Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009377.1

Orthogroup ID

OG0007332

Physical Location & Seq

Genomic Coordinates Forward (+)

2771 .. 9787

Gene Structure 7017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009377.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgtcaagagaccgcctcgtaaagagcgtcaagaagtttgctgatgtccaatacaagctcttcacagctcgctatggtcagcagctcatcgacattttcgagttccccgtaaagcttgtgctctctcctttcactatcgccattgacgttgccggctccgcccaacgtggctttggcgtgcccgagttgatttccaagctctcttacgcctcaatatttgtagtagctactctagggacttatgacatagcgctagagatgggaaagaaggtgatatgccagaggaactgtgaaacctgcaacggttggcaggcattgcgatgtaccttgtgcaaaggatcagggagggtgcactaccaagtgaaaaattacacattgaaaaggtacgcttatcttcaatttacatcttatttctccaatgaatactcatgcagtggggagagggaaacggctgaatgtgttgcagatgctattgctgacagtcgtgctgagttggttcatcttccatctgccataaatcttcatacaccattgccgtctaaagactgcctgacctgtgatggcacgggtgtaatgagctgtcctgagtgcaaaaacaaattacaagtcagaatctctgcagatgatataatggagcctccctggaaagcctacaatgttatgaagaagatggactacccttatgagcatatagttgacagcatgaaagatcccagcattgctgcattttggctatttaccttgcctcgggttgtgggtggttacgactatgatgatgatgtcaaacaaaaactttggtggcaatacaaggaatctatgcggtatgatcaacttcgtgatgtggtggccaagcgaaaacctggctgggagcacttgcaggaagccttgatctccatagatcctgctcgtgcaagggatgatcctgttattgtaaaaaatatccctttctataaagcgaagaaggcacttgaagcagaagtcatgaaactaaatcctccagcaaggccacaaaattggggagaactggaccttccattggatgcatcttcctggagcaaggaggatctcaaagatcctggaaagttttatgaaatgaccgttcttcttaatgctcagcgagaaatcgctgacaaaattttggatgcacaatgggagactaaatggcgtcaagaaaagttgaatgagatgttggcggagaaggtacggccatacatgcagaagatcgacagtgggaccctctctcagcctattatactaccaccacaagaacagaatcagaagaggagccgacaacggagatggtggttcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

437

Amino Acids

50.45

Weight (kDa)

8.57

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53860 AT5G53860 AT5G53860 AT5G53860 AT5G53860
fragaria_vesca	FvH4_3g19780
malus_domestica	MD03G1229200.v1.1 MD11G1250000.v1.1
prunus_persica	Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1 Prupe.4G179900_v2.0.a1
pyrus_communis	pycom03g17700 pycom11g22120
rosa_chinensis	RchiOBHm_Chr5g0033181
rosa_laevigata	RLG00000033454
rosa_multiflora	Rmu_sc0009377.1_g000002 Rmu_ssc0000299.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046800
rosa_rugosa	Rorug05G0137300
rosa_samantha	Rh5AG229100 Rh5BG230200 Rh5CG258100 Rh5DG234900
rosa_wichuraiana	Rw5G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AciI	CCGC	4 cut(s)	13, 159, 820, 1193
AclWI	GGATC	6 cut(s)	346, 704, 893, 914, 1067, 1071
AcoI	YGGCCR	2 cut(s)	846, 1205
AcsI	RAATTY	1 cut(s)	1134
AcyI	GRCGYC	1 cut(s)	1165
AfaI	GTAC	3 cut(s)	325, 386, 1203
AfeI	AGCGCT	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	747, 1036
AgsI	TTSAA	4 cut(s)	379, 398, 971, 1180
AjnI	CCWGG	4 cut(s)	641, 859, 1049, 1075
AjuI	GAANNNNNNNTTGG	2 cut(s)	1172, 1204
AluBI	AGCT	7 cut(s)	58, 68, 85, 115, 199, 227, 579
AluI	AGCT	7 cut(s)	58, 68, 85, 115, 199, 227, 579
Alw21I	GWGCWC	3 cut(s)	123, 354, 873
Alw26I	GTCTC	2 cut(s)	3, 1148
Alw44I	GTGCAC	1 cut(s)	350
AlwI	GGATC	6 cut(s)	346, 704, 893, 914, 1067, 1071
Ama87I	CYCGRG	2 cut(s)	182, 747
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	3 cut(s)	846, 1004, 1205
ApaLI	GTGCAC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	82, 722
ApoI	RAATTY	1 cut(s)	1134
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	1027, 1233
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	2 cut(s)	182, 747
AvaII	GGWCC	2 cut(s)	1027, 1233
BaeGI	GKGCMC	2 cut(s)	183, 354
BalI	TGGCCA	1 cut(s)	848
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BauI	CACGAG	1 cut(s)	906
Bbv12I	GWGCWC	3 cut(s)	123, 354, 873
BbvI	GCAGC	2 cut(s)	94, 709
BccI	CCATC	5 cut(s)	253, 514, 554, 664, 1293
BceAI	ACGGC	3 cut(s)	465, 520, 1220
BciT130I	CCWGG	4 cut(s)	643, 861, 1051, 1077
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	3, 1148
BfaI	CTAG	2 cut(s)	233, 254
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	83, 723
BlpI	GCTNAGC	1 cut(s)	1113
BlsI	GCNGC	2 cut(s)	84, 724
Bme1390I	CCNGG	4 cut(s)	643, 861, 1051, 1077
Bme18I	GGWCC	2 cut(s)	1027, 1233
BmeT110I	CYCGRG	2 cut(s)	182, 747
BmgT120I	GGNCC	2 cut(s)	1027, 1233
BmiI	GGNNCC	5 cut(s)	157, 636, 1234, 1235, 1286
BmrFI	CCNGG	4 cut(s)	643, 861, 1051, 1077
BmsI	GCATC	4 cut(s)	457, 1030, 1052, 1132
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	981, 1072
Bpu1102I	GCTNAGC	1 cut(s)	1113
BsaHI	GRCGYC	1 cut(s)	1165
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	2 cut(s)	641, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	747, 1036
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	1029
Bse3DI	GCAATG	3 cut(s)	314, 530, 717
BseBI	CCWGG	4 cut(s)	643, 861, 1051, 1077
BseDI	CCNNGG	2 cut(s)	641, 746
BseGI	GGATG	3 cut(s)	922, 1045, 1147
BseLI	CCNNNNNNNGG	2 cut(s)	747, 1036
BseMI	GCAATG	3 cut(s)	314, 530, 717
BseMII	CTCAG	4 cut(s)	480, 576, 1127, 1256
BseNI	ACTGG	1 cut(s)	1029
BseRI	GAGGAG	1 cut(s)	1297
BseSI	GKGCMC	2 cut(s)	183, 354
BseXI	GCAGC	2 cut(s)	94, 709
BseYI	CCCAGC	2 cut(s)	713, 864
BshFI	GGCC	3 cut(s)	848, 1006, 1207
BsiHKAI	GWGCWC	3 cut(s)	123, 354, 873
BsiHKCI	CYCGRG	2 cut(s)	182, 747
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	250, 1246
BslI	CCNNNNNNNGG	2 cut(s)	747, 1036
BsmAI	GTCTC	2 cut(s)	3, 1148
BsmFI	GGGAC	2 cut(s)	250, 1246
BsnI	GGCC	3 cut(s)	848, 1006, 1207
Bso31I	GGTCTC	1 cut(s)	3
BsoBI	CYCGRG	2 cut(s)	182, 747
Bsp1286I	GDGCHC	4 cut(s)	123, 183, 354, 873
Bsp143I	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
Bsp1720I	GCTNAGC	1 cut(s)	1113
BspACI	CCGC	4 cut(s)	13, 159, 820, 1193
BspANI	GGCC	3 cut(s)	848, 1006, 1207
BspCNI	CTCAG	4 cut(s)	481, 577, 1126, 1255
BspHI	TCATGA	1 cut(s)	981
BspLI	GGNNCC	5 cut(s)	157, 636, 1234, 1235, 1286
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	6 cut(s)	346, 704, 893, 914, 1067, 1071
BspQI	GCTCTTC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	3
BsrDI	GCAATG	3 cut(s)	314, 530, 717
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	1029
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	641, 746
BssMI	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
BssNI	GRCGYC	1 cut(s)	1165
BssSI	CACGAG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	4 cut(s)	643, 861, 1051, 1077
Bst4CI	ACNGT	5 cut(s)	290, 305, 482, 1099, 1229
Bst6I	CTCTTC	2 cut(s)	65, 1274
BstACI	GRCGYC	1 cut(s)	1165
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstC8I	GCNNGC	4 cut(s)	70, 154, 179, 312
BstDEI	CTNAG	4 cut(s)	489, 585, 1113, 1242
BstF5I	GGATG	3 cut(s)	922, 1045, 1147
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	9 cut(s)	341, 712, 829, 891, 901, 922, 1066, 1075, 1224
BstMAI	GTCTC	2 cut(s)	3, 1148
BstMBI	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 316, 962, 971, 1213
BstNI	CCWGG	4 cut(s)	643, 861, 1051, 1077
BstNSI	RCATGY	1 cut(s)	1216
BstSCI	CCNGG	4 cut(s)	641, 859, 1049, 1075
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	2 cut(s)	183, 354
BstV1I	GCAGC	2 cut(s)	94, 709
BstX2I	RGATCY	4 cut(s)	709, 898, 1063, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	1014
BstYI	RGATCY	4 cut(s)	709, 898, 1063, 1072
BsuRI	GGCC	3 cut(s)	848, 1006, 1207
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	922, 1045, 1147
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	439, 1234
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	4 cut(s)	70, 154, 179, 312
CciI	TCATGA	1 cut(s)	981
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	1027, 1233
CseI	GACGC	2 cut(s)	16, 1154
Csp6I	GTAC	3 cut(s)	324, 385, 1202
CviAII	CATG	4 cut(s)	429, 703, 982, 1213
CviQI	GTAC	3 cut(s)	324, 385, 1202
DdeI	CTNAG	4 cut(s)	489, 585, 1113, 1242
DpnI	GATC	9 cut(s)	340, 711, 828, 890, 900, 921, 1065, 1074, 1223
DpnII	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
EaeI	YGGCCR	2 cut(s)	846, 1205
Eam1104I	CTCTTC	2 cut(s)	65, 1274
EarI	CTCTTC	2 cut(s)	65, 1274
EciI	GGCGGA	2 cut(s)	148, 1208
Eco31I	GGTCTC	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	1027, 1233
Eco47III	AGCGCT	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	182, 747
EcoO109I	RGGNCCY	1 cut(s)	1233
EcoRII	CCWGG	4 cut(s)	641, 859, 1049, 1075
EcoT22I	ATGCAT	1 cut(s)	1045
FaeI	CATG	4 cut(s)	432, 706, 985, 1216
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	2 cut(s)	250, 1246
FatI	CATG	4 cut(s)	428, 702, 981, 1212
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	2 cut(s)	83, 723
FokI	GGATG	3 cut(s)	929, 1052, 1154
Fsp4HI	GCNGC	2 cut(s)	83, 723
FspBI	CTAG	2 cut(s)	233, 254
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	83, 723
GsaI	CCCAGC	2 cut(s)	717, 868
GsuI	CTGGAG	2 cut(s)	981, 1072
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	848, 1006, 1207
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	2 cut(s)	16, 1154
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	1165
Hin1II	CATG	4 cut(s)	432, 706, 985, 1216
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	612, 812, 1273
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	2 cut(s)	352, 697
Hpy188I	TCNGA	2 cut(s)	611, 1278
Hpy188III	TCNNGA	6 cut(s)	6, 31, 584, 836, 982, 1169
Hpy8I	GTNNAC	2 cut(s)	352, 697
HpyAV	CCTTC	4 cut(s)	262, 955, 1040, 1192
HpyCH4III	ACNGT	5 cut(s)	290, 305, 482, 1099, 1229
HpyCH4IV	ACGT	2 cut(s)	147, 166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 316, 962, 971, 1213
HpyF3I	CTNAG	4 cut(s)	489, 585, 1113, 1242
HpySE526I	ACGT	2 cut(s)	147, 166
Hsp92I	GRCGYC	1 cut(s)	1165
Hsp92II	CATG	4 cut(s)	432, 706, 985, 1216
HspAI	GCGC	1 cut(s)	251
KflI	GGGWCCC	1 cut(s)	1233
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	5 cut(s)	161, 634, 868, 1053, 1284
Lsp1109I	GCAGC	2 cut(s)	94, 709
LweI	GCATC	4 cut(s)	457, 1030, 1052, 1132
MaeI	CTAG	2 cut(s)	233, 254
MaeII	ACGT	2 cut(s)	147, 166
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	9 cut(s)	340, 711, 828, 890, 900, 921, 1065, 1074, 1223
MboI	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
MflI	RGATCY	4 cut(s)	709, 898, 1063, 1072
MhlI	GDGCHC	4 cut(s)	123, 183, 354, 873
MlsI	TGGCCA	1 cut(s)	848
MluCI	AATT	5 cut(s)	367, 398, 599, 1012, 1134
MluNI	TGGCCA	1 cut(s)	848
Mox20I	TGGCCA	1 cut(s)	848
Mph1103I	ATGCAT	1 cut(s)	1045
MroNI	GCCGGC	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	2 cut(s)	1107, 1312
MslI	CAYNNNNRTG	1 cut(s)	319
Msp20I	TGGCCA	1 cut(s)	848
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	4 cut(s)	643, 861, 1051, 1077
MvaI	CCWGG	4 cut(s)	643, 861, 1051, 1077
MwoI	GCNNNNNNNGC	5 cut(s)	158, 316, 962, 971, 1213
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	432, 706, 985, 1216
NlaIV	GGNNCC	5 cut(s)	157, 636, 1234, 1235, 1286
NsiI	ATGCAT	1 cut(s)	1045
NspI	RCATGY	1 cut(s)	1216
PagI	TCATGA	1 cut(s)	981
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	4 cut(s)	24, 96, 105, 144
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	612, 812, 1273
PfoI	TCCNGGA	2 cut(s)	1049, 1075
PkrI	GCNGC	2 cut(s)	84, 724
PpuMI	RGGWCCY	1 cut(s)	1233
Psp5II	RGGWCCY	1 cut(s)	1233
Psp6I	CCWGG	4 cut(s)	641, 859, 1049, 1075
PspFI	CCCAGC	2 cut(s)	713, 864
PspGI	CCWGG	4 cut(s)	641, 859, 1049, 1075
PspN4I	GGNNCC	5 cut(s)	157, 636, 1234, 1235, 1286
PspPI	GGNCC	2 cut(s)	1027, 1233
PspPPI	RGGWCCY	1 cut(s)	1233
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	4 cut(s)	709, 898, 1063, 1072
RsaI	GTAC	3 cut(s)	325, 386, 1203
RsaNI	GTAC	3 cut(s)	324, 385, 1202
RseI	CAYNNNNRTG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	1107, 1312
SatI	GCNGC	2 cut(s)	83, 723
Sau3AI	GATC	9 cut(s)	338, 709, 826, 888, 898, 919, 1063, 1072, 1221
Sau96I	GGNCC	2 cut(s)	1027, 1233
ScrFI	CCNGG	4 cut(s)	643, 861, 1051, 1077
SduI	GDGCHC	4 cut(s)	123, 183, 354, 873
SfaNI	GCATC	4 cut(s)	457, 1030, 1052, 1132
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	2 cut(s)	1027, 1233
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	5 cut(s)	367, 398, 599, 1012, 1134
SsiI	CCGC	4 cut(s)	13, 159, 820, 1193
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	2 cut(s)	233, 254
StyD4I	CCNGG	4 cut(s)	641, 859, 1049, 1075
TaaI	ACNGT	5 cut(s)	290, 305, 482, 1099, 1229
TaiI	ACGT	2 cut(s)	150, 169
TaqI	TCGA	3 cut(s)	90, 99, 1224
TasI	AATT	5 cut(s)	367, 398, 599, 1012, 1134
TfiI	GAWTC	3 cut(s)	612, 812, 1273
Tru1I	TTAA	2 cut(s)	1107, 1312
Tru9I	TTAA	2 cut(s)	1107, 1312
TscAI	CASTG	2 cut(s)	439, 1234
TseI	GCWGC	2 cut(s)	82, 722
TspDTI	ATGAA	7 cut(s)	435, 488, 512, 677, 719, 998, 1104
TspGWI	ACGGA	1 cut(s)	1309
TspRI	CASTG	2 cut(s)	439, 1234
VneI	GTGCAC	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	1027, 1233
XapI	RAATTY	1 cut(s)	1134
XceI	RCATGY	1 cut(s)	1216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	233, 254
Zsp2I	ATGCAT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.