Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002516

Physical Location & Seq

Genomic Coordinates Forward (+)

12384854 .. 12388821

Gene Structure 3968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGATTGGGTTGGGGTCTGGTATAGCTTCTGGTATGGCCATGCAGTATATAGGTCTGCAACTTGGAGCAGGTGCTTTAAAGGATATAGTGGGGATACCGACGTCTGTAGCATCTGCAAGTGAGGCAGCAAAGGCAGGAATTCCATTGGGTCACTATGAGGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAAGGACACTTATTGCTGTCATTGGGAGAACAAGATCTCAGGGTGAGGAGTCAATCATCCAAGAGAAGACTATATTAAACGCAGCCAATAAAGTTGTCTTCATAGTCAGAGAAAACCAGTATAAATGTGGTATGGATGGTTCTATTCCAGTTTTGGTGAATCCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTGTTTTTAGGTGATGCAGAGGTATGGAGGAGACCCTCAGTTGGGCTGGCAGGGCCTCATGGTGGTCCGTTCCCTCTAGTCACCAGAGAAGGCCATAACGTTATTGATGTCATATTTACATCTCCAATTCTAAGCCTTGCTGAAGTATCAATGAGCCTTGATAATATTGACGGAGTCATAGAGCATGGAATCATTTCCAAGTTCCCATGCACTGCAGTAATTGCTTCGGAAAGTGGGCCGTCTGTTGTTGATAATGTGCCAAAGAATTCAGTAAAGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

231

Amino Acids

24.44

Weight (kDa)

4.48

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	31 - 216	4.8e-36	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03760
fragaria_vesca	FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750
malus_domestica	MD09G1244900.v1.1
prunus_persica	Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1
pyrus_communis	pycom09g16290
rosa_chinensis	RchiOBHm_Chr4g0410421 RchiOBHm_Chr7g0225641
rosa_laevigata	RLG00000001798 RLG00000033455
rosa_multiflora	Rmu_sc0003876.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046790 Rroxscaffold_3G00233610 Rroxscaffold_3G00255650 Rroxscaffold_4G00302570
rosa_rugosa	Rorug05G0137300 Rorug07G0232100 Rorug07G0232100
rosa_samantha	Rh4AG006500 Rh4AG160600 Rh4CG172700 Rh7AG371600 Rh7BG366100 Rh7CG390300 Rh7DG377000
rosa_wichuraiana	Rw7G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	62
AatII	GACGTC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	62
AclI	AACGTT	1 cut(s)	510
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	141, 676
AcuI	CTGAAG	2 cut(s)	417, 573
AcyI	GRCGYC	1 cut(s)	104
AfiI	CCNNNNNNNGG	3 cut(s)	452, 453, 473
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	436
AoxI	GGCC	4 cut(s)	39, 464, 502, 647
ApeKI	GCWGC	2 cut(s)	128, 293
ApoI	RAATTY	2 cut(s)	141, 676
Asp700I	GAANNNNTTC	1 cut(s)	604
AspS9I	GGNCC	3 cut(s)	464, 476, 647
AsuHPI	GGTGA	5 cut(s)	16, 266, 379, 434, 484
AvaII	GGWCC	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BalI	TGGCCA	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	284, 301
BbvI	GCAGC	2 cut(s)	140, 305
BccI	CCATC	2 cut(s)	341, 379
BceAI	ACGGC	1 cut(s)	634
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	2 cut(s)	108, 624
BfuAI	ACCTGC	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	2 cut(s)	129, 294
BlsI	GCNGC	2 cut(s)	130, 295
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	3 cut(s)	464, 476, 647
BmiI	GGNNCC	1 cut(s)	690
BmsI	GCATC	3 cut(s)	122, 184, 415
BpiI	GAAGAC	2 cut(s)	284, 301
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	3 cut(s)	452, 453, 473
Bse1I	ACTGG	3 cut(s)	328, 359, 386
BseGI	GGATG	3 cut(s)	267, 352, 390
BseLI	CCNNNNNNNGG	3 cut(s)	452, 453, 473
BseMII	CTCAG	2 cut(s)	263, 462
BseNI	ACTGG	3 cut(s)	328, 359, 386
BseRI	GAGGAG	2 cut(s)	272, 454
BseXI	GCAGC	2 cut(s)	140, 305
BshFI	GGCC	4 cut(s)	41, 466, 504, 649
BslI	CCNNNNNNNGG	3 cut(s)	452, 453, 473
BsmAI	GTCTC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	41, 466, 504, 649
Bso31I	GGTCTC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	245
BspANI	GGCC	4 cut(s)	41, 466, 504, 649
BspCNI	CTCAG	2 cut(s)	262, 461
BspLI	GGNNCC	1 cut(s)	690
BspMAI	CTGCAG	1 cut(s)	628
BspMI	ACCTGC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	328, 359, 386
BssMI	GATC	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	249, 448, 542
BstF5I	GGATG	3 cut(s)	267, 352, 390
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 463, 632
BstSFI	CTRYAG	2 cut(s)	108, 624
BstV1I	GCAGC	2 cut(s)	140, 305
BstV2I	GAAGAC	2 cut(s)	284, 301
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	41, 466, 504, 649
BtsCI	GGATG	3 cut(s)	267, 352, 390
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	464, 476, 647
CviAII	CATG	4 cut(s)	43, 470, 596, 618
CviJI	RGCY	9 cut(s)	29, 41, 296, 457, 466, 504, 546, 567, 649
CviKI_1	RGCY	9 cut(s)	29, 41, 296, 457, 466, 504, 546, 567, 649
DdeI	CTNAG	3 cut(s)	249, 448, 542
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	417, 573
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	2 cut(s)	141, 676
FaeI	CATG	4 cut(s)	46, 473, 599, 621
FatI	CATG	4 cut(s)	42, 469, 595, 617
Fnu4HI	GCNGC	2 cut(s)	129, 294
FokI	GGATG	3 cut(s)	254, 359, 397
Fsp4HI	GCNGC	2 cut(s)	129, 294
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	2 cut(s)	129, 294
HaeIII	GGCC	4 cut(s)	41, 466, 504, 649
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	46, 473, 599, 621
HinfI	GANTC	4 cut(s)	260, 370, 585, 600
HphI	GGTGA	5 cut(s)	16, 266, 379, 434, 484
Hpy188I	TCNGA	2 cut(s)	320, 640
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	494
HpyCH4IV	ACGT	2 cut(s)	104, 510
HpyCH4V	TGCA	7 cut(s)	46, 61, 119, 185, 428, 621, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 463, 632
HpyF3I	CTNAG	3 cut(s)	249, 448, 542
HpySE526I	ACGT	2 cut(s)	104, 510
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	46, 473, 599, 621
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	140, 305
LweI	GCATC	3 cut(s)	122, 184, 415
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	2 cut(s)	104, 510
MaeIII	GTNAC	2 cut(s)	152, 490
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	4 cut(s)	221, 289, 301, 410
MflI	RGATCY	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	5 cut(s)	141, 174, 537, 630, 676
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	269, 594
MnlI	CCTC	9 cut(s)	118, 154, 250, 384, 424, 432, 457, 477, 495
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	3 cut(s)	80, 287, 694
Msp20I	TGGCCA	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 463, 632
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	4 cut(s)	46, 473, 599, 621
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	152, 490
PaqCI	CACCTGC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	370, 600
PflFI	GACNNNGTC	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	130, 295
PleI	GAGTC	2 cut(s)	268, 593
PpsI	GAGTC	2 cut(s)	268, 593
Psp1406I	AACGTT	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	3 cut(s)	464, 476, 647
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	80, 287, 694
SatI	GCNGC	2 cut(s)	129, 294
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	3 cut(s)	464, 476, 647
SchI	GAGTC	2 cut(s)	269, 594
SetI	ASST	9 cut(s)	31, 58, 76, 107, 414, 424, 435, 513, 694
SfaNI	GCATC	3 cut(s)	122, 184, 415
SfcI	CTRYAG	2 cut(s)	108, 624
SinI	GGWCC	1 cut(s)	476
Sse9I	AATT	5 cut(s)	141, 174, 537, 630, 676
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	1 cut(s)	488
TaiI	ACGT	2 cut(s)	107, 513
TasI	AATT	5 cut(s)	141, 174, 537, 630, 676
TfiI	GAWTC	2 cut(s)	370, 600
Tru1I	TTAA	3 cut(s)	80, 287, 694
Tru9I	TTAA	3 cut(s)	80, 287, 694
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	152, 490
TseI	GCWGC	2 cut(s)	128, 293
Tsp45I	GTSAC	2 cut(s)	152, 490
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	2 cut(s)	468, 597
TspRI	CASTG	1 cut(s)	628
Tth111I	GACNNNGTC	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	141, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	1 cut(s)	488
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.