Rroxscaffold_3G00252590

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000355
Physical Location & Seq
Forward (+)
46619827 .. 46621017
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252590.1

Sequence Viewer

Length: 1191 bp
ATGTTGCTTATGGAAGATAGTGAGTGTTTTTCCCGTACCAAGTTGCCAGAGTATAAGAGGTGTAGAGTCTCTGCTGTCCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAATTTGAATGCCAATGCTACAGAGAGAATTTCAGATAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGGGATTTTCCTCCTTTCTGTGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCAACATCATCAAAGACAGTGAAGACTAAAGTGAAACAAACAGGACTTGGGAACAAATTTCAACCAAACACTGAGAAGAAAATTGGGGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGGTACAATTCAACTTGATATAAAGAAGAAGGAGTATTATCAGCATGATGAAAAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTTCTTTTGGTTGTAGTAGTTCAAGCCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGAAAACCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGCAACTTCTCTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGGTAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTCATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTCGGTGGTAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAACTATTGGATGGAAGTAGGACATATGTCTATGATGGACTATATTTGGTAGAGAAATATTGGCAGGAAAGAGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAGGCAGTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

396

Amino Acids

44.22

Weight (kDa)

9.48

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 249 - 393 2.2e-49 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 1 cut(s) 541
AclWI GGATC 2 cut(s) 694, 1039
AcoI YGGCCR 2 cut(s) 244, 940
AcsI RAATTY 3 cut(s) 147, 239, 329
AfaI GTAC 4 cut(s) 37, 390, 415, 499
AfiI CCNNNNNNNGG 3 cut(s) 209, 521, 628
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 9 cut(s) 127, 335, 422, 537, 767, 785, 830, 992, 1153
AjnI CCWGG 3 cut(s) 233, 757, 942
AluBI AGCT 4 cut(s) 185, 842, 988, 1144
AluI AGCT 4 cut(s) 185, 842, 988, 1144
Alw26I GTCTC 2 cut(s) 73, 372
AlwI GGATC 2 cut(s) 694, 1039
AoxI GGCC 6 cut(s) 231, 244, 811, 940, 970, 1130
ApaI GGGCCC 1 cut(s) 974
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 147, 239, 329
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 5 cut(s) 101, 865, 970, 971, 1130
AsuHPI GGTGA 2 cut(s) 785, 812
AvaII GGWCC 2 cut(s) 101, 865
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 2 cut(s) 512, 974
BalI TGGCCA 1 cut(s) 942
BanI GGYRCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 497, 1061, 1085
BciT130I CCWGG 3 cut(s) 235, 759, 944
BcoDI GTCTC 2 cut(s) 73, 372
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 2 cut(s) 402, 541
BlsI GCNGC 2 cut(s) 403, 542
Bme1390I CCNGG 3 cut(s) 235, 759, 944
Bme18I GGWCC 2 cut(s) 101, 865
BmgT120I GGNCC 5 cut(s) 101, 865, 970, 971, 1130
BmiI GGNNCC 3 cut(s) 509, 972, 1054
BmrFI CCNGG 3 cut(s) 235, 759, 944
BmsI GCATC 1 cut(s) 896
BoxI GACNNNNGTC 1 cut(s) 1082
BpiI GAAGAC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 783, 815
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 3 cut(s) 136, 689, 960
BsaJI CCNNGG 3 cut(s) 757, 943, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 521, 628
Bse1I ACTGG 3 cut(s) 392, 876, 943
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 3 cut(s) 235, 759, 944
BseDI CCNNGG 3 cut(s) 757, 943, 1048
BseGI GGATG 2 cut(s) 801, 1072
BseLI CCNNNNNNNGG 3 cut(s) 209, 521, 628
BseMII CTCAG 3 cut(s) 219, 336, 558
BseNI ACTGG 3 cut(s) 392, 876, 943
BseRI GAGGAG 1 cut(s) 672
BseSI GKGCMC 2 cut(s) 512, 974
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 6 cut(s) 233, 246, 813, 942, 972, 1132
BshNI GGYRCC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 209, 521, 628
BsmAI GTCTC 2 cut(s) 73, 372
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 6 cut(s) 233, 246, 813, 942, 972, 1132
Bsp120I GGGCCC 1 cut(s) 970
Bsp1286I GDGCHC 2 cut(s) 512, 974
Bsp143I GATC 5 cut(s) 647, 699, 930, 979, 1044
BspACI CCGC 1 cut(s) 541
BspANI GGCC 6 cut(s) 233, 246, 813, 942, 972, 1132
BspCNI CTCAG 3 cut(s) 220, 337, 559
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 3 cut(s) 509, 972, 1054
BspPI GGATC 2 cut(s) 694, 1039
BspT107I GGYRCC 1 cut(s) 507
BsrI ACTGG 3 cut(s) 392, 876, 943
BssECI CCNNGG 3 cut(s) 757, 943, 1048
BssMI GATC 5 cut(s) 647, 699, 930, 979, 1044
Bst2UI CCWGG 3 cut(s) 235, 759, 944
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 228, 345, 567
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 2 cut(s) 801, 1072
BstKTI GATC 5 cut(s) 650, 702, 933, 982, 1047
BstMAI GTCTC 2 cut(s) 73, 372
BstMBI GATC 5 cut(s) 647, 699, 930, 979, 1044
BstNI CCWGG 3 cut(s) 235, 759, 944
BstNSI RCATGY 1 cut(s) 743
BstPAI GACNNNNGTC 1 cut(s) 1082
BstSCI CCNGG 3 cut(s) 233, 757, 942
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 512, 974
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 6 cut(s) 233, 246, 813, 942, 972, 1132
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 2 cut(s) 801, 1072
BtsI GCAGTG 1 cut(s) 1186
BtsIMutI CAGTG 3 cut(s) 297, 342, 1186
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 5 cut(s) 101, 865, 970, 971, 1130
Csp6I GTAC 4 cut(s) 36, 389, 414, 498
CviAII CATG 6 cut(s) 386, 455, 476, 492, 551, 740
CviQI GTAC 4 cut(s) 36, 389, 414, 498
DdeI CTNAG 3 cut(s) 228, 345, 567
DpnI GATC 5 cut(s) 649, 701, 932, 981, 1046
DpnII GATC 5 cut(s) 647, 699, 930, 979, 1044
DraI TTTAAA 1 cut(s) 1011
EaeI YGGCCR 2 cut(s) 244, 940
Eco24I GRGCYC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 101, 865
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 4 cut(s) 865, 970, 971, 1130
EcoRII CCWGG 3 cut(s) 233, 757, 942
EcoRV GATATC 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 974
FaeI CATG 6 cut(s) 389, 458, 479, 495, 554, 743
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FatI CATG 6 cut(s) 385, 454, 475, 491, 550, 739
FauNDI CATATG 2 cut(s) 597, 1081
Fnu4HI GCNGC 2 cut(s) 402, 541
FokI GGATG 2 cut(s) 788, 1079
FriOI GRGCYC 1 cut(s) 974
Fsp4HI GCNGC 2 cut(s) 402, 541
GluI GCNGC 2 cut(s) 402, 541
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 6 cut(s) 233, 246, 813, 942, 972, 1132
Hin1II CATG 6 cut(s) 389, 458, 479, 495, 554, 743
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 2 cut(s) 986, 1142
HinfI GANTC 6 cut(s) 66, 379, 481, 717, 826, 923
HphI GGTGA 2 cut(s) 785, 812
Hpy166II GTNNAC 2 cut(s) 101, 276
Hpy188I TCNGA 6 cut(s) 154, 674, 984, 1040, 1057, 1161
Hpy188III TCNNGA 4 cut(s) 191, 227, 551, 977
Hpy8I GTNNAC 2 cut(s) 101, 276
HpyAV CCTTC 3 cut(s) 433, 525, 669
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 7 cut(s) 595, 872, 887, 902, 913, 956, 1024
HpyF3I CTNAG 3 cut(s) 228, 345, 567
Hsp92II CATG 6 cut(s) 389, 458, 479, 495, 554, 743
Kzo9I GATC 5 cut(s) 647, 699, 930, 979, 1044
LmnI GCTCC 2 cut(s) 659, 1058
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 896
MalI GATC 5 cut(s) 649, 701, 932, 981, 1046
MboI GATC 5 cut(s) 647, 699, 930, 979, 1044
MboII GAAGA 7 cut(s) 26, 158, 307, 361, 388, 448, 647
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 512, 974
MlsI TGGCCA 1 cut(s) 942
MluCI AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1170
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 942
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 942
MseI TTAA 2 cut(s) 696, 1010
MslI CAYNNNNRTG 2 cut(s) 474, 555
Msp20I TGGCCA 1 cut(s) 942
MspR9I CCNGG 3 cut(s) 235, 759, 944
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 235, 759, 944
NdeI CATATG 2 cut(s) 597, 1081
NdeII GATC 5 cut(s) 647, 699, 930, 979, 1044
NlaIII CATG 6 cut(s) 389, 458, 479, 495, 554, 743
NlaIV GGNNCC 3 cut(s) 509, 972, 1054
NspI RCATGY 1 cut(s) 743
PagI TCATGA 1 cut(s) 550
PciI ACATGT 1 cut(s) 739
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 5 cut(s) 379, 481, 717, 826, 923
PkrI GCNGC 2 cut(s) 403, 542
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 865
PscI ACATGT 1 cut(s) 739
PshAI GACNNNNGTC 1 cut(s) 1082
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 3 cut(s) 233, 757, 942
PspGI CCWGG 3 cut(s) 233, 757, 942
PspN4I GGNNCC 3 cut(s) 509, 972, 1054
PspOMI GGGCCC 1 cut(s) 970
PspPI GGNCC 5 cut(s) 101, 865, 970, 971, 1130
PspPPI RGGWCCY 1 cut(s) 865
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
PsuI RGATCY 1 cut(s) 699
RsaI GTAC 4 cut(s) 37, 390, 415, 499
RsaNI GTAC 4 cut(s) 36, 389, 414, 498
RseI CAYNNNNRTG 2 cut(s) 474, 555
SaqAI TTAA 2 cut(s) 696, 1010
SatI GCNGC 2 cut(s) 402, 541
Sau3AI GATC 5 cut(s) 647, 699, 930, 979, 1044
Sau96I GGNCC 5 cut(s) 101, 865, 970, 971, 1130
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 235, 759, 944
SduI GDGCHC 2 cut(s) 512, 974
SfaNI GCATC 1 cut(s) 896
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 101, 865
SmiMI CAYNNNNRTG 2 cut(s) 474, 555
SmlI CTYRAG 3 cut(s) 115, 704, 975
SmoI CTYRAG 3 cut(s) 115, 704, 975
Sse9I AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1170
SsiI CCGC 1 cut(s) 541
SspI AATATT 1 cut(s) 1115
StyD4I CCNGG 3 cut(s) 233, 757, 942
TaaI ACNGT 1 cut(s) 292
TasI AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1170
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 5 cut(s) 379, 481, 717, 826, 923
Tru1I TTAA 2 cut(s) 696, 1010
Tru9I TTAA 2 cut(s) 696, 1010
TscAI CASTG 3 cut(s) 297, 349, 1186
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 474, 624, 1178
TspGWI ACGGA 2 cut(s) 68, 1037
TspRI CASTG 3 cut(s) 297, 349, 1186
VpaK11BI GGWCC 2 cut(s) 101, 865
XapI RAATTY 3 cut(s) 147, 239, 329
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.