histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 362 - 445 | 1.7e-22 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 19 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 229, 302, 407 |
| AccII | CGCG | 1 cut(s) | 625 |
| AccIII | TCCGGA | 1 cut(s) | 334 |
| AciI | CCGC | 3 cut(s) | 17, 23, 1159 |
| AclWI | GGATC | 1 cut(s) | 1033 |
| AcoI | YGGCCR | 1 cut(s) | 1279 |
| AcsI | RAATTY | 5 cut(s) | 552, 888, 1002, 1118, 1261 |
| AcuI | CTGAAG | 1 cut(s) | 1335 |
| AdeI | CACNNNGTG | 1 cut(s) | 59 |
| AfaI | GTAC | 1 cut(s) | 1190 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 73, 229, 302, 407, 863, 1169 |
| AgsI | TTSAA | 5 cut(s) | 533, 617, 879, 1124, 1330 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjiI | CACGTC | 1 cut(s) | 365 |
| AjnI | CCWGG | 2 cut(s) | 431, 1281 |
| AluBI | AGCT | 6 cut(s) | 383, 621, 961, 1091, 1204, 1326 |
| AluI | AGCT | 6 cut(s) | 383, 621, 961, 1091, 1204, 1326 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| AlwI | GGATC | 1 cut(s) | 1033 |
| Ama87I | CYCGRG | 1 cut(s) | 1096 |
| Aor13HI | TCCGGA | 1 cut(s) | 334 |
| AoxI | GGCC | 4 cut(s) | 429, 566, 1150, 1279 |
| ApeKI | GCWGC | 1 cut(s) | 882 |
| ApoI | RAATTY | 5 cut(s) | 552, 888, 1002, 1118, 1261 |
| AseI | ATTAAT | 1 cut(s) | 1146 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 90, 342 |
| AspS9I | GGNCC | 4 cut(s) | 188, 306, 332, 866 |
| AsuC2I | CCSGG | 2 cut(s) | 1097, 1098 |
| AsuHPI | GGTGA | 5 cut(s) | 119, 285, 931, 1001, 1124 |
| AvaI | CYCGRG | 1 cut(s) | 1096 |
| AvaII | GGWCC | 4 cut(s) | 188, 306, 332, 866 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 300, 333, 1180, 1213 |
| BanI | GGYRCC | 1 cut(s) | 19 |
| BbvI | GCAGC | 1 cut(s) | 894 |
| BccI | CCATC | 4 cut(s) | 296, 603, 655, 839 |
| BciT130I | CCWGG | 2 cut(s) | 433, 1283 |
| BciVI | GTATCC | 1 cut(s) | 369 |
| BclI | TGATCA | 1 cut(s) | 814 |
| BcnI | CCSGG | 2 cut(s) | 1097, 1098 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 1 cut(s) | 968 |
| BfmI | CTRYAG | 1 cut(s) | 726 |
| BfuI | GTATCC | 1 cut(s) | 369 |
| BisI | GCNGC | 2 cut(s) | 23, 883 |
| BlsI | GCNGC | 2 cut(s) | 24, 884 |
| Bme1390I | CCNGG | 4 cut(s) | 433, 1097, 1098, 1283 |
| Bme18I | GGWCC | 4 cut(s) | 188, 306, 332, 866 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmeT110I | CYCGRG | 1 cut(s) | 1096 |
| BmgBI | CACGTC | 1 cut(s) | 365 |
| BmgT120I | GGNCC | 4 cut(s) | 188, 306, 332, 866 |
| BmiI | GGNNCC | 3 cut(s) | 21, 307, 868 |
| BmrFI | CCNGG | 4 cut(s) | 433, 1097, 1098, 1283 |
| BmrI | ACTGGG | 1 cut(s) | 864 |
| BmsI | GCATC | 4 cut(s) | 41, 482, 683, 839 |
| BmuI | ACTGGG | 1 cut(s) | 864 |
| BoxI | GACNNNNGTC | 1 cut(s) | 330 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1122, 1154 |
| BpuEI | CTTGAG | 1 cut(s) | 812 |
| BpuMI | CCSGG | 2 cut(s) | 1097, 1098 |
| BsaJI | CCNNGG | 5 cut(s) | 96, 680, 1096, 1168, 1282 |
| BsaWI | WCCGGW | 1 cut(s) | 334 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1092, 1122, 1278, 1308 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 73, 229, 302, 407, 863, 1169 |
| Bse118I | RCCGGY | 1 cut(s) | 1277 |
| Bse1I | ACTGG | 3 cut(s) | 760, 870, 1215 |
| Bse3DI | GCAATG | 1 cut(s) | 929 |
| BseAI | TCCGGA | 1 cut(s) | 334 |
| BseBI | CCWGG | 2 cut(s) | 433, 1283 |
| BseDI | CCNNGG | 5 cut(s) | 96, 680, 1096, 1168, 1282 |
| BseGI | GGATG | 3 cut(s) | 698, 781, 802 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 73, 229, 302, 407, 863, 1169 |
| BseMI | GCAATG | 1 cut(s) | 929 |
| BseMII | CTCAG | 4 cut(s) | 86, 126, 212, 534 |
| BseNI | ACTGG | 3 cut(s) | 760, 870, 1215 |
| BseRI | GAGGAG | 2 cut(s) | 846, 1011 |
| BseXI | GCAGC | 1 cut(s) | 894 |
| Bsh1236I | CGCG | 1 cut(s) | 625 |
| BshFI | GGCC | 4 cut(s) | 431, 568, 1152, 1281 |
| BshNI | GGYRCC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1096 |
| BsiSI | CCGG | 4 cut(s) | 335, 827, 1097, 1278 |
| BslFI | GGGAC | 4 cut(s) | 404, 536, 852, 1079 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 73, 229, 302, 407, 863, 1169 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 4 cut(s) | 404, 536, 852, 1079 |
| BsnI | GGCC | 4 cut(s) | 431, 568, 1152, 1281 |
| BsoBI | CYCGRG | 1 cut(s) | 1096 |
| Bsp13I | TCCGGA | 1 cut(s) | 334 |
| Bsp143I | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| Bsp19I | CCATGG | 2 cut(s) | 96, 680 |
| Bsp68I | TCGCGA | 1 cut(s) | 625 |
| BspACI | CCGC | 3 cut(s) | 17, 23, 1159 |
| BspANI | GGCC | 4 cut(s) | 431, 568, 1152, 1281 |
| BspCNI | CTCAG | 4 cut(s) | 85, 127, 211, 535 |
| BspEI | TCCGGA | 1 cut(s) | 334 |
| BspFNI | CGCG | 1 cut(s) | 625 |
| BspHI | TCATGA | 1 cut(s) | 892 |
| BspLI | GGNNCC | 3 cut(s) | 21, 307, 868 |
| BspPI | GGATC | 1 cut(s) | 1033 |
| BspT107I | GGYRCC | 1 cut(s) | 19 |
| BsrDI | GCAATG | 1 cut(s) | 929 |
| BsrFI | RCCGGY | 1 cut(s) | 1277 |
| BsrI | ACTGG | 3 cut(s) | 760, 870, 1215 |
| BssAI | RCCGGY | 1 cut(s) | 1277 |
| BssECI | CCNNGG | 5 cut(s) | 96, 680, 1096, 1168, 1282 |
| BssMI | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 680, 1168 |
| Bst2UI | CCWGG | 2 cut(s) | 433, 1283 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 722, 907, 1249 |
| Bst6I | CTCTTC | 1 cut(s) | 774 |
| BstC8I | GCNNGC | 2 cut(s) | 623, 698 |
| BstDEI | CTNAG | 5 cut(s) | 72, 126, 135, 198, 543 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 680 |
| BstF5I | GGATG | 3 cut(s) | 698, 781, 802 |
| BstFNI | CGCG | 1 cut(s) | 625 |
| BstKTI | GATC | 4 cut(s) | 817, 1041, 1272, 1321 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1158 |
| BstNI | CCWGG | 2 cut(s) | 433, 1283 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 330 |
| BstSCI | CCNGG | 4 cut(s) | 431, 1095, 1096, 1281 |
| BstSFI | CTRYAG | 1 cut(s) | 726 |
| BstUI | CGCG | 1 cut(s) | 625 |
| BstV1I | GCAGC | 1 cut(s) | 894 |
| BstX2I | RGATCY | 1 cut(s) | 1038 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 439, 845 |
| BstYI | RGATCY | 1 cut(s) | 1038 |
| BsuI | GTATCC | 1 cut(s) | 369 |
| BsuRI | GGCC | 4 cut(s) | 431, 568, 1152, 1281 |
| BtgI | CCRYGG | 2 cut(s) | 96, 680 |
| BtrI | CACGTC | 1 cut(s) | 365 |
| BtsCI | GGATG | 3 cut(s) | 698, 781, 802 |
| BtsIMutI | CAGTG | 2 cut(s) | 540, 753 |
| BtuMI | TCGCGA | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 2 cut(s) | 623, 698 |
| CciI | TCATGA | 1 cut(s) | 892 |
| Cfr10I | RCCGGY | 1 cut(s) | 1277 |
| Cfr13I | GGNCC | 4 cut(s) | 188, 306, 332, 866 |
| Cfr9I | CCCGGG | 1 cut(s) | 1096 |
| Csp6I | GTAC | 1 cut(s) | 1189 |
| CviAII | CATG | 8 cut(s) | 97, 104, 602, 681, 812, 818, 834, 893 |
| CviQI | GTAC | 1 cut(s) | 1189 |
| DdeI | CTNAG | 5 cut(s) | 72, 126, 135, 198, 543 |
| DpnI | GATC | 4 cut(s) | 816, 1040, 1271, 1320 |
| DpnII | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| DraIII | CACNNNGTG | 1 cut(s) | 59 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| EaeI | YGGCCR | 1 cut(s) | 1279 |
| Eam1104I | CTCTTC | 1 cut(s) | 774 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 774 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 680, 1168 |
| Eco147I | AGGCCT | 1 cut(s) | 568 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco47I | GGWCC | 4 cut(s) | 188, 306, 332, 866 |
| Eco57I | CTGAAG | 1 cut(s) | 1335 |
| Eco88I | CYCGRG | 1 cut(s) | 1096 |
| EcoRI | GAATTC | 1 cut(s) | 1261 |
| EcoRII | CCWGG | 2 cut(s) | 431, 1281 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 680, 1168 |
| ErhI | CCWWGG | 3 cut(s) | 96, 680, 1168 |
| FaeI | CATG | 8 cut(s) | 100, 107, 605, 684, 815, 821, 837, 896 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1250, 1282 |
| FaqI | GGGAC | 4 cut(s) | 404, 536, 852, 1079 |
| FatI | CATG | 8 cut(s) | 96, 103, 601, 680, 811, 817, 833, 892 |
| FbaI | TGATCA | 1 cut(s) | 814 |
| Fnu4HI | GCNGC | 2 cut(s) | 23, 883 |
| FokI | GGATG | 3 cut(s) | 705, 788, 809 |
| Fsp4HI | GCNGC | 2 cut(s) | 23, 883 |
| FspBI | CTAG | 1 cut(s) | 968 |
| GluI | GCNGC | 2 cut(s) | 23, 883 |
| HaeIII | GGCC | 4 cut(s) | 431, 568, 1152, 1281 |
| HapII | CCGG | 4 cut(s) | 335, 827, 1097, 1278 |
| Hin1II | CATG | 8 cut(s) | 100, 107, 605, 684, 815, 821, 837, 896 |
| HindIII | AAGCTT | 1 cut(s) | 1324 |
| HinfI | GANTC | 2 cut(s) | 153, 516 |
| HpaII | CCGG | 4 cut(s) | 335, 827, 1097, 1278 |
| HphI | GGTGA | 5 cut(s) | 119, 285, 931, 1001, 1124 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy188I | TCNGA | 2 cut(s) | 911, 944 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyAV | CCTTC | 3 cut(s) | 78, 253, 1008 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 722, 907, 1249 |
| HpyCH4IV | ACGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 2 cut(s) | 696, 1211 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1158 |
| HpyF3I | CTNAG | 5 cut(s) | 72, 126, 135, 198, 543 |
| HpySE526I | ACGT | 1 cut(s) | 364 |
| Hsp92II | CATG | 8 cut(s) | 100, 107, 605, 684, 815, 821, 837, 896 |
| Kpn2I | TCCGGA | 1 cut(s) | 334 |
| Ksp22I | TGATCA | 1 cut(s) | 814 |
| Kzo9I | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| LmnI | GCTCC | 3 cut(s) | 100, 1088, 1209 |
| Lsp1109I | GCAGC | 1 cut(s) | 894 |
| LweI | GCATC | 4 cut(s) | 41, 482, 683, 839 |
| MaeI | CTAG | 1 cut(s) | 968 |
| MaeII | ACGT | 1 cut(s) | 364 |
| MaeIII | GTNAC | 4 cut(s) | 51, 129, 464, 1222 |
| MalI | GATC | 4 cut(s) | 816, 1040, 1271, 1320 |
| MboI | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| MboII | GAAGA | 7 cut(s) | 617, 620, 697, 727, 791, 986, 1328 |
| MflI | RGATCY | 1 cut(s) | 1038 |
| MluCI | AATT | 6 cut(s) | 552, 673, 888, 1002, 1118, 1261 |
| MlyI | GAGTC | 1 cut(s) | 162 |
| MmeI | TCCRAC | 1 cut(s) | 255 |
| MroI | TCCGGA | 1 cut(s) | 334 |
| MroXI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| MseI | TTAA | 3 cut(s) | 203, 1146, 1348 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 816, 843 |
| MspI | CCGG | 4 cut(s) | 335, 827, 1097, 1278 |
| MspR9I | CCNGG | 4 cut(s) | 433, 1097, 1098, 1283 |
| MvaI | CCWGG | 2 cut(s) | 433, 1283 |
| MvnI | CGCG | 1 cut(s) | 625 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1158 |
| NciI | CCSGG | 2 cut(s) | 1097, 1098 |
| NcoI | CCATGG | 2 cut(s) | 96, 680 |
| NdeII | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| NlaIII | CATG | 8 cut(s) | 100, 107, 605, 684, 815, 821, 837, 896 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 307, 868 |
| NmuCI | GTSAC | 1 cut(s) | 51 |
| NruI | TCGCGA | 1 cut(s) | 625 |
| PagI | TCATGA | 1 cut(s) | 892 |
| PceI | AGGCCT | 1 cut(s) | 568 |
| PdmI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| PfeI | GAWTC | 1 cut(s) | 516 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 229, 302, 407 |
| PkrI | GCNGC | 2 cut(s) | 24, 884 |
| PleI | GAGTC | 1 cut(s) | 161 |
| PpsI | GAGTC | 1 cut(s) | 161 |
| PshAI | GACNNNNGTC | 1 cut(s) | 330 |
| PshBI | ATTAAT | 1 cut(s) | 1146 |
| Psp6I | CCWGG | 2 cut(s) | 431, 1281 |
| PspGI | CCWGG | 2 cut(s) | 431, 1281 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 307, 868 |
| PspPI | GGNCC | 4 cut(s) | 188, 306, 332, 866 |
| PsuI | RGATCY | 1 cut(s) | 1038 |
| RruI | TCGCGA | 1 cut(s) | 625 |
| RsaI | GTAC | 1 cut(s) | 1190 |
| RsaNI | GTAC | 1 cut(s) | 1189 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 816, 843 |
| SaqAI | TTAA | 3 cut(s) | 203, 1146, 1348 |
| SatI | GCNGC | 2 cut(s) | 23, 883 |
| Sau3AI | GATC | 4 cut(s) | 814, 1038, 1269, 1318 |
| Sau96I | GGNCC | 4 cut(s) | 188, 306, 332, 866 |
| SchI | GAGTC | 1 cut(s) | 162 |
| ScrFI | CCNGG | 4 cut(s) | 433, 1097, 1098, 1283 |
| SfaNI | GCATC | 4 cut(s) | 41, 482, 683, 839 |
| SfcI | CTRYAG | 1 cut(s) | 726 |
| SinI | GGWCC | 4 cut(s) | 188, 306, 332, 866 |
| SmaI | CCCGGG | 1 cut(s) | 1098 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 816, 843 |
| SmlI | CTYRAG | 1 cut(s) | 791 |
| SmoI | CTYRAG | 1 cut(s) | 791 |
| Sse9I | AATT | 6 cut(s) | 552, 673, 888, 1002, 1118, 1261 |
| SseBI | AGGCCT | 1 cut(s) | 568 |
| SsiI | CCGC | 3 cut(s) | 17, 23, 1159 |
| SspMI | CTAG | 1 cut(s) | 968 |
| StuI | AGGCCT | 1 cut(s) | 568 |
| StyD4I | CCNGG | 4 cut(s) | 431, 1095, 1096, 1281 |
| StyI | CCWWGG | 3 cut(s) | 96, 680, 1168 |
| TaaI | ACNGT | 4 cut(s) | 163, 722, 907, 1249 |
| TaiI | ACGT | 1 cut(s) | 367 |
| TaqI | TCGA | 3 cut(s) | 38, 367, 1020 |
| TasI | AATT | 6 cut(s) | 552, 673, 888, 1002, 1118, 1261 |
| TauI | GCSGC | 1 cut(s) | 25 |
| TfiI | GAWTC | 1 cut(s) | 516 |
| Tru1I | TTAA | 3 cut(s) | 203, 1146, 1348 |
| Tru9I | TTAA | 3 cut(s) | 203, 1146, 1348 |
| TscAI | CASTG | 2 cut(s) | 547, 760 |
| TseFI | GTSAC | 1 cut(s) | 51 |
| TseI | GCWGC | 1 cut(s) | 882 |
| Tsp45I | GTSAC | 1 cut(s) | 51 |
| TspDTI | ATGAA | 9 cut(s) | 411, 618, 657, 792, 816, 881, 963, 1241, 1313 |
| TspMI | CCCGGG | 1 cut(s) | 1096 |
| TspRI | CASTG | 2 cut(s) | 547, 760 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 229, 302, 407 |
| VpaK11BI | GGWCC | 4 cut(s) | 188, 306, 332, 866 |
| VspI | ATTAAT | 1 cut(s) | 1146 |
| XapI | RAATTY | 5 cut(s) | 552, 888, 1002, 1118, 1261 |
| XmaI | CCCGGG | 1 cut(s) | 1096 |
| XmnI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| XspI | CTAG | 1 cut(s) | 968 |