Rh5DG234900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007332
Physical Location & Seq
Reverse (-)
26821743 .. 26829105
7363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG234900.1

Sequence Viewer

Length: 1035 bp
ATGGTCCATAATTGCTCAAGTACGGTTTTGAAGTGTAGGAACTGTGAAACCTGCAACGGTTGGCAGGCATTGCGGTGTACCTTGTGCAAAGGATCAGGGAGGGTGCACTACCAAGTGAAAAATTACACATTGAAAAGTGGGGAGAGGGAAACGGCTGAATGTGTTGCAGATGCTATTGCTGACAGTCGTGCTGAGTTGGTTCATCTTCCATCTGCCATAAATCTTCATACACCATTGCCGTCTAAAGACTGCCTGACCTGTGATGGCACGGGTGTAATGAGCTGTCCTGAGTGCAAAAACAAATTACAAGTCAGAATCTCTGCAGATGATATAATGGAGCCTCCCTGGAAAGCCTACAATGTTATGAAGAAGATGGATTACCCTTATGAGCATATAGTTGACAGCATGAAAGATCCCAGCATTGCTGCATTTTGGCTATTTACCTTGCCTCGGGTTGTGGGTGGTTACGACTATGATGATGATGTCAAACAAAAACTTTGGTGGCAATACAAGGAATCTATGCGGTATGATCAACTTCGTGATGTGGTGGCCAAGCGAAAACCTGGCTGGGAGCACTTGCAGGAAGCCTTGATCTCCATAGATCCTGCTCGTGCAAGGGATGATCCTGTTATTGTAAAAAATATCCCTTTCTATAAAGCGAAGAAGGCACTTGAAGCAGAAGTCATGAAACTAAATCCTCCAGCAAGGCCACAAAATTGGGGTGAACTGGACCTTCCATTGGATGCATCTTCCTGGAGCAAGGAGGATCTCAAAGATCCTGGAAAGTTTTATGAAATGACCGTTCTTCTTAATGCTCAGCGAGAAATCGCTGACAAAATTTTGGATGCACAATGGGAGACTAAATGGCGTCAGGAAAAGTTGAATGAGATGTTGGCGGAGAAGGTACGGCCATACATGCAGAAGATCGACAGTGGGACCCTCTCTCAGCCTATTATACTACCACCACAAGAACAGAATCAGAAGGTTTTACCACTTTTTCTTATCATTCTTATATTAACTCTTGGCAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

39.48

Weight (kDa)

7.02

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AtTam37 PF25112 8 - 116 6.6e-58 AtTam37 zinc finger region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 59
AciI CCGC 3 cut(s) 73, 523, 896
AclWI GGATC 6 cut(s) 100, 407, 596, 617, 770, 774
AcoI YGGCCR 2 cut(s) 549, 908
AcsI RAATTY 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 868
AfaI GTAC 3 cut(s) 22, 79, 906
AfiI CCNNNNNNNGG 2 cut(s) 450, 739
AgsI TTSAA 4 cut(s) 31, 133, 674, 883
AjnI CCWGG 4 cut(s) 344, 562, 752, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 2 cut(s) 108, 576
Alw26I GTCTC 1 cut(s) 851
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 6 cut(s) 100, 407, 596, 617, 770, 774
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 3 cut(s) 549, 707, 908
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 837
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspS9I GGNCC 3 cut(s) 4, 730, 936
AsuHPI GGTGA 1 cut(s) 734
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 3 cut(s) 4, 730, 936
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 551
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BauI CACGAG 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 108, 576
BbvI GCAGC 1 cut(s) 412
BccI CCATC 3 cut(s) 217, 257, 367
BceAI ACGGC 3 cut(s) 168, 223, 923
BciT130I CCWGG 4 cut(s) 346, 564, 754, 780
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 851
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 426
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 4 cut(s) 346, 564, 754, 780
Bme18I GGWCC 3 cut(s) 4, 730, 936
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 4, 730, 936
BmiI GGNNCC 3 cut(s) 339, 937, 938
BmrFI CCNGG 4 cut(s) 346, 564, 754, 780
BmsI GCATC 4 cut(s) 160, 733, 755, 835
BpmI CTGGAG 2 cut(s) 684, 775
Bpu1102I GCTNAGC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 868
BsaJI CCNNGG 2 cut(s) 344, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 739
Bse1I ACTGG 1 cut(s) 732
Bse3DI GCAATG 3 cut(s) 68, 233, 420
BseBI CCWGG 4 cut(s) 346, 564, 754, 780
BseDI CCNNGG 2 cut(s) 344, 449
BseGI GGATG 3 cut(s) 625, 748, 850
BseLI CCNNNNNNNGG 2 cut(s) 450, 739
BseMI GCAATG 3 cut(s) 68, 233, 420
BseMII CTCAG 4 cut(s) 183, 279, 830, 959
BseNI ACTGG 1 cut(s) 732
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 2 cut(s) 416, 567
BshFI GGCC 3 cut(s) 551, 709, 910
BsiHKAI GWGCWC 2 cut(s) 108, 576
BsiHKCI CYCGRG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 949
BslI CCNNNNNNNGG 2 cut(s) 450, 739
BsmAI GTCTC 1 cut(s) 851
BsmFI GGGAC 1 cut(s) 949
BsnI GGCC 3 cut(s) 551, 709, 910
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 108, 576
Bsp143I GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 3 cut(s) 73, 523, 896
BspANI GGCC 3 cut(s) 551, 709, 910
BspCNI CTCAG 4 cut(s) 184, 280, 829, 958
BspHI TCATGA 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 339, 937, 938
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 6 cut(s) 100, 407, 596, 617, 770, 774
BsrDI GCAATG 3 cut(s) 68, 233, 420
BsrI ACTGG 1 cut(s) 732
BssECI CCNNGG 2 cut(s) 344, 449
BssMI GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
BssNI GRCGYC 1 cut(s) 868
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 4 cut(s) 346, 564, 754, 780
Bst4CI ACNGT 6 cut(s) 25, 44, 59, 185, 802, 932
BstACI GRCGYC 1 cut(s) 868
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 66, 1028
BstDEI CTNAG 4 cut(s) 192, 288, 816, 945
BstF5I GGATG 3 cut(s) 625, 748, 850
BstKTI GATC 9 cut(s) 95, 415, 532, 594, 604, 625, 769, 778, 927
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
BstMWI GCNNNNNNNGC 4 cut(s) 70, 665, 674, 916
BstNI CCWGG 4 cut(s) 346, 564, 754, 780
BstNSI RCATGY 1 cut(s) 919
BstSCI CCNGG 4 cut(s) 344, 562, 752, 778
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 4 cut(s) 412, 601, 766, 775
BstXI CCANNNNNNTGG 1 cut(s) 717
BstYI RGATCY 4 cut(s) 412, 601, 766, 775
BsuRI GGCC 3 cut(s) 551, 709, 910
BtsCI GGATG 3 cut(s) 625, 748, 850
BtsIMutI CAGTG 1 cut(s) 937
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 2 cut(s) 66, 1028
CciI TCATGA 1 cut(s) 684
Cfr13I GGNCC 3 cut(s) 4, 730, 936
CseI GACGC 1 cut(s) 857
Csp6I GTAC 3 cut(s) 21, 78, 905
CviAII CATG 3 cut(s) 406, 685, 916
CviQI GTAC 3 cut(s) 21, 78, 905
DdeI CTNAG 4 cut(s) 192, 288, 816, 945
DpnI GATC 9 cut(s) 94, 414, 531, 593, 603, 624, 768, 777, 926
DpnII GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
EaeI YGGCCR 2 cut(s) 549, 908
EciI GGCGGA 1 cut(s) 911
Eco47I GGWCC 3 cut(s) 4, 730, 936
Eco88I CYCGRG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 936
EcoRII CCWGG 4 cut(s) 344, 562, 752, 778
EcoT22I ATGCAT 1 cut(s) 748
FaeI CATG 3 cut(s) 409, 688, 919
FaqI GGGAC 1 cut(s) 949
FatI CATG 3 cut(s) 405, 684, 915
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 632, 755, 857
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 2 cut(s) 420, 571
GsuI CTGGAG 2 cut(s) 684, 775
HaeIII GGCC 3 cut(s) 551, 709, 910
HgaI GACGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 868
Hin1II CATG 3 cut(s) 409, 688, 919
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 315, 515, 976
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 4 cut(s) 78, 106, 400, 725
Hpy188I TCNGA 2 cut(s) 314, 981
Hpy188III TCNNGA 4 cut(s) 287, 539, 685, 872
Hpy8I GTNNAC 4 cut(s) 78, 106, 400, 725
HpyAV CCTTC 4 cut(s) 658, 743, 895, 976
HpyCH4III ACNGT 6 cut(s) 25, 44, 59, 185, 802, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 665, 674, 916
HpyF3I CTNAG 4 cut(s) 192, 288, 816, 945
Hsp92I GRCGYC 1 cut(s) 868
Hsp92II CATG 3 cut(s) 409, 688, 919
KflI GGGWCCC 1 cut(s) 936
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
LmnI GCTCC 3 cut(s) 337, 571, 756
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 4 cut(s) 160, 733, 755, 835
MaeIII GTNAC 1 cut(s) 464
MalI GATC 9 cut(s) 94, 414, 531, 593, 603, 624, 768, 777, 926
MboI GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
MboII GAAGA 8 cut(s) 197, 215, 379, 382, 673, 741, 797, 934
MflI RGATCY 4 cut(s) 412, 601, 766, 775
MhlI GDGCHC 2 cut(s) 108, 576
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 5 cut(s) 10, 121, 302, 715, 837
MluNI TGGCCA 1 cut(s) 551
MnlI CCTC 7 cut(s) 93, 138, 351, 459, 708, 757, 950
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 748
MscI TGGCCA 1 cut(s) 551
MseI TTAA 3 cut(s) 810, 1016, 1033
MslI CAYNNNNRTG 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 551
MspR9I CCNGG 4 cut(s) 346, 564, 754, 780
MvaI CCWGG 4 cut(s) 346, 564, 754, 780
MwoI GCNNNNNNNGC 4 cut(s) 70, 665, 674, 916
NdeII GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
NlaIII CATG 3 cut(s) 409, 688, 919
NlaIV GGNNCC 3 cut(s) 339, 937, 938
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 919
PagI TCATGA 1 cut(s) 684
PfeI GAWTC 3 cut(s) 315, 515, 976
PfoI TCCNGGA 2 cut(s) 752, 778
PkrI GCNGC 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 936
Psp6I CCWGG 4 cut(s) 344, 562, 752, 778
PspFI CCCAGC 2 cut(s) 416, 567
PspGI CCWGG 4 cut(s) 344, 562, 752, 778
PspN4I GGNNCC 3 cut(s) 339, 937, 938
PspPI GGNCC 3 cut(s) 4, 730, 936
PspPPI RGGWCCY 1 cut(s) 936
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 4 cut(s) 412, 601, 766, 775
RsaI GTAC 3 cut(s) 22, 79, 906
RsaNI GTAC 3 cut(s) 21, 78, 905
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 3 cut(s) 810, 1016, 1033
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 9 cut(s) 92, 412, 529, 591, 601, 622, 766, 775, 924
Sau96I GGNCC 3 cut(s) 4, 730, 936
ScrFI CCNGG 4 cut(s) 346, 564, 754, 780
SduI GDGCHC 2 cut(s) 108, 576
SetI ASST 9 cut(s) 53, 83, 260, 284, 446, 565, 735, 906, 987
SfaNI GCATC 4 cut(s) 160, 733, 755, 835
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 3 cut(s) 4, 730, 936
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 5 cut(s) 10, 121, 302, 715, 837
SsiI CCGC 3 cut(s) 73, 523, 896
StyD4I CCNGG 4 cut(s) 344, 562, 752, 778
TaaI ACNGT 6 cut(s) 25, 44, 59, 185, 802, 932
TaqI TCGA 1 cut(s) 927
TasI AATT 5 cut(s) 10, 121, 302, 715, 837
TfiI GAWTC 3 cut(s) 315, 515, 976
Tru1I TTAA 3 cut(s) 810, 1016, 1033
Tru9I TTAA 3 cut(s) 810, 1016, 1033
TscAI CASTG 1 cut(s) 937
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 191, 215, 380, 422, 701, 807
TspRI CASTG 1 cut(s) 937
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 4, 730, 936
XapI RAATTY 1 cut(s) 837
XceI RCATGY 1 cut(s) 919
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.