histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 453 |
| AarI | CACCTGC | 1 cut(s) | 943 |
| Acc36I | ACCTGC | 1 cut(s) | 943 |
| AccB1I | GGYRCC | 3 cut(s) | 533, 656, 1396 |
| AccBSI | CCGCTC | 2 cut(s) | 903, 1503 |
| AccI | GTMKAC | 1 cut(s) | 857 |
| AccII | CGCG | 2 cut(s) | 280, 336 |
| AccIII | TCCGGA | 1 cut(s) | 636 |
| AclI | AACGTT | 1 cut(s) | 438 |
| AclWI | GGATC | 3 cut(s) | 597, 610, 1336 |
| AcoI | YGGCCR | 3 cut(s) | 275, 1059, 1156 |
| AcsI | RAATTY | 2 cut(s) | 428, 1329 |
| AcuI | CTGAAG | 3 cut(s) | 15, 21, 1965 |
| AcyI | GRCGYC | 2 cut(s) | 339, 1122 |
| AfaI | GTAC | 2 cut(s) | 1586, 1637 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 152, 155, 264, 1549, 1754 |
| AflII | CTTAAG | 1 cut(s) | 302 |
| AflIII | ACRYGT | 2 cut(s) | 543, 1688 |
| AgsI | TTSAA | 4 cut(s) | 119, 1271, 1334, 1642 |
| AhlI | ACTAGT | 1 cut(s) | 644 |
| AjiI | CACGTC | 1 cut(s) | 217 |
| AjnI | CCWGG | 3 cut(s) | 374, 1061, 1667 |
| Alw21I | GWGCWC | 3 cut(s) | 189, 1080, 1086 |
| Alw26I | GTCTC | 4 cut(s) | 281, 965, 1113, 1505 |
| AlwI | GGATC | 3 cut(s) | 597, 610, 1336 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 212, 1835, 1874 |
| Aor13HI | TCCGGA | 1 cut(s) | 636 |
| ApoI | RAATTY | 2 cut(s) | 428, 1329 |
| AseI | ATTAAT | 1 cut(s) | 771 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 438 |
| AspLEI | GCGC | 2 cut(s) | 298, 526 |
| AsuC2I | CCSGG | 3 cut(s) | 478, 696, 740 |
| AsuHPI | GGTGA | 3 cut(s) | 967, 1196, 1910 |
| AsuII | TTCGAA | 1 cut(s) | 432 |
| AsuNHI | GCTAGC | 1 cut(s) | 382 |
| AvaII | GGWCC | 7 cut(s) | 255, 312, 353, 459, 562, 692, 1225 |
| BalI | TGGCCA | 1 cut(s) | 1061 |
| BamHI | GGATCC | 1 cut(s) | 602 |
| BanI | GGYRCC | 3 cut(s) | 533, 656, 1396 |
| BanII | GRGCYC | 2 cut(s) | 189, 1086 |
| BauI | CACGAG | 3 cut(s) | 865, 913, 1079 |
| BbsI | GAAGAC | 1 cut(s) | 1970 |
| Bbv12I | GWGCWC | 3 cut(s) | 189, 1080, 1086 |
| BbvCI | CCTCAGC | 1 cut(s) | 1496 |
| BccI | CCATC | 6 cut(s) | 140, 267, 313, 614, 919, 1051 |
| BceAI | ACGGC | 7 cut(s) | 155, 505, 547, 823, 838, 1195, 1337 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1694, 1728 |
| BciT130I | CCWGG | 3 cut(s) | 376, 1063, 1669 |
| BciVI | GTATCC | 1 cut(s) | 1725 |
| BclI | TGATCA | 2 cut(s) | 1876, 1900 |
| BcnI | CCSGG | 3 cut(s) | 478, 696, 740 |
| BcoDI | GTCTC | 4 cut(s) | 281, 965, 1113, 1505 |
| BcuI | ACTAGT | 1 cut(s) | 644 |
| BfaI | CTAG | 4 cut(s) | 383, 645, 1515, 1749 |
| BfmI | CTRYAG | 1 cut(s) | 1142 |
| BfoI | RGCGCY | 2 cut(s) | 299, 527 |
| BfrI | CTTAAG | 1 cut(s) | 302 |
| BfuAI | ACCTGC | 1 cut(s) | 943 |
| BfuI | GTATCC | 1 cut(s) | 1725 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 56, 1109 |
| BmcAI | AGTACT | 1 cut(s) | 1637 |
| Bme1390I | CCNGG | 6 cut(s) | 376, 478, 696, 740, 1063, 1669 |
| Bme18I | GGWCC | 7 cut(s) | 255, 312, 353, 459, 562, 692, 1225 |
| BmgBI | CACGTC | 1 cut(s) | 217 |
| BmiI | GGNNCC | 8 cut(s) | 58, 256, 355, 535, 604, 658, 693, 1398 |
| BmrFI | CCNGG | 6 cut(s) | 376, 478, 696, 740, 1063, 1669 |
| BmtI | GCTAGC | 1 cut(s) | 386 |
| BpiI | GAAGAC | 1 cut(s) | 1970 |
| BpmI | CTGGAG | 4 cut(s) | 27, 539, 1287, 1529 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1496 |
| Bpu14I | TTCGAA | 1 cut(s) | 432 |
| BpuEI | CTTGAG | 3 cut(s) | 1077, 1296, 1800 |
| BpuMI | CCSGG | 3 cut(s) | 478, 696, 740 |
| BsaHI | GRCGYC | 2 cut(s) | 339, 1122 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 529, 738, 762, 1467 |
| BsaWI | WCCGGW | 5 cut(s) | 200, 583, 636, 673, 1722 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 565, 595, 776, 806, 1502, 1532 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 152, 155, 264, 1549, 1754 |
| Bse118I | RCCGGY | 5 cut(s) | 148, 559, 752, 1154, 1807 |
| Bse1I | ACTGG | 4 cut(s) | 707, 1265, 1512, 1713 |
| BseAI | TCCGGA | 1 cut(s) | 636 |
| BseBI | CCWGG | 3 cut(s) | 376, 1063, 1669 |
| BseDI | CCNNGG | 5 cut(s) | 75, 529, 738, 762, 1467 |
| BseGI | GGATG | 7 cut(s) | 91, 328, 645, 927, 1279, 1575, 1717 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 152, 155, 264, 1549, 1754 |
| BseMII | CTCAG | 3 cut(s) | 1058, 1370, 1487 |
| BseNI | ACTGG | 4 cut(s) | 707, 1265, 1512, 1713 |
| BseRI | GAGGAG | 9 cut(s) | 171, 781, 784, 787, 790, 1191, 1443, 1513, 1568 |
| BseYI | CCCAGC | 1 cut(s) | 1529 |
| BsgI | GTGCAG | 2 cut(s) | 225, 1827 |
| Bsh1236I | CGCG | 2 cut(s) | 280, 336 |
| BshNI | GGYRCC | 3 cut(s) | 533, 656, 1396 |
| BsiHKAI | GWGCWC | 3 cut(s) | 189, 1080, 1086 |
| BslFI | GGGAC | 3 cut(s) | 339, 706, 1834 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 152, 155, 264, 1549, 1754 |
| BsmAI | GTCTC | 4 cut(s) | 281, 965, 1113, 1505 |
| BsmBI | CGTCTC | 3 cut(s) | 281, 965, 1113 |
| BsmFI | GGGAC | 3 cut(s) | 339, 706, 1834 |
| Bsp119I | TTCGAA | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 3 cut(s) | 189, 1080, 1086 |
| Bsp13I | TCCGGA | 1 cut(s) | 636 |
| Bsp143I | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| Bsp19I | CCATGG | 2 cut(s) | 75, 762 |
| BspCNI | CTCAG | 3 cut(s) | 1059, 1369, 1488 |
| BspEI | TCCGGA | 1 cut(s) | 636 |
| BspFNI | CGCG | 2 cut(s) | 280, 336 |
| BspHI | TCATGA | 2 cut(s) | 189, 1086 |
| BspLI | GGNNCC | 8 cut(s) | 58, 256, 355, 535, 604, 658, 693, 1398 |
| BspMAI | CTGCAG | 1 cut(s) | 1146 |
| BspMI | ACCTGC | 1 cut(s) | 943 |
| BspOI | GCTAGC | 1 cut(s) | 386 |
| BspPI | GGATC | 3 cut(s) | 597, 610, 1336 |
| BspT104I | TTCGAA | 1 cut(s) | 432 |
| BspT107I | GGYRCC | 3 cut(s) | 533, 656, 1396 |
| BspTI | CTTAAG | 1 cut(s) | 302 |
| BsrBI | CCGCTC | 2 cut(s) | 903, 1503 |
| BsrFI | RCCGGY | 5 cut(s) | 148, 559, 752, 1154, 1807 |
| BsrI | ACTGG | 4 cut(s) | 707, 1265, 1512, 1713 |
| BssAI | RCCGGY | 5 cut(s) | 148, 559, 752, 1154, 1807 |
| BssECI | CCNNGG | 5 cut(s) | 75, 529, 738, 762, 1467 |
| BssMI | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| BssNI | GRCGYC | 2 cut(s) | 339, 1122 |
| BssSI | CACGAG | 3 cut(s) | 865, 913, 1079 |
| BssT1I | CCWWGG | 3 cut(s) | 75, 762, 1467 |
| Bst2BI | CACGAG | 3 cut(s) | 865, 913, 1079 |
| Bst2UI | CCWGG | 3 cut(s) | 376, 1063, 1669 |
| Bst4CI | ACNGT | 3 cut(s) | 1825, 1837, 1864 |
| Bst6I | CTCTTC | 6 cut(s) | 114, 784, 875, 1001, 1040, 1941 |
| BstACI | GRCGYC | 2 cut(s) | 339, 1122 |
| BstAFI | CTTAAG | 1 cut(s) | 302 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 958 |
| BstBI | TTCGAA | 1 cut(s) | 432 |
| BstC8I | GCNNGC | 8 cut(s) | 11, 143, 150, 294, 384, 754, 1101, 1842 |
| BstDEI | CTNAG | 3 cut(s) | 1067, 1356, 1496 |
| BstDSI | CCRYGG | 3 cut(s) | 75, 529, 762 |
| BstF5I | GGATG | 7 cut(s) | 91, 328, 645, 927, 1279, 1575, 1717 |
| BstFNI | CGCG | 2 cut(s) | 280, 336 |
| BstH2I | RGCGCY | 2 cut(s) | 299, 527 |
| BstHHI | GCGC | 2 cut(s) | 298, 526 |
| BstKTI | GATC | 6 cut(s) | 229, 605, 1021, 1344, 1879, 1903 |
| BstMAI | GTCTC | 4 cut(s) | 281, 965, 1113, 1505 |
| BstMBI | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| BstNI | CCWGG | 3 cut(s) | 376, 1063, 1669 |
| BstNSI | RCATGY | 1 cut(s) | 113 |
| BstSCI | CCNGG | 6 cut(s) | 374, 476, 694, 738, 1061, 1667 |
| BstSFI | CTRYAG | 1 cut(s) | 1142 |
| BstUI | CGCG | 2 cut(s) | 280, 336 |
| BstV2I | GAAGAC | 1 cut(s) | 1970 |
| BstX2I | RGATCY | 1 cut(s) | 602 |
| BstYI | RGATCY | 1 cut(s) | 602 |
| BsuI | GTATCC | 1 cut(s) | 1725 |
| BtgI | CCRYGG | 3 cut(s) | 75, 529, 762 |
| BtrI | CACGTC | 1 cut(s) | 217 |
| BtsCI | GGATG | 7 cut(s) | 91, 328, 645, 927, 1279, 1575, 1717 |
| BtsIMutI | CAGTG | 2 cut(s) | 517, 1484 |
| BveI | ACCTGC | 1 cut(s) | 943 |
| Cac8I | GCNNGC | 8 cut(s) | 11, 143, 150, 294, 384, 754, 1101, 1842 |
| CaiI | CAGNNNCTG | 3 cut(s) | 212, 1835, 1874 |
| CciI | TCATGA | 2 cut(s) | 189, 1086 |
| CfoI | GCGC | 2 cut(s) | 298, 526 |
| Cfr10I | RCCGGY | 5 cut(s) | 148, 559, 752, 1154, 1807 |
| CpoI | CGGWCCG | 1 cut(s) | 312 |
| CseI | GACGC | 5 cut(s) | 202, 269, 298, 347, 1130 |
| Csp6I | GTAC | 2 cut(s) | 1585, 1636 |
| CspI | CGGWCCG | 1 cut(s) | 312 |
| CviAII | CATG | 6 cut(s) | 76, 110, 190, 763, 1087, 1229 |
| CviQI | GTAC | 2 cut(s) | 1585, 1636 |
| DdeI | CTNAG | 3 cut(s) | 1067, 1356, 1496 |
| DpnI | GATC | 6 cut(s) | 228, 604, 1020, 1343, 1878, 1902 |
| DpnII | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| EaeI | YGGCCR | 3 cut(s) | 275, 1059, 1156 |
| Eam1104I | CTCTTC | 6 cut(s) | 114, 784, 875, 1001, 1040, 1941 |
| EarI | CTCTTC | 6 cut(s) | 114, 784, 875, 1001, 1040, 1941 |
| EciI | GGCGGA | 6 cut(s) | 98, 157, 546, 921, 1167, 1487 |
| Ecl136II | GAGCTC | 2 cut(s) | 187, 1084 |
| Eco130I | CCWWGG | 3 cut(s) | 75, 762, 1467 |
| Eco24I | GRGCYC | 2 cut(s) | 189, 1086 |
| Eco47I | GGWCC | 7 cut(s) | 255, 312, 353, 459, 562, 692, 1225 |
| Eco53kI | GAGCTC | 2 cut(s) | 187, 1084 |
| Eco57I | CTGAAG | 3 cut(s) | 15, 21, 1965 |
| EcoICRI | GAGCTC | 2 cut(s) | 187, 1084 |
| EcoO109I | RGGNCCY | 1 cut(s) | 353 |
| EcoRII | CCWGG | 3 cut(s) | 374, 1061, 1667 |
| EcoT14I | CCWWGG | 3 cut(s) | 75, 762, 1467 |
| EcoT38I | GRGCYC | 2 cut(s) | 189, 1086 |
| ErhI | CCWWGG | 3 cut(s) | 75, 762, 1467 |
| Esp3I | CGTCTC | 3 cut(s) | 281, 965, 1113 |
| FaeI | CATG | 6 cut(s) | 79, 113, 193, 766, 1090, 1232 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1530, 1562, 1913, 1945 |
| FaqI | GGGAC | 3 cut(s) | 339, 706, 1834 |
| FatI | CATG | 6 cut(s) | 75, 109, 189, 762, 1086, 1228 |
| FauI | CCCGC | 6 cut(s) | 2, 145, 257, 838, 1215, 1353 |
| FbaI | TGATCA | 2 cut(s) | 1876, 1900 |
| FblI | GTMKAC | 1 cut(s) | 857 |
| FokI | GGATG | 7 cut(s) | 98, 335, 652, 934, 1266, 1582, 1724 |
| FriOI | GRGCYC | 2 cut(s) | 189, 1086 |
| FspBI | CTAG | 4 cut(s) | 383, 645, 1515, 1749 |
| GlaI | GCGC | 2 cut(s) | 297, 525 |
| GsaI | CCCAGC | 1 cut(s) | 1533 |
| GsuI | CTGGAG | 4 cut(s) | 27, 539, 1287, 1529 |
| HaeII | RGCGCY | 2 cut(s) | 299, 527 |
| HgaI | GACGC | 5 cut(s) | 202, 269, 298, 347, 1130 |
| HhaI | GCGC | 2 cut(s) | 298, 526 |
| Hin1I | GRCGYC | 2 cut(s) | 339, 1122 |
| Hin1II | CATG | 6 cut(s) | 79, 113, 193, 766, 1090, 1232 |
| Hin6I | GCGC | 2 cut(s) | 296, 524 |
| HinP1I | GCGC | 2 cut(s) | 296, 524 |
| HincII | GTYRAC | 1 cut(s) | 858 |
| HindII | GTYRAC | 1 cut(s) | 858 |
| HindIII | AAGCTT | 1 cut(s) | 1038 |
| HinfI | GANTC | 5 cut(s) | 307, 940, 1090, 1594, 1924 |
| HphI | GGTGA | 3 cut(s) | 967, 1196, 1910 |
| Hpy166II | GTNNAC | 4 cut(s) | 442, 565, 858, 1192 |
| Hpy188I | TCNGA | 6 cut(s) | 316, 602, 945, 1023, 1359, 1788 |
| Hpy8I | GTNNAC | 4 cut(s) | 442, 565, 858, 1192 |
| Hpy99I | CGWCG | 7 cut(s) | 341, 836, 859, 862, 892, 895, 1225 |
| HpyAV | CCTTC | 5 cut(s) | 47, 340, 461, 912, 1645 |
| HpyCH4III | ACNGT | 3 cut(s) | 1825, 1837, 1864 |
| HpyCH4IV | ACGT | 5 cut(s) | 216, 438, 543, 1188, 1688 |
| HpyF3I | CTNAG | 3 cut(s) | 1067, 1356, 1496 |
| HpySE526I | ACGT | 5 cut(s) | 216, 438, 543, 1188, 1688 |
| Hsp92I | GRCGYC | 2 cut(s) | 339, 1122 |
| Hsp92II | CATG | 6 cut(s) | 79, 113, 193, 766, 1090, 1232 |
| HspAI | GCGC | 2 cut(s) | 296, 524 |
| Kpn2I | TCCGGA | 1 cut(s) | 636 |
| KroI | GCCGGC | 2 cut(s) | 148, 752 |
| KroNI | GCCGGC | 2 cut(s) | 150, 754 |
| Ksp22I | TGATCA | 2 cut(s) | 1876, 1900 |
| Kzo9I | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| LmnI | GCTCC | 9 cut(s) | 26, 46, 158, 531, 794, 1012, 1204, 1384, 1500 |
| MaeI | CTAG | 4 cut(s) | 383, 645, 1515, 1749 |
| MaeII | ACGT | 5 cut(s) | 216, 438, 543, 1188, 1688 |
| MaeIII | GTNAC | 4 cut(s) | 64, 395, 497, 1231 |
| MalI | GATC | 6 cut(s) | 228, 604, 1020, 1343, 1878, 1902 |
| MbiI | CCGCTC | 2 cut(s) | 903, 1503 |
| MboI | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| MfeI | CAATTG | 1 cut(s) | 1169 |
| MflI | RGATCY | 1 cut(s) | 602 |
| MhlI | GDGCHC | 3 cut(s) | 189, 1080, 1086 |
| MlsI | TGGCCA | 1 cut(s) | 1061 |
| MluCI | AATT | 8 cut(s) | 175, 428, 702, 772, 1149, 1169, 1274, 1329 |
| MluNI | TGGCCA | 1 cut(s) | 1061 |
| MlyI | GAGTC | 1 cut(s) | 1084 |
| MmeI | TCCRAC | 1 cut(s) | 807 |
| Mox20I | TGGCCA | 1 cut(s) | 1061 |
| MreI | CGCCGGCG | 1 cut(s) | 148 |
| MroI | TCCGGA | 1 cut(s) | 636 |
| MroNI | GCCGGC | 2 cut(s) | 148, 752 |
| MroXI | GAANNNNTTC | 1 cut(s) | 438 |
| MscI | TGGCCA | 1 cut(s) | 1061 |
| MseI | TTAA | 2 cut(s) | 303, 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 761 |
| Msp20I | TGGCCA | 1 cut(s) | 1061 |
| MspA1I | CMGCKG | 5 cut(s) | 47, 62, 212, 654, 1307 |
| MspCI | CTTAAG | 1 cut(s) | 302 |
| MspR9I | CCNGG | 6 cut(s) | 376, 478, 696, 740, 1063, 1669 |
| MunI | CAATTG | 1 cut(s) | 1169 |
| MvaI | CCWGG | 3 cut(s) | 376, 1063, 1669 |
| MvnI | CGCG | 2 cut(s) | 280, 336 |
| NaeI | GCCGGC | 2 cut(s) | 150, 754 |
| NciI | CCSGG | 3 cut(s) | 478, 696, 740 |
| NcoI | CCATGG | 2 cut(s) | 75, 762 |
| NdeII | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| NgoMIV | GCCGGC | 2 cut(s) | 148, 752 |
| NheI | GCTAGC | 1 cut(s) | 382 |
| NlaIII | CATG | 6 cut(s) | 79, 113, 193, 766, 1090, 1232 |
| NlaIV | GGNNCC | 8 cut(s) | 58, 256, 355, 535, 604, 658, 693, 1398 |
| NmeAIII | GCCGAG | 1 cut(s) | 1716 |
| NmuCI | GTSAC | 1 cut(s) | 1231 |
| NspI | RCATGY | 1 cut(s) | 113 |
| NspV | TTCGAA | 1 cut(s) | 432 |
| PagI | TCATGA | 2 cut(s) | 189, 1086 |
| PaqCI | CACCTGC | 1 cut(s) | 943 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 813, 822, 831, 863 |
| PdiI | GCCGGC | 2 cut(s) | 150, 754 |
| PdmI | GAANNNNTTC | 1 cut(s) | 438 |
| PfeI | GAWTC | 4 cut(s) | 307, 940, 1594, 1924 |
| PfoI | TCCNGGA | 1 cut(s) | 374 |
| PleI | GAGTC | 1 cut(s) | 1084 |
| PpsI | GAGTC | 1 cut(s) | 1084 |
| PpuMI | RGGWCCY | 1 cut(s) | 353 |
| PshBI | ATTAAT | 1 cut(s) | 771 |
| PsiI | TTATAA | 1 cut(s) | 453 |
| Psp124BI | GAGCTC | 2 cut(s) | 189, 1086 |
| Psp1406I | AACGTT | 1 cut(s) | 438 |
| Psp5II | RGGWCCY | 1 cut(s) | 353 |
| Psp6I | CCWGG | 3 cut(s) | 374, 1061, 1667 |
| PspFI | CCCAGC | 1 cut(s) | 1529 |
| PspGI | CCWGG | 3 cut(s) | 374, 1061, 1667 |
| PspN4I | GGNNCC | 8 cut(s) | 58, 256, 355, 535, 604, 658, 693, 1398 |
| PspPPI | RGGWCCY | 1 cut(s) | 353 |
| PstI | CTGCAG | 1 cut(s) | 1146 |
| PstNI | CAGNNNCTG | 3 cut(s) | 212, 1835, 1874 |
| PsuI | RGATCY | 1 cut(s) | 602 |
| PvuII | CAGCTG | 3 cut(s) | 47, 212, 1307 |
| RsaI | GTAC | 2 cut(s) | 1586, 1637 |
| RsaNI | GTAC | 2 cut(s) | 1585, 1636 |
| RseI | CAYNNNNRTG | 1 cut(s) | 761 |
| Rsr2I | CGGWCCG | 1 cut(s) | 312 |
| RsrII | CGGWCCG | 1 cut(s) | 312 |
| SacI | GAGCTC | 2 cut(s) | 189, 1086 |
| SalI | GTCGAC | 1 cut(s) | 856 |
| SaqAI | TTAA | 2 cut(s) | 303, 771 |
| Sau3AI | GATC | 6 cut(s) | 226, 602, 1018, 1341, 1876, 1900 |
| ScaI | AGTACT | 1 cut(s) | 1637 |
| SchI | GAGTC | 1 cut(s) | 1084 |
| ScrFI | CCNGG | 6 cut(s) | 376, 478, 696, 740, 1063, 1669 |
| SduI | GDGCHC | 3 cut(s) | 189, 1080, 1086 |
| SfcI | CTRYAG | 1 cut(s) | 1142 |
| SfuI | TTCGAA | 1 cut(s) | 432 |
| SgrAI | CRCCGGYG | 1 cut(s) | 148 |
| SgrDI | CGTCGACG | 1 cut(s) | 856 |
| SinI | GGWCC | 7 cut(s) | 255, 312, 353, 459, 562, 692, 1225 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 761 |
| SmlI | CTYRAG | 4 cut(s) | 302, 1092, 1311, 1815 |
| SmoI | CTYRAG | 4 cut(s) | 302, 1092, 1311, 1815 |
| SpeI | ACTAGT | 1 cut(s) | 644 |
| Sse9I | AATT | 8 cut(s) | 175, 428, 702, 772, 1149, 1169, 1274, 1329 |
| SspMI | CTAG | 4 cut(s) | 383, 645, 1515, 1749 |
| SstI | GAGCTC | 2 cut(s) | 189, 1086 |
| StyD4I | CCNGG | 6 cut(s) | 374, 476, 694, 738, 1061, 1667 |
| StyI | CCWWGG | 3 cut(s) | 75, 762, 1467 |
| TaaI | ACNGT | 3 cut(s) | 1825, 1837, 1864 |
| TaiI | ACGT | 5 cut(s) | 219, 441, 546, 1191, 1691 |
| TaqI | TCGA | 6 cut(s) | 432, 857, 893, 936, 1340, 1457 |
| TaqII | GACCGA | 2 cut(s) | 300, 1213 |
| TasI | AATT | 8 cut(s) | 175, 428, 702, 772, 1149, 1169, 1274, 1329 |
| TatI | WGTACW | 1 cut(s) | 1635 |
| TfiI | GAWTC | 4 cut(s) | 307, 940, 1594, 1924 |
| Tru1I | TTAA | 2 cut(s) | 303, 771 |
| Tru9I | TTAA | 2 cut(s) | 303, 771 |
| TscAI | CASTG | 2 cut(s) | 517, 1491 |
| TseFI | GTSAC | 1 cut(s) | 1231 |
| Tsp45I | GTSAC | 1 cut(s) | 1231 |
| TspDTI | ATGAA | 2 cut(s) | 962, 1268 |
| TspGWI | ACGGA | 2 cut(s) | 39, 1376 |
| TspRI | CASTG | 2 cut(s) | 517, 1491 |
| Vha464I | CTTAAG | 1 cut(s) | 302 |
| VpaK11BI | GGWCC | 7 cut(s) | 255, 312, 353, 459, 562, 692, 1225 |
| VspI | ATTAAT | 1 cut(s) | 771 |
| XapI | RAATTY | 2 cut(s) | 428, 1329 |
| XceI | RCATGY | 1 cut(s) | 113 |
| XmiI | GTMKAC | 1 cut(s) | 857 |
| XmnI | GAANNNNTTC | 1 cut(s) | 438 |
| XspI | CTAG | 4 cut(s) | 383, 645, 1515, 1749 |
| ZrmI | AGTACT | 1 cut(s) | 1637 |