCGCC	1 cut(s)	1120
NcoI	CCATGG	1 cut(s)	596
NlaIII	CATG	8 cut(s)	217, 337, 542, 589, 600, 661, 940, 1171
NlaIV	GGNNCC	5 cut(s)	17, 301, 591, 1121, 1190
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	2 cut(s)	217, 1171
OliI	CACNNNNGTG	1 cut(s)	524
PaeR7I	CTCGAG	1 cut(s)	861
PagI	TCATGA	2 cut(s)	538, 936
PaqCI	CACCTGC	1 cut(s)	701
PciI	ACATGT	1 cut(s)	213
PctI	GAATGC	2 cut(s)	548, 1000
PfeI	GAWTC	4 cut(s)	567, 717, 1097, 1228
PkrI	GCNGC	2 cut(s)	679, 1306
PleI	GAGTC	1 cut(s)	775
PluTI	GGCGCC	1 cut(s)	1123
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	775
Ppu21I	YACGTR	1 cut(s)	173
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	814, 866
PspCI	CACGTG	1 cut(s)	173
PspFI	CCCAGC	3 cut(s)	265, 668, 819
PspGI	CCWGG	2 cut(s)	814, 866
PspN4I	GGNNCC	5 cut(s)	17, 301, 591, 1121, 1190
PspPI	GGNCC	2 cut(s)	16, 982
PspXI	VCTCGAGB	1 cut(s)	861
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	6 cut(s)	63, 664, 853, 874, 1018, 1188
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	3 cut(s)	331, 1158, 1318
RsaNI	GTAC	3 cut(s)	330, 1157, 1317
RseI	CAYNNNNRTG	2 cut(s)	325, 524
SaqAI	TTAA	4 cut(s)	117, 477, 1277, 1328
SatI	GCNGC	2 cut(s)	678, 1305
Sau96I	GGNCC	2 cut(s)	16, 982
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	816, 868
SduI	GDGCHC	3 cut(s)	189, 360, 1241
SfaNI	GCATC	3 cut(s)	412, 681, 1007
SfcI	CTRYAG	1 cut(s)	573
SfoI	GGCGCC	1 cut(s)	1121
Sfr274I	CTCGAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	16, 982
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	325, 524
SmlI	CTYRAG	2 cut(s)	702, 861
SmoI	CTYRAG	2 cut(s)	702, 861
Sse9I	AATT	8 cut(s)	41, 373, 554, 747, 967, 1077, 1089, 1330
SsiI	CCGC	3 cut(s)	325, 775, 808
SspDI	GGCGCC	1 cut(s)	1119
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	814, 866
StyI	CCWWGG	3 cut(s)	238, 596, 956
TaaI	ACNGT	6 cut(s)	20, 296, 1054, 1104, 1184, 1275
TaiI	ACGT	2 cut(s)	175, 1162
TaqI	TCGA	4 cut(s)	76, 105, 720, 862
TasI	AATT	8 cut(s)	41, 373, 554, 747, 967, 1077, 1089, 1330
TatI	WGTACW	1 cut(s)	1316
TfiI	GAWTC	4 cut(s)	567, 717, 1097, 1228
Tru1I	TTAA	4 cut(s)	117, 477, 1277, 1328
Tru9I	TTAA	4 cut(s)	117, 477, 1277, 1328
TscAI	CASTG	3 cut(s)	1109, 1189, 1278
TseI	GCWGC	2 cut(s)	677, 1304
TspDTI	ATGAA	4 cut(s)	555, 674, 953, 1059
TspRI	CASTG	3 cut(s)	1109, 1189, 1278
VneI	GTGCAC	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	16, 982
XapI	RAATTY	4 cut(s)	41, 747, 1089, 1330
XceI	RCATGY	2 cut(s)	217, 1171
XhoI	CTCGAG	1 cut(s)	861
XmaJI	CCTAGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.