histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 405 |
| AccI | GTMKAC | 1 cut(s) | 952 |
| AccII | CGCG | 2 cut(s) | 40, 423 |
| AciI | CCGC | 3 cut(s) | 423, 533, 642 |
| AclWI | GGATC | 3 cut(s) | 970, 1077, 1090 |
| AcoI | YGGCCR | 1 cut(s) | 1038 |
| AcyI | GRCGYC | 2 cut(s) | 406, 1321 |
| AfaI | GTAC | 3 cut(s) | 180, 988, 1095 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 697 |
| AgsI | TTSAA | 8 cut(s) | 46, 118, 447, 550, 602, 633, 1209, 1270 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 67 |
| AjnI | CCWGG | 1 cut(s) | 809 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 613, 645 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 291, 323 |
| AluBI | AGCT | 4 cut(s) | 683, 688, 908, 1246 |
| AluI | AGCT | 4 cut(s) | 683, 688, 908, 1246 |
| Alw21I | GWGCWC | 2 cut(s) | 690, 1309 |
| Alw26I | GTCTC | 8 cut(s) | 57, 294, 517, 666, 826, 991, 1052, 1217 |
| Alw44I | GTGCAC | 1 cut(s) | 1305 |
| AlwI | GGATC | 3 cut(s) | 970, 1077, 1090 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| AoxI | GGCC | 2 cut(s) | 1038, 1112 |
| ApaLI | GTGCAC | 1 cut(s) | 1305 |
| ApeKI | GCWGC | 1 cut(s) | 530 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 343, 375 |
| AspLEI | GCGC | 3 cut(s) | 40, 408, 423 |
| AspS9I | GGNCC | 2 cut(s) | 61, 155 |
| AvaII | GGWCC | 2 cut(s) | 61, 155 |
| AxyI | CCTNAGG | 1 cut(s) | 159 |
| BaeGI | GKGCMC | 1 cut(s) | 1309 |
| BalI | TGGCCA | 1 cut(s) | 1040 |
| BamHI | GGATCC | 1 cut(s) | 1082 |
| BanI | GGYRCC | 1 cut(s) | 405 |
| BanII | GRGCYC | 1 cut(s) | 690 |
| BauI | CACGAG | 1 cut(s) | 666 |
| BbsI | GAAGAC | 1 cut(s) | 726 |
| Bbv12I | GWGCWC | 2 cut(s) | 690, 1309 |
| BbvI | GCAGC | 1 cut(s) | 517 |
| BccI | CCATC | 4 cut(s) | 311, 377, 644, 1067 |
| BceAI | ACGGC | 1 cut(s) | 323 |
| BciT130I | CCWGG | 1 cut(s) | 811 |
| BcoDI | GTCTC | 8 cut(s) | 57, 294, 517, 666, 826, 991, 1052, 1217 |
| BfoI | RGCGCY | 1 cut(s) | 409 |
| BisI | GCNGC | 1 cut(s) | 531 |
| BlpI | GCTNAGC | 1 cut(s) | 684 |
| BlsI | GCNGC | 1 cut(s) | 532 |
| Bme1390I | CCNGG | 1 cut(s) | 811 |
| Bme18I | GGWCC | 2 cut(s) | 61, 155 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 61, 155 |
| BmiI | GGNNCC | 4 cut(s) | 62, 156, 407, 1084 |
| BmrFI | CCNGG | 1 cut(s) | 811 |
| BmrI | ACTGGG | 2 cut(s) | 33, 472 |
| BmsI | GCATC | 2 cut(s) | 653, 847 |
| BmuI | ACTGGG | 2 cut(s) | 33, 472 |
| BpiI | GAAGAC | 1 cut(s) | 726 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 672, 704, 1214, 1246 |
| BpmI | CTGGAG | 1 cut(s) | 894 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1216 |
| Bsa29I | ATCGAT | 1 cut(s) | 792 |
| BsaHI | GRCGYC | 2 cut(s) | 406, 1321 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| BsaJI | CCNNGG | 5 cut(s) | 150, 676, 810, 886, 1086 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 291, 321, 955, 985, 1269, 1299 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 697 |
| Bse1I | ACTGG | 3 cut(s) | 28, 467, 755 |
| Bse21I | CCTNAGG | 1 cut(s) | 159 |
| Bse3DI | GCAATG | 1 cut(s) | 828 |
| BseBI | CCWGG | 1 cut(s) | 811 |
| BseCI | ATCGAT | 1 cut(s) | 792 |
| BseDI | CCNNGG | 5 cut(s) | 150, 676, 810, 886, 1086 |
| BseGI | GGATG | 2 cut(s) | 33, 796 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 697 |
| BseMI | GCAATG | 1 cut(s) | 828 |
| BseMII | CTCAG | 3 cut(s) | 150, 675, 933 |
| BseNI | ACTGG | 3 cut(s) | 28, 467, 755 |
| BseRI | GAGGAG | 3 cut(s) | 249, 402, 1235 |
| BseSI | GKGCMC | 1 cut(s) | 1309 |
| BseXI | GCAGC | 1 cut(s) | 517 |
| BsgI | GTGCAG | 1 cut(s) | 627 |
| Bsh1236I | CGCG | 2 cut(s) | 40, 423 |
| BshFI | GGCC | 2 cut(s) | 1040, 1114 |
| BshNI | GGYRCC | 1 cut(s) | 405 |
| BshVI | ATCGAT | 1 cut(s) | 792 |
| BsiHKAI | GWGCWC | 2 cut(s) | 690, 1309 |
| BslFI | GGGAC | 2 cut(s) | 74, 219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 697 |
| BsmAI | GTCTC | 8 cut(s) | 57, 294, 517, 666, 826, 991, 1052, 1217 |
| BsmFI | GGGAC | 2 cut(s) | 74, 219 |
| BsnI | GGCC | 2 cut(s) | 1040, 1114 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| Bsp1286I | GDGCHC | 2 cut(s) | 690, 1309 |
| Bsp143I | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 684 |
| Bsp19I | CCATGG | 2 cut(s) | 886, 1086 |
| BspACI | CCGC | 3 cut(s) | 423, 533, 642 |
| BspANI | GGCC | 2 cut(s) | 1040, 1114 |
| BspCNI | CTCAG | 3 cut(s) | 151, 676, 934 |
| BspDI | ATCGAT | 1 cut(s) | 792 |
| BspFNI | CGCG | 2 cut(s) | 40, 423 |
| BspHI | TCATGA | 1 cut(s) | 541 |
| BspLI | GGNNCC | 4 cut(s) | 62, 156, 407, 1084 |
| BspPI | GGATC | 3 cut(s) | 970, 1077, 1090 |
| BspT107I | GGYRCC | 1 cut(s) | 405 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrDI | GCAATG | 1 cut(s) | 828 |
| BsrI | ACTGG | 3 cut(s) | 28, 467, 755 |
| BssECI | CCNNGG | 5 cut(s) | 150, 676, 810, 886, 1086 |
| BssMI | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| BssNI | GRCGYC | 2 cut(s) | 406, 1321 |
| BssSI | CACGAG | 1 cut(s) | 666 |
| BssT1I | CCWWGG | 4 cut(s) | 150, 676, 886, 1086 |
| Bst2BI | CACGAG | 1 cut(s) | 666 |
| Bst2UI | CCWGG | 1 cut(s) | 811 |
| Bst4CI | ACNGT | 4 cut(s) | 256, 743, 928, 1046 |
| Bst6I | CTCTTC | 1 cut(s) | 226 |
| BstACI | GRCGYC | 2 cut(s) | 406, 1321 |
| BstDEI | CTNAG | 3 cut(s) | 159, 684, 942 |
| BstDSI | CCRYGG | 2 cut(s) | 886, 1086 |
| BstF5I | GGATG | 2 cut(s) | 33, 796 |
| BstFNI | CGCG | 2 cut(s) | 40, 423 |
| BstH2I | RGCGCY | 1 cut(s) | 409 |
| BstHHI | GCGC | 3 cut(s) | 40, 408, 423 |
| BstKTI | GATC | 5 cut(s) | 91, 792, 796, 978, 1085 |
| BstMAI | GTCTC | 8 cut(s) | 57, 294, 517, 666, 826, 991, 1052, 1217 |
| BstMBI | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 662 |
| BstNI | CCWGG | 1 cut(s) | 811 |
| BstNSI | RCATGY | 1 cut(s) | 1286 |
| BstSCI | CCNGG | 1 cut(s) | 809 |
| BstSLI | GKGCMC | 1 cut(s) | 1309 |
| BstUI | CGCG | 2 cut(s) | 40, 423 |
| BstV1I | GCAGC | 1 cut(s) | 517 |
| BstV2I | GAAGAC | 1 cut(s) | 726 |
| BstX2I | RGATCY | 1 cut(s) | 1082 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 142, 1036 |
| BstYI | RGATCY | 1 cut(s) | 1082 |
| Bsu15I | ATCGAT | 1 cut(s) | 792 |
| Bsu36I | CCTNAGG | 1 cut(s) | 159 |
| BsuRI | GGCC | 2 cut(s) | 1040, 1114 |
| BsuTUI | ATCGAT | 1 cut(s) | 792 |
| BtgI | CCRYGG | 2 cut(s) | 886, 1086 |
| BtsCI | GGATG | 2 cut(s) | 33, 796 |
| BtsI | GCAGTG | 1 cut(s) | 846 |
| BtsIMutI | CAGTG | 1 cut(s) | 846 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| CciI | TCATGA | 1 cut(s) | 541 |
| CfoI | GCGC | 3 cut(s) | 40, 408, 423 |
| Cfr13I | GGNCC | 2 cut(s) | 61, 155 |
| ClaI | ATCGAT | 1 cut(s) | 792 |
| CseI | GACGC | 1 cut(s) | 1310 |
| Csp6I | GTAC | 3 cut(s) | 179, 987, 1094 |
| CviQI | GTAC | 3 cut(s) | 179, 987, 1094 |
| DdeI | CTNAG | 3 cut(s) | 159, 684, 942 |
| DinI | GGCGCC | 1 cut(s) | 407 |
| DpnI | GATC | 5 cut(s) | 90, 791, 795, 977, 1084 |
| DpnII | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| DraI | TTTAAA | 1 cut(s) | 414 |
| DriI | GACNNNNNGTC | 1 cut(s) | 67 |
| EaeI | YGGCCR | 1 cut(s) | 1038 |
| Eam1104I | CTCTTC | 1 cut(s) | 226 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 67 |
| EarI | CTCTTC | 1 cut(s) | 226 |
| Ecl136II | GAGCTC | 1 cut(s) | 688 |
| Eco130I | CCWWGG | 4 cut(s) | 150, 676, 886, 1086 |
| Eco24I | GRGCYC | 1 cut(s) | 690 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| Eco32I | GATATC | 1 cut(s) | 472 |
| Eco47I | GGWCC | 2 cut(s) | 61, 155 |
| Eco53kI | GAGCTC | 1 cut(s) | 688 |
| Eco81I | CCTNAGG | 1 cut(s) | 159 |
| EcoICRI | GAGCTC | 1 cut(s) | 688 |
| EcoO109I | RGGNCCY | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 809 |
| EcoRV | GATATC | 1 cut(s) | 472 |
| EcoT14I | CCWWGG | 4 cut(s) | 150, 676, 886, 1086 |
| EcoT22I | ATGCAT | 1 cut(s) | 924 |
| EcoT38I | GRGCYC | 1 cut(s) | 690 |
| EgeI | GGCGCC | 1 cut(s) | 407 |
| EheI | GGCGCC | 1 cut(s) | 407 |
| ErhI | CCWWGG | 4 cut(s) | 150, 676, 886, 1086 |
| FaqI | GGGAC | 2 cut(s) | 74, 219 |
| FauNDI | CATATG | 1 cut(s) | 1002 |
| FblI | GTMKAC | 1 cut(s) | 952 |
| Fnu4HI | GCNGC | 1 cut(s) | 531 |
| FokI | GGATG | 2 cut(s) | 40, 783 |
| FriOI | GRGCYC | 1 cut(s) | 690 |
| Fsp4HI | GCNGC | 1 cut(s) | 531 |
| GlaI | GCGC | 3 cut(s) | 39, 407, 422 |
| GluI | GCNGC | 1 cut(s) | 531 |
| GsuI | CTGGAG | 1 cut(s) | 894 |
| HaeII | RGCGCY | 1 cut(s) | 409 |
| HaeIII | GGCC | 2 cut(s) | 1040, 1114 |
| HgaI | GACGC | 1 cut(s) | 1310 |
| HhaI | GCGC | 3 cut(s) | 40, 408, 423 |
| Hin1I | GRCGYC | 2 cut(s) | 406, 1321 |
| Hin6I | GCGC | 3 cut(s) | 38, 406, 421 |
| HinP1I | GCGC | 3 cut(s) | 38, 406, 421 |
| HinfI | GANTC | 4 cut(s) | 611, 944, 1214, 1328 |
| Hpy166II | GTNNAC | 4 cut(s) | 265, 487, 953, 1307 |
| Hpy188I | TCNGA | 4 cut(s) | 649, 826, 975, 1219 |
| Hpy188III | TCNNGA | 5 cut(s) | 158, 542, 873, 1233, 1325 |
| Hpy8I | GTNNAC | 4 cut(s) | 265, 487, 953, 1307 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 4 cut(s) | 453, 726, 842, 1144 |
| HpyCH4III | ACNGT | 4 cut(s) | 256, 743, 928, 1046 |
| HpyCH4IV | ACGT | 1 cut(s) | 68 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 662 |
| HpyF3I | CTNAG | 3 cut(s) | 159, 684, 942 |
| HpySE526I | ACGT | 1 cut(s) | 68 |
| Hsp92I | GRCGYC | 2 cut(s) | 406, 1321 |
| HspAI | GCGC | 3 cut(s) | 38, 406, 421 |
| KasI | GGCGCC | 1 cut(s) | 405 |
| Kzo9I | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| LmnI | GCTCC | 2 cut(s) | 680, 693 |
| Lsp1109I | GCAGC | 1 cut(s) | 517 |
| LweI | GCATC | 2 cut(s) | 653, 847 |
| MaeII | ACGT | 1 cut(s) | 68 |
| MaeIII | GTNAC | 2 cut(s) | 737, 1285 |
| MalI | GATC | 5 cut(s) | 90, 791, 795, 977, 1084 |
| MboI | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| MboII | GAAGA | 6 cut(s) | 243, 479, 617, 731, 1157, 1323 |
| MfeI | CAATTG | 2 cut(s) | 693, 834 |
| MflI | RGATCY | 1 cut(s) | 1082 |
| MhlI | GDGCHC | 2 cut(s) | 690, 1309 |
| MlsI | TGGCCA | 1 cut(s) | 1040 |
| MluCI | AATT | 9 cut(s) | 113, 189, 225, 597, 636, 693, 834, 957, 1202 |
| MluNI | TGGCCA | 1 cut(s) | 1040 |
| Mly113I | GGCGCC | 1 cut(s) | 406 |
| MlyI | GAGTC | 2 cut(s) | 605, 953 |
| MmeI | TCCRAC | 2 cut(s) | 277, 759 |
| Mox20I | TGGCCA | 1 cut(s) | 1040 |
| Mph1103I | ATGCAT | 1 cut(s) | 924 |
| MscI | TGGCCA | 1 cut(s) | 1040 |
| MseI | TTAA | 7 cut(s) | 216, 366, 413, 912, 1100, 1155, 1257 |
| MslI | CAYNNNNRTG | 2 cut(s) | 414, 1034 |
| Msp20I | TGGCCA | 1 cut(s) | 1040 |
| MspR9I | CCNGG | 1 cut(s) | 811 |
| MunI | CAATTG | 2 cut(s) | 693, 834 |
| MvaI | CCWGG | 1 cut(s) | 811 |
| MvnI | CGCG | 2 cut(s) | 40, 423 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 662 |
| NarI | GGCGCC | 1 cut(s) | 406 |
| NcoI | CCATGG | 2 cut(s) | 886, 1086 |
| NdeI | CATATG | 1 cut(s) | 1002 |
| NdeII | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| NlaIV | GGNNCC | 4 cut(s) | 62, 156, 407, 1084 |
| NmuCI | GTSAC | 1 cut(s) | 737 |
| NsiI | ATGCAT | 1 cut(s) | 924 |
| NspI | RCATGY | 1 cut(s) | 1286 |
| PagI | TCATGA | 1 cut(s) | 541 |
| PfeI | GAWTC | 2 cut(s) | 1214, 1328 |
| PflFI | GACNNNGTC | 1 cut(s) | 943 |
| PkrI | GCNGC | 1 cut(s) | 532 |
| PleI | GAGTC | 2 cut(s) | 605, 952 |
| PluTI | GGCGCC | 1 cut(s) | 409 |
| PpsI | GAGTC | 2 cut(s) | 605, 952 |
| PpuMI | RGGWCCY | 1 cut(s) | 155 |
| Psp124BI | GAGCTC | 1 cut(s) | 690 |
| Psp5II | RGGWCCY | 1 cut(s) | 155 |
| Psp6I | CCWGG | 1 cut(s) | 809 |
| PspGI | CCWGG | 1 cut(s) | 809 |
| PspN4I | GGNNCC | 4 cut(s) | 62, 156, 407, 1084 |
| PspPI | GGNCC | 2 cut(s) | 61, 155 |
| PspPPI | RGGWCCY | 1 cut(s) | 155 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 1082 |
| PsyI | GACNNNGTC | 1 cut(s) | 943 |
| RsaI | GTAC | 3 cut(s) | 180, 988, 1095 |
| RsaNI | GTAC | 3 cut(s) | 179, 987, 1094 |
| RseI | CAYNNNNRTG | 2 cut(s) | 414, 1034 |
| SacI | GAGCTC | 1 cut(s) | 690 |
| SaqAI | TTAA | 7 cut(s) | 216, 366, 413, 912, 1100, 1155, 1257 |
| SatI | GCNGC | 1 cut(s) | 531 |
| Sau3AI | GATC | 5 cut(s) | 88, 789, 793, 975, 1082 |
| Sau96I | GGNCC | 2 cut(s) | 61, 155 |
| SchI | GAGTC | 2 cut(s) | 605, 953 |
| ScrFI | CCNGG | 1 cut(s) | 811 |
| SduI | GDGCHC | 2 cut(s) | 690, 1309 |
| SfaNI | GCATC | 2 cut(s) | 653, 847 |
| SfoI | GGCGCC | 1 cut(s) | 407 |
| SinI | GGWCC | 2 cut(s) | 61, 155 |
| SmiI | ATTTAAAT | 1 cut(s) | 414 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 414, 1034 |
| SmlI | CTYRAG | 1 cut(s) | 1231 |
| SmoI | CTYRAG | 1 cut(s) | 1231 |
| Sse9I | AATT | 9 cut(s) | 113, 189, 225, 597, 636, 693, 834, 957, 1202 |
| SsiI | CCGC | 3 cut(s) | 423, 533, 642 |
| SspDI | GGCGCC | 1 cut(s) | 405 |
| SstI | GAGCTC | 1 cut(s) | 690 |
| StyD4I | CCNGG | 1 cut(s) | 809 |
| StyI | CCWWGG | 4 cut(s) | 150, 676, 886, 1086 |
| SwaI | ATTTAAAT | 1 cut(s) | 414 |
| TaaI | ACNGT | 4 cut(s) | 256, 743, 928, 1046 |
| TaiI | ACGT | 1 cut(s) | 71 |
| TaqI | TCGA | 1 cut(s) | 792 |
| TasI | AATT | 9 cut(s) | 113, 189, 225, 597, 636, 693, 834, 957, 1202 |
| TatI | WGTACW | 1 cut(s) | 1093 |
| TfiI | GAWTC | 2 cut(s) | 1214, 1328 |
| Tru1I | TTAA | 7 cut(s) | 216, 366, 413, 912, 1100, 1155, 1257 |
| Tru9I | TTAA | 7 cut(s) | 216, 366, 413, 912, 1100, 1155, 1257 |
| TscAI | CASTG | 1 cut(s) | 846 |
| TseFI | GTSAC | 1 cut(s) | 737 |
| TseI | GCWGC | 1 cut(s) | 530 |
| Tsp45I | GTSAC | 1 cut(s) | 737 |
| TspDTI | ATGAA | 5 cut(s) | 44, 530, 572, 617, 1158 |
| TspRI | CASTG | 1 cut(s) | 846 |
| Tth111I | GACNNNGTC | 1 cut(s) | 943 |
| VneI | GTGCAC | 1 cut(s) | 1305 |
| VpaK11BI | GGWCC | 2 cut(s) | 61, 155 |
| XceI | RCATGY | 1 cut(s) | 1286 |
| XmiI | GTMKAC | 1 cut(s) | 952 |
| Zsp2I | ATGCAT | 1 cut(s) | 924 |