FvH4_5g30731

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000355
Physical Location & Seq
Reverse (-)
21644005 .. 21644845
841 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30731.t1

Sequence Viewer

Length: 468 bp
ATGAATGTGGGAAGCTCTTGCTGGAGGAGGAACGTAAAAGGCAAACAAATCATTGGAGCTGTCCCGGGTGTTGATATTGGCGATAAGTTTCAGTACCGAGTAGAACTTAACATTGTTGGCCTACATCGCCCAATCCAAGGAGGTATTGATTATGGGAACTTCGGTGGGAAGCTCTTGGCAACCAGTATTGTTGCATCTGGTGGCTATGCTGATGATGTGCGTAATAAGAACTCCTTAATCTATACTGGCCAGGGAGGAAATGTGATGAACACAAAGGACCCTGAAGATCAGAAGCTTGAACGAGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAATTGATGGATGGAAAATTGGAGACAAGACCTTTCTTAGAAACTGACCTGCAAGGTCAAGGCCGCAAATTCATCTATCAGATACATGATCGGCCTTGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

9.55

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 18 - 126 7e-36 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 15, 59, 172, 295
AluI AGCT 4 cut(s) 15, 59, 172, 295
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 4 cut(s) 118, 247, 424, 455
ApoI RAATTY 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 2 cut(s) 65, 66
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 249
BccI CCATC 2 cut(s) 364, 368
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 2 cut(s) 65, 66
BcoDI GTCTC 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 3 cut(s) 65, 66, 251
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 279, 361
BmrFI CCNGG 3 cut(s) 65, 66, 251
BmsI GCATC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 43
BpuMI CCSGG 2 cut(s) 65, 66
BsaJI CCNNGG 5 cut(s) 64, 136, 250, 355, 458
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 183, 250
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 5 cut(s) 64, 136, 250, 355, 458
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 183, 250
BseRI GAGGAG 1 cut(s) 40
BshFI GGCC 4 cut(s) 120, 249, 426, 457
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 4 cut(s) 120, 249, 426, 457
BsoBI CYCGRG 1 cut(s) 64
Bsp143I GATC 3 cut(s) 286, 351, 451
BspACI CCGC 1 cut(s) 427
BspANI GGCC 4 cut(s) 120, 249, 426, 457
BspLI GGNNCC 2 cut(s) 279, 361
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 183, 250
BssECI CCNNGG 5 cut(s) 64, 136, 250, 355, 458
BssMI GATC 3 cut(s) 286, 351, 451
BssT1I CCWWGG 2 cut(s) 136, 458
Bst2UI CCWGG 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 400
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 3 cut(s) 289, 354, 454
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 3 cut(s) 286, 351, 451
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 63, 64, 249
BsuRI GGCC 4 cut(s) 120, 249, 426, 457
BtgI CCRYGG 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 379
BveI ACCTGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 449
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 400
DpnI GATC 3 cut(s) 288, 353, 453
DpnII GATC 3 cut(s) 286, 351, 451
DraI TTTAAA 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 136, 458
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 2 cut(s) 136, 458
ErhI CCWWGG 2 cut(s) 136, 458
FaeI CATG 1 cut(s) 452
FaiI YATR 5 cut(s) 153, 207, 243, 450, 466
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 427
GluI GCNGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 4 cut(s) 120, 249, 426, 457
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 293
HpaII CCGG 1 cut(s) 65
Hpy188I TCNGA 4 cut(s) 291, 347, 364, 444
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 194, 331, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 400
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 452
Kzo9I GATC 3 cut(s) 286, 351, 451
LmnI GCTCC 2 cut(s) 56, 365
LweI GCATC 1 cut(s) 203
MaeII ACGT 1 cut(s) 33
MalI GATC 3 cut(s) 288, 353, 453
MboI GATC 3 cut(s) 286, 351, 451
MboII GAAGA 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 3 cut(s) 365, 380, 431
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 5 cut(s) 18, 21, 134, 248, 296
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 3 cut(s) 108, 236, 317
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 65, 66, 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 2 cut(s) 65, 66
NdeII GATC 3 cut(s) 286, 351, 451
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 2 cut(s) 279, 361
PkrI GCNGC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 279, 361
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 108, 236, 317
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 3 cut(s) 286, 351, 451
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 65, 66, 251
SetI ASST 9 cut(s) 17, 36, 61, 145, 174, 297, 397, 414, 421
SfaNI GCATC 1 cut(s) 203
SinI GGWCC 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 66
Sse9I AATT 3 cut(s) 365, 380, 431
SsiI CCGC 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 63, 64, 249
StyI CCWWGG 2 cut(s) 136, 458
TaiI ACGT 1 cut(s) 36
TasI AATT 3 cut(s) 365, 380, 431
TauI GCSGC 1 cut(s) 429
Tru1I TTAA 3 cut(s) 108, 236, 317
Tru9I TTAA 3 cut(s) 108, 236, 317
TspDTI ATGAA 3 cut(s) 17, 281, 424
TspGWI ACGGA 1 cut(s) 344
TspMI CCCGGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 1 cut(s) 431
XmaI CCCGGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.