Rorug07G0087600

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000355
Physical Location & Seq
Forward (+)
6894002 .. 6897260
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0087600.1

Sequence Viewer

Length: 564 bp
ATGGGCAATGGAAGAGAGGCCTCTCCATTTCCATTGCTTCAGTCTCCCCAAGCTAAAACTCCCCCTCTGAGCACTTGGGAATTCATCAAAGTTTGGTTTTTGATTAAAGGTATGACAAATCAGCAACTTATTGATCATGGACACCAAATGATGGATGAGACTGATCAAGCGATTGATAGAACACAAAGGTTCTTCATCAGACTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGGTTTTCTGCAGTATATGCAGCTTCCTCTGCCATATCTTAAAGTCGGATATCTTACTGGGATACCAAAGTTCTTAGTTTATGGACCCAAAGCAGGGACAAAGAAGAATGAAAATCCTGAAAGGCTTGCATTGAGGTTATTTGGAAGCCTAAAAAATCCCAGAGTGTCTGATCTTTCCCAAGATGAGGAAGAAAACTTGAGCAAAACCCTATTGCCACCATACATCTTTCCAAAGCTTGAAGATGTTGTTTATACAGACCCTCCTGCAAATTCATATAATTTCGGGTTCCCAGTGGAAGATCATGCCTTTTGGTCCTGGTCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

187

Amino Acids

21.72

Weight (kDa)

5.1

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AcsI RAATTY 2 cut(s) 80, 505
AcuI CTGAAG 1 cut(s) 23
AfiI CCNNNNNNNGG 4 cut(s) 151, 329, 330, 421
AgsI TTSAA 2 cut(s) 227, 476
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 3 cut(s) 53, 259, 472
AluI AGCT 3 cut(s) 53, 259, 472
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 48, 152
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 2 cut(s) 80, 505
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspS9I GGNCC 2 cut(s) 320, 549
AvaII GGWCC 2 cut(s) 320, 549
BaeI ACNNNNGTAYC 2 cut(s) 290, 323
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 553
BciVI GTATCC 1 cut(s) 291
BclI TGATCA 2 cut(s) 133, 163
BcoDI GTCTC 2 cut(s) 48, 152
BfaI CTAG 1 cut(s) 562
BfmI CTRYAG 1 cut(s) 245
BfuI GTATCC 1 cut(s) 291
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 553
Bme18I GGWCC 2 cut(s) 320, 549
BmgT120I GGNCC 2 cut(s) 320, 549
BmiI GGNNCC 2 cut(s) 322, 524
BmrFI CCNGG 1 cut(s) 553
BmrI ACTGGG 2 cut(s) 303, 521
BmuI ACTGGG 2 cut(s) 303, 521
BpuEI CTTGAG 1 cut(s) 454
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 329, 330, 421
Bse1I ACTGG 2 cut(s) 298, 527
Bse3DI GCAATG 2 cut(s) 13, 32
BseBI CCWGG 1 cut(s) 553
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 4 cut(s) 151, 329, 330, 421
BseMI GCAATG 2 cut(s) 13, 32
BseMII CTCAG 2 cut(s) 59, 201
BseNI ACTGG 2 cut(s) 298, 527
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 4 cut(s) 151, 329, 330, 421
BsmAI GTCTC 2 cut(s) 48, 152
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 4 cut(s) 133, 163, 406, 535
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 60, 202
BspLI GGNNCC 2 cut(s) 322, 524
BspMAI CTGCAG 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 13, 32
BsrI ACTGG 2 cut(s) 298, 527
BssMI GATC 4 cut(s) 133, 163, 406, 535
Bst2UI CCWGG 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 3 cut(s) 68, 210, 310
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 4 cut(s) 136, 166, 409, 538
BstMAI GTCTC 2 cut(s) 48, 152
BstMBI GATC 4 cut(s) 133, 163, 406, 535
BstMWI GCNNNNNNNGC 2 cut(s) 253, 265
BstNI CCWGG 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 268
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 320, 549
CviAII CATG 2 cut(s) 137, 539
CviJI RGCY 6 cut(s) 20, 53, 259, 361, 384, 472
CviKI_1 RGCY 6 cut(s) 20, 53, 259, 361, 384, 472
DdeI CTNAG 3 cut(s) 68, 210, 310
DpnI GATC 4 cut(s) 135, 165, 408, 537
DpnII GATC 4 cut(s) 133, 163, 406, 535
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco147I AGGCCT 1 cut(s) 20
Eco32I GATATC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 320, 549
Eco57I CTGAAG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 551
EcoRV GATATC 1 cut(s) 287
FaeI CATG 2 cut(s) 140, 542
FaqI GGGAC 1 cut(s) 346
FatI CATG 2 cut(s) 136, 538
FbaI TGATCA 2 cut(s) 133, 163
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 562
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 20
Hin1II CATG 2 cut(s) 140, 542
HindIII AAGCTT 1 cut(s) 470
Hpy188I TCNGA 5 cut(s) 69, 200, 284, 406, 559
Hpy188III TCNNGA 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 247, 256, 365, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 265
HpyF3I CTNAG 3 cut(s) 68, 210, 310
Hsp92II CATG 2 cut(s) 140, 542
Ksp22I TGATCA 2 cut(s) 133, 163
Kzo9I GATC 4 cut(s) 133, 163, 406, 535
LpnPI CCDG 7 cut(s) 279, 315, 366, 409, 513, 538, 540
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 1 cut(s) 562
MalI GATC 4 cut(s) 135, 165, 408, 537
MboI GATC 4 cut(s) 133, 163, 406, 535
MboII GAAGA 6 cut(s) 24, 184, 352, 437, 488, 545
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 80, 505, 514
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 10, 31, 75, 205, 273, 363, 415, 507
MseI TTAA 2 cut(s) 105, 276
MspR9I CCNGG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 2 cut(s) 253, 265
NdeII GATC 4 cut(s) 133, 163, 406, 535
NlaIII CATG 2 cut(s) 140, 542
NlaIV GGNNCC 2 cut(s) 322, 524
PceI AGGCCT 1 cut(s) 20
PctI GAATGC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 322, 524
PspPI GGNCC 2 cut(s) 320, 549
PstI CTGCAG 1 cut(s) 249
SaqAI TTAA 2 cut(s) 105, 276
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 4 cut(s) 133, 163, 406, 535
Sau96I GGNCC 2 cut(s) 320, 549
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 74
SetI ASST 6 cut(s) 55, 112, 191, 261, 374, 474
SfcI CTRYAG 1 cut(s) 245
SinI GGWCC 2 cut(s) 320, 549
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 3 cut(s) 80, 505, 514
SseBI AGGCCT 1 cut(s) 20
SspMI CTAG 1 cut(s) 562
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 551
TasI AATT 3 cut(s) 80, 505, 514
Tru1I TTAA 2 cut(s) 105, 276
Tru9I TTAA 2 cut(s) 105, 276
TscAI CASTG 1 cut(s) 534
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 73, 184, 360, 498
TspRI CASTG 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 320, 549
XapI RAATTY 2 cut(s) 80, 505
XspI CTAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.