histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 395 - 538 | 7.9e-49 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 19 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 625 |
| AciI | CCGC | 3 cut(s) | 17, 23, 1258 |
| AclWI | GGATC | 2 cut(s) | 1132, 1474 |
| AcoI | YGGCCR | 3 cut(s) | 106, 261, 1375 |
| AcsI | RAATTY | 5 cut(s) | 552, 740, 1101, 1217, 1357 |
| AcuI | CTGAAG | 1 cut(s) | 1431 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 962, 1268 |
| AflIII | ACRYGT | 1 cut(s) | 1494 |
| AgsI | TTSAA | 8 cut(s) | 214, 533, 978, 1223, 1427, 1501, 1588, 1610 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjnI | CCWGG | 2 cut(s) | 431, 1377 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 777, 809 |
| AluBI | AGCT | 7 cut(s) | 621, 767, 1060, 1190, 1303, 1423, 1579 |
| AluI | AGCT | 7 cut(s) | 621, 767, 1060, 1190, 1303, 1423, 1579 |
| Alw21I | GWGCWC | 1 cut(s) | 199 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| AlwI | GGATC | 2 cut(s) | 1132, 1474 |
| Ama87I | CYCGRG | 1 cut(s) | 1195 |
| AoxI | GGCC | 6 cut(s) | 106, 261, 429, 1249, 1375, 1565 |
| ApeKI | GCWGC | 2 cut(s) | 419, 981 |
| ApoI | RAATTY | 5 cut(s) | 552, 740, 1101, 1217, 1357 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 5 cut(s) | 188, 306, 332, 965, 1565 |
| AsuC2I | CCSGG | 2 cut(s) | 1196, 1197 |
| AsuHPI | GGTGA | 4 cut(s) | 123, 1030, 1100, 1223 |
| AsuII | TTCGAA | 1 cut(s) | 615 |
| AvaI | CYCGRG | 1 cut(s) | 1195 |
| AvaII | GGWCC | 4 cut(s) | 188, 306, 332, 965 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 300, 333, 700, 733 |
| BalI | TGGCCA | 2 cut(s) | 108, 263 |
| BanI | GGYRCC | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 1617 |
| Bbv12I | GWGCWC | 1 cut(s) | 199 |
| BbvI | GCAGC | 2 cut(s) | 406, 993 |
| BccI | CCATC | 6 cut(s) | 253, 296, 603, 655, 938, 1520 |
| BceAI | ACGGC | 2 cut(s) | 282, 368 |
| BciT130I | CCWGG | 2 cut(s) | 433, 1379 |
| BciVI | GTATCC | 2 cut(s) | 369, 1018 |
| BclI | TGATCA | 1 cut(s) | 913 |
| BcnI | CCSGG | 2 cut(s) | 1196, 1197 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BfmI | CTRYAG | 1 cut(s) | 825 |
| BfuI | GTATCC | 2 cut(s) | 369, 1018 |
| BglII | AGATCT | 1 cut(s) | 755 |
| BisI | GCNGC | 3 cut(s) | 23, 420, 982 |
| BlsI | GCNGC | 3 cut(s) | 24, 421, 983 |
| Bme1390I | CCNGG | 4 cut(s) | 433, 1196, 1197, 1379 |
| Bme18I | GGWCC | 4 cut(s) | 188, 306, 332, 965 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmeT110I | CYCGRG | 1 cut(s) | 1195 |
| BmgT120I | GGNCC | 5 cut(s) | 188, 306, 332, 965, 1565 |
| BmiI | GGNNCC | 5 cut(s) | 21, 307, 967, 1489, 1566 |
| BmrFI | CCNGG | 4 cut(s) | 433, 1196, 1197, 1379 |
| BmrI | ACTGGG | 1 cut(s) | 963 |
| BmsI | GCATC | 5 cut(s) | 41, 482, 683, 938, 1334 |
| BmuI | ACTGGG | 1 cut(s) | 963 |
| BoxI | GACNNNNGTC | 2 cut(s) | 330, 1517 |
| BpiI | GAAGAC | 1 cut(s) | 1617 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1221, 1253 |
| BpmI | CTGGAG | 1 cut(s) | 1088 |
| Bpu14I | TTCGAA | 1 cut(s) | 615 |
| BpuEI | CTTGAG | 1 cut(s) | 911 |
| BpuMI | CCSGG | 2 cut(s) | 1196, 1197 |
| BsaJI | CCNNGG | 7 cut(s) | 96, 264, 680, 1195, 1267, 1378, 1483 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1191, 1221, 1374, 1404 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 73, 407, 962, 1268 |
| Bse118I | RCCGGY | 1 cut(s) | 1373 |
| Bse1I | ACTGG | 3 cut(s) | 109, 969, 1314 |
| Bse3DI | GCAATG | 1 cut(s) | 1028 |
| BseBI | CCWGG | 2 cut(s) | 433, 1379 |
| BseDI | CCNNGG | 7 cut(s) | 96, 264, 680, 1195, 1267, 1378, 1483 |
| BseGI | GGATG | 3 cut(s) | 698, 880, 901 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 962, 1268 |
| BseMI | GCAATG | 1 cut(s) | 1028 |
| BseMII | CTCAG | 3 cut(s) | 86, 126, 212 |
| BseNI | ACTGG | 3 cut(s) | 109, 969, 1314 |
| BseRI | GAGGAG | 2 cut(s) | 945, 1110 |
| BseXI | GCAGC | 2 cut(s) | 406, 993 |
| BsgI | GTGCAG | 1 cut(s) | 1478 |
| Bsh1236I | CGCG | 1 cut(s) | 625 |
| BshFI | GGCC | 6 cut(s) | 108, 263, 431, 1251, 1377, 1567 |
| BshNI | GGYRCC | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 1 cut(s) | 199 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1195 |
| BsiSI | CCGG | 2 cut(s) | 1196, 1374 |
| BslFI | GGGAC | 4 cut(s) | 404, 536, 951, 1178 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 962, 1268 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 4 cut(s) | 404, 536, 951, 1178 |
| BsnI | GGCC | 6 cut(s) | 108, 263, 431, 1251, 1377, 1567 |
| BsoBI | CYCGRG | 1 cut(s) | 1195 |
| Bsp119I | TTCGAA | 1 cut(s) | 615 |
| Bsp1286I | GDGCHC | 1 cut(s) | 199 |
| Bsp143I | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| Bsp19I | CCATGG | 2 cut(s) | 96, 680 |
| Bsp68I | TCGCGA | 1 cut(s) | 625 |
| BspACI | CCGC | 3 cut(s) | 17, 23, 1258 |
| BspANI | GGCC | 6 cut(s) | 108, 263, 431, 1251, 1377, 1567 |
| BspCNI | CTCAG | 3 cut(s) | 85, 127, 211 |
| BspFNI | CGCG | 1 cut(s) | 625 |
| BspHI | TCATGA | 1 cut(s) | 991 |
| BspLI | GGNNCC | 5 cut(s) | 21, 307, 967, 1489, 1566 |
| BspPI | GGATC | 2 cut(s) | 1132, 1474 |
| BspT104I | TTCGAA | 1 cut(s) | 615 |
| BspT107I | GGYRCC | 1 cut(s) | 19 |
| BsrDI | GCAATG | 1 cut(s) | 1028 |
| BsrFI | RCCGGY | 1 cut(s) | 1373 |
| BsrI | ACTGG | 3 cut(s) | 109, 969, 1314 |
| BssAI | RCCGGY | 1 cut(s) | 1373 |
| BssECI | CCNNGG | 7 cut(s) | 96, 264, 680, 1195, 1267, 1378, 1483 |
| BssMI | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 680, 1267 |
| Bst2UI | CCWGG | 2 cut(s) | 433, 1379 |
| Bst4CI | ACNGT | 3 cut(s) | 713, 821, 1006 |
| Bst6I | CTCTTC | 3 cut(s) | 249, 600, 873 |
| BstBI | TTCGAA | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 3 cut(s) | 623, 698, 769 |
| BstDEI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| BstDSI | CCRYGG | 4 cut(s) | 96, 264, 680, 1483 |
| BstF5I | GGATG | 3 cut(s) | 698, 880, 901 |
| BstFNI | CGCG | 1 cut(s) | 625 |
| BstKTI | GATC | 6 cut(s) | 758, 916, 1140, 1368, 1417, 1482 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BstMBI | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 428, 1257 |
| BstNI | CCWGG | 2 cut(s) | 433, 1379 |
| BstNSI | RCATGY | 1 cut(s) | 1498 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 330, 1517 |
| BstSCI | CCNGG | 4 cut(s) | 431, 1194, 1195, 1377 |
| BstSFI | CTRYAG | 1 cut(s) | 825 |
| BstUI | CGCG | 1 cut(s) | 625 |
| BstV1I | GCAGC | 2 cut(s) | 406, 993 |
| BstV2I | GAAGAC | 1 cut(s) | 1617 |
| BstX2I | RGATCY | 2 cut(s) | 755, 1137 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 439, 944 |
| BstYI | RGATCY | 2 cut(s) | 755, 1137 |
| BsuI | GTATCC | 2 cut(s) | 369, 1018 |
| BsuRI | GGCC | 6 cut(s) | 108, 263, 431, 1251, 1377, 1567 |
| BtgI | CCRYGG | 4 cut(s) | 96, 264, 680, 1483 |
| BtsCI | GGATG | 3 cut(s) | 698, 880, 901 |
| BtsI | GCAGTG | 1 cut(s) | 293 |
| BtsIMutI | CAGTG | 5 cut(s) | 116, 293, 540, 718, 727 |
| BtuMI | TCGCGA | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 3 cut(s) | 623, 698, 769 |
| CciI | TCATGA | 1 cut(s) | 991 |
| Cfr10I | RCCGGY | 1 cut(s) | 1373 |
| Cfr13I | GGNCC | 5 cut(s) | 188, 306, 332, 965, 1565 |
| Cfr9I | CCCGGG | 1 cut(s) | 1195 |
| DdeI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| DpnI | GATC | 6 cut(s) | 757, 915, 1139, 1367, 1416, 1481 |
| DpnII | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| DraI | TTTAAA | 1 cut(s) | 1446 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| EaeI | YGGCCR | 3 cut(s) | 106, 261, 1375 |
| Eam1104I | CTCTTC | 3 cut(s) | 249, 600, 873 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 3 cut(s) | 249, 600, 873 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 680, 1267 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 4 cut(s) | 188, 306, 332, 965 |
| Eco57I | CTGAAG | 1 cut(s) | 1431 |
| Eco88I | CYCGRG | 1 cut(s) | 1195 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1565 |
| EcoRI | GAATTC | 1 cut(s) | 1357 |
| EcoRII | CCWGG | 2 cut(s) | 431, 1377 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 680, 1267 |
| ErhI | CCWWGG | 3 cut(s) | 96, 680, 1267 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1346, 1378, 1498, 1530 |
| FaqI | GGGAC | 4 cut(s) | 404, 536, 951, 1178 |
| FbaI | TGATCA | 1 cut(s) | 913 |
| Fnu4HI | GCNGC | 3 cut(s) | 23, 420, 982 |
| FokI | GGATG | 3 cut(s) | 705, 887, 908 |
| Fsp4HI | GCNGC | 3 cut(s) | 23, 420, 982 |
| GluI | GCNGC | 3 cut(s) | 23, 420, 982 |
| GsuI | CTGGAG | 1 cut(s) | 1088 |
| HaeIII | GGCC | 6 cut(s) | 108, 263, 431, 1251, 1377, 1567 |
| HapII | CCGG | 2 cut(s) | 1196, 1374 |
| HindIII | AAGCTT | 2 cut(s) | 1421, 1577 |
| HinfI | GANTC | 2 cut(s) | 153, 785 |
| HpaII | CCGG | 2 cut(s) | 1196, 1374 |
| HphI | GGTGA | 4 cut(s) | 123, 1030, 1100, 1223 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy188I | TCNGA | 6 cut(s) | 790, 810, 1010, 1043, 1419, 1596 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 74, 167, 347, 624, 890, 992, 1170 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyAV | CCTTC | 3 cut(s) | 78, 1015, 1107 |
| HpyCH4III | ACNGT | 3 cut(s) | 713, 821, 1006 |
| HpyCH4V | TGCA | 6 cut(s) | 601, 696, 771, 1310, 1325, 1459 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 428, 1257 |
| HpyF3I | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| Ksp22I | TGATCA | 1 cut(s) | 913 |
| Kzo9I | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| LmnI | GCTCC | 4 cut(s) | 100, 1187, 1308, 1493 |
| Lsp1109I | GCAGC | 2 cut(s) | 406, 993 |
| LweI | GCATC | 5 cut(s) | 41, 482, 683, 938, 1334 |
| MaeIII | GTNAC | 3 cut(s) | 51, 129, 464 |
| MalI | GATC | 6 cut(s) | 757, 915, 1139, 1367, 1416, 1481 |
| MboI | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| MflI | RGATCY | 2 cut(s) | 755, 1137 |
| MhlI | GDGCHC | 1 cut(s) | 199 |
| MlsI | TGGCCA | 2 cut(s) | 108, 263 |
| MluCI | AATT | 9 cut(s) | 283, 516, 552, 673, 740, 792, 1101, 1217, 1357 |
| MluNI | TGGCCA | 2 cut(s) | 108, 263 |
| MlyI | GAGTC | 1 cut(s) | 162 |
| MmeI | TCCRAC | 2 cut(s) | 255, 1515 |
| Mox20I | TGGCCA | 2 cut(s) | 108, 263 |
| MroXI | GAANNNNTTC | 1 cut(s) | 90 |
| MscI | TGGCCA | 2 cut(s) | 108, 263 |
| MseI | TTAA | 3 cut(s) | 141, 203, 1445 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 915, 942 |
| Msp20I | TGGCCA | 2 cut(s) | 108, 263 |
| MspI | CCGG | 2 cut(s) | 1196, 1374 |
| MspR9I | CCNGG | 4 cut(s) | 433, 1196, 1197, 1379 |
| MvaI | CCWGG | 2 cut(s) | 433, 1379 |
| MvnI | CGCG | 1 cut(s) | 625 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 428, 1257 |
| NciI | CCSGG | 2 cut(s) | 1196, 1197 |
| NcoI | CCATGG | 2 cut(s) | 96, 680 |
| NdeII | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| NlaIV | GGNNCC | 5 cut(s) | 21, 307, 967, 1489, 1566 |
| NmuCI | GTSAC | 2 cut(s) | 51, 129 |
| NruI | TCGCGA | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 1498 |
| NspV | TTCGAA | 1 cut(s) | 615 |
| PagI | TCATGA | 1 cut(s) | 991 |
| PciI | ACATGT | 1 cut(s) | 1494 |
| PdmI | GAANNNNTTC | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 785 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 407 |
| PkrI | GCNGC | 3 cut(s) | 24, 421, 983 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PscI | ACATGT | 1 cut(s) | 1494 |
| PshAI | GACNNNNGTC | 2 cut(s) | 330, 1517 |
| Psp6I | CCWGG | 2 cut(s) | 431, 1377 |
| PspGI | CCWGG | 2 cut(s) | 431, 1377 |
| PspN4I | GGNNCC | 5 cut(s) | 21, 307, 967, 1489, 1566 |
| PspPI | GGNCC | 5 cut(s) | 188, 306, 332, 965, 1565 |
| PsuI | RGATCY | 2 cut(s) | 755, 1137 |
| RruI | TCGCGA | 1 cut(s) | 625 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 915, 942 |
| SaqAI | TTAA | 3 cut(s) | 141, 203, 1445 |
| SatI | GCNGC | 3 cut(s) | 23, 420, 982 |
| Sau3AI | GATC | 6 cut(s) | 755, 913, 1137, 1365, 1414, 1479 |
| Sau96I | GGNCC | 5 cut(s) | 188, 306, 332, 965, 1565 |
| SchI | GAGTC | 1 cut(s) | 162 |
| ScrFI | CCNGG | 4 cut(s) | 433, 1196, 1197, 1379 |
| SduI | GDGCHC | 1 cut(s) | 199 |
| SfaNI | GCATC | 5 cut(s) | 41, 482, 683, 938, 1334 |
| SfcI | CTRYAG | 1 cut(s) | 825 |
| SfuI | TTCGAA | 1 cut(s) | 615 |
| SinI | GGWCC | 4 cut(s) | 188, 306, 332, 965 |
| SmaI | CCCGGG | 1 cut(s) | 1197 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 915, 942 |
| SmlI | CTYRAG | 1 cut(s) | 890 |
| SmoI | CTYRAG | 1 cut(s) | 890 |
| Sse9I | AATT | 9 cut(s) | 283, 516, 552, 673, 740, 792, 1101, 1217, 1357 |
| SsiI | CCGC | 3 cut(s) | 17, 23, 1258 |
| SspI | AATATT | 1 cut(s) | 1550 |
| StyD4I | CCNGG | 4 cut(s) | 431, 1194, 1195, 1377 |
| StyI | CCWWGG | 3 cut(s) | 96, 680, 1267 |
| TaaI | ACNGT | 3 cut(s) | 713, 821, 1006 |
| TaqI | TCGA | 3 cut(s) | 367, 615, 1119 |
| TasI | AATT | 9 cut(s) | 283, 516, 552, 673, 740, 792, 1101, 1217, 1357 |
| TauI | GCSGC | 1 cut(s) | 25 |
| TfiI | GAWTC | 1 cut(s) | 785 |
| Tru1I | TTAA | 3 cut(s) | 141, 203, 1445 |
| Tru9I | TTAA | 3 cut(s) | 141, 203, 1445 |
| TscAI | CASTG | 5 cut(s) | 116, 300, 547, 718, 727 |
| TseFI | GTSAC | 2 cut(s) | 51, 129 |
| TseI | GCWGC | 2 cut(s) | 419, 981 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 129 |
| TspDTI | ATGAA | 9 cut(s) | 618, 657, 798, 891, 915, 1062, 1340, 1409, 1613 |
| TspGWI | ACGGA | 1 cut(s) | 1472 |
| TspMI | CCCGGG | 1 cut(s) | 1195 |
| TspRI | CASTG | 5 cut(s) | 116, 300, 547, 718, 727 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 407 |
| VpaK11BI | GGWCC | 4 cut(s) | 188, 306, 332, 965 |
| XapI | RAATTY | 5 cut(s) | 552, 740, 1101, 1217, 1357 |
| XceI | RCATGY | 1 cut(s) | 1498 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 271 |
| XmaI | CCCGGG | 1 cut(s) | 1195 |
| XmnI | GAANNNNTTC | 1 cut(s) | 90 |