Rorug07G0087700

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000355
Physical Location & Seq
Forward (+)
6900443 .. 6900730
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0087700.1

Sequence Viewer

Length: 288 bp
ATGGAGGTTTTCCATTCCACGCTCCCCGTCTCCGCCATCATGGACGGGCTCGAGAAGATACGCCGTAAGGAAAACGGTATTCCGCTTGGCCAAATGCAGAGTGACAAGACCGTCGGCGGTGGAGACGACGCCTTCAACACTTTCTTCAATGAAACCGGAGCCGGATTGCACGTCCCCCGCGCCGTGTTCCTGGATCTGGAGCCCACCGTCATCAACGAGGAGGACCGGAACTTACCGGCTGTTCCACCCCGAGCAGCTCATCAGCGGCAAAGAGGACGCCGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

95

Amino Acids

10.55

Weight (kDa)

6.27

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 1 cut(s) 180
AciI CCGC 6 cut(s) 33, 83, 117, 178, 265, 280
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 88
AcyI GRCGYC 2 cut(s) 129, 277
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 136, 148
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 34, 117
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 2 cut(s) 50, 249
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 223
AvaI CYCGRG 2 cut(s) 50, 249
AvaII GGWCC 1 cut(s) 223
BalI TGGCCA 1 cut(s) 90
BanII GRGCYC 2 cut(s) 51, 204
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 44
BceAI ACGGC 2 cut(s) 48, 167
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 34, 117
BisI GCNGC 3 cut(s) 255, 266, 280
BlsI GCNGC 3 cut(s) 256, 267, 281
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 2 cut(s) 50, 249
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 160, 201
BmrFI CCNGG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 218
BsaHI GRCGYC 2 cut(s) 129, 277
BsaWI WCCGGW 2 cut(s) 155, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 50, 249
BsiSI CCGG 4 cut(s) 156, 162, 226, 236
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 34, 117
BsmBI CGTCTC 2 cut(s) 34, 117
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 2 cut(s) 50, 249
Bsp1286I GDGCHC 2 cut(s) 51, 204
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 6 cut(s) 33, 83, 117, 178, 265, 280
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 160, 201
BspPI GGATC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 2 cut(s) 129, 277
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 77, 112, 208
BstACI GRCGYC 2 cut(s) 129, 277
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 34, 117
BstMBI GATC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 90
BtrI CACGTC 1 cut(s) 172
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 40
CviJI RGCY 6 cut(s) 49, 90, 161, 202, 239, 257
CviKI_1 RGCY 6 cut(s) 49, 90, 161, 202, 239, 257
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 88
EciI GGCGGA 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 51, 204
Eco47I GGWCC 1 cut(s) 223
Eco88I CYCGRG 2 cut(s) 50, 249
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 51, 204
Esp3I CGTCTC 2 cut(s) 34, 117
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 39
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 255, 266, 280
FriOI GRGCYC 2 cut(s) 51, 204
Fsp4HI GCNGC 3 cut(s) 255, 266, 280
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 255, 266, 280
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 90
HapII CCGG 4 cut(s) 156, 162, 226, 236
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 2 cut(s) 129, 277
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 4 cut(s) 156, 162, 226, 236
Hpy188III TCNNGA 2 cut(s) 52, 197
Hpy99I CGWCG 2 cut(s) 116, 131
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 3 cut(s) 77, 112, 208
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 97, 169
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 2 cut(s) 129, 277
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 27, 158, 199
LpnPI CCDG 7 cut(s) 169, 175, 176, 182, 203, 239, 249
Lsp1109I GCAGC 1 cut(s) 266
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 67, 136
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 51, 204
MlsI TGGCCA 1 cut(s) 90
MluNI TGGCCA 1 cut(s) 90
MnlI CCTC 3 cut(s) 211, 214, 266
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 4 cut(s) 156, 162, 226, 236
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 180
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 160, 201
NmuCI GTSAC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 256, 267, 281
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 160, 201
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 193
SatI GCNGC 3 cut(s) 255, 266, 280
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 2 cut(s) 51, 204
SetI ASST 3 cut(s) 9, 174, 259
Sfr274I CTCGAG 1 cut(s) 50
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 6 cut(s) 33, 83, 117, 178, 265, 280
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 77, 112, 208
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 51
TauI GCSGC 2 cut(s) 268, 282
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.