histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 335 - 477 | 5.4e-43 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1082 |
| AccB1I | GGYRCC | 1 cut(s) | 229 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 500 |
| AccIII | TCCGGA | 1 cut(s) | 1383 |
| AclWI | GGATC | 4 cut(s) | 498, 511, 524, 928 |
| AcsI | RAATTY | 3 cut(s) | 106, 181, 1418 |
| AcyI | GRCGYC | 1 cut(s) | 854 |
| AfaI | GTAC | 2 cut(s) | 64, 1352 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 271, 500, 1016 |
| AflIII | ACRYGT | 1 cut(s) | 1347 |
| AgsI | TTSAA | 6 cut(s) | 209, 800, 890, 1055, 1253, 1273 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 639 |
| AjnI | CCWGG | 3 cut(s) | 629, 784, 1015 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1265, 1297, 1396, 1428 |
| AluBI | AGCT | 7 cut(s) | 92, 581, 950, 1155, 1235, 1249, 1408 |
| AluI | AGCT | 7 cut(s) | 92, 581, 950, 1155, 1235, 1249, 1408 |
| Alw26I | GTCTC | 4 cut(s) | 206, 358, 406, 732 |
| AlwI | GGATC | 4 cut(s) | 498, 511, 524, 928 |
| Ama87I | CYCGRG | 2 cut(s) | 1086, 1398 |
| Aor13HI | TCCGGA | 1 cut(s) | 1383 |
| AoxI | GGCC | 3 cut(s) | 627, 1007, 1198 |
| ApeKI | GCWGC | 2 cut(s) | 761, 950 |
| ApoI | RAATTY | 3 cut(s) | 106, 181, 1418 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 288, 540 |
| AspLEI | GCGC | 2 cut(s) | 870, 1431 |
| AspS9I | GGNCC | 2 cut(s) | 386, 1007 |
| AsuHPI | GGTGA | 4 cut(s) | 29, 321, 483, 1043 |
| AvaI | CYCGRG | 2 cut(s) | 1086, 1398 |
| AvaII | GGWCC | 1 cut(s) | 386 |
| AxyI | CCTNAGG | 1 cut(s) | 1147 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 498, 531 |
| BamHI | GGATCC | 1 cut(s) | 503 |
| BanI | GGYRCC | 1 cut(s) | 229 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 250, 282 |
| BauI | CACGAG | 1 cut(s) | 561 |
| BbsI | GAAGAC | 1 cut(s) | 698 |
| BbvI | GCAGC | 2 cut(s) | 748, 937 |
| BccI | CCATC | 5 cut(s) | 241, 494, 679, 754, 1325 |
| BciT130I | CCWGG | 3 cut(s) | 631, 786, 1017 |
| BciVI | GTATCC | 1 cut(s) | 567 |
| BclI | TGATCA | 1 cut(s) | 1240 |
| BcoDI | GTCTC | 4 cut(s) | 206, 358, 406, 732 |
| BfaI | CTAG | 3 cut(s) | 93, 339, 896 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuAI | ACCTGC | 1 cut(s) | 1082 |
| BfuI | GTATCC | 1 cut(s) | 567 |
| BisI | GCNGC | 2 cut(s) | 762, 951 |
| BlsI | GCNGC | 2 cut(s) | 763, 952 |
| Bme1390I | CCNGG | 3 cut(s) | 631, 786, 1017 |
| Bme18I | GGWCC | 1 cut(s) | 386 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 639 |
| BmeT110I | CYCGRG | 2 cut(s) | 1086, 1398 |
| BmgT120I | GGNCC | 2 cut(s) | 386, 1007 |
| BmiI | GGNNCC | 2 cut(s) | 231, 505 |
| BmrFI | CCNGG | 3 cut(s) | 631, 786, 1017 |
| BmsI | GCATC | 4 cut(s) | 229, 831, 1098, 1146 |
| BpiI | GAAGAC | 1 cut(s) | 698 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1041, 1073 |
| BpuEI | CTTGAG | 2 cut(s) | 197, 947 |
| BsaAI | YACGTR | 1 cut(s) | 1348 |
| BsaBI | GATNNNNATC | 1 cut(s) | 508 |
| BsaHI | GRCGYC | 1 cut(s) | 854 |
| BsaI | GGTCTC | 2 cut(s) | 206, 406 |
| BsaJI | CCNNGG | 4 cut(s) | 294, 1015, 1201, 1223 |
| BsaWI | WCCGGW | 1 cut(s) | 1383 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 271, 500, 1016 |
| Bse21I | CCTNAGG | 1 cut(s) | 1147 |
| Bse3DI | GCAATG | 2 cut(s) | 863, 1180 |
| Bse8I | GATNNNNATC | 1 cut(s) | 508 |
| BseAI | TCCGGA | 1 cut(s) | 1383 |
| BseBI | CCWGG | 3 cut(s) | 631, 786, 1017 |
| BseDI | CCNNGG | 4 cut(s) | 294, 1015, 1201, 1223 |
| BseGI | GGATG | 1 cut(s) | 1291 |
| BseJI | GATNNNNATC | 1 cut(s) | 508 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 271, 500, 1016 |
| BseMI | GCAATG | 2 cut(s) | 863, 1180 |
| BseMII | CTCAG | 4 cut(s) | 284, 324, 410, 1161 |
| BseXI | GCAGC | 2 cut(s) | 748, 937 |
| BseYI | CCCAGC | 1 cut(s) | 68 |
| BshFI | GGCC | 3 cut(s) | 629, 1009, 1200 |
| BshNI | GGYRCC | 1 cut(s) | 229 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1086, 1398 |
| BsiSI | CCGG | 1 cut(s) | 1384 |
| BslFI | GGGAC | 3 cut(s) | 602, 734, 998 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 271, 500, 1016 |
| BsmAI | GTCTC | 4 cut(s) | 206, 358, 406, 732 |
| BsmBI | CGTCTC | 1 cut(s) | 732 |
| BsmFI | GGGAC | 3 cut(s) | 602, 734, 998 |
| BsmI | GAATGC | 1 cut(s) | 827 |
| BsnI | GGCC | 3 cut(s) | 629, 1009, 1200 |
| Bso31I | GGTCTC | 2 cut(s) | 206, 406 |
| BsoBI | CYCGRG | 2 cut(s) | 1086, 1398 |
| Bsp13I | TCCGGA | 1 cut(s) | 1383 |
| Bsp1407I | TGTACA | 1 cut(s) | 1350 |
| Bsp143I | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| Bsp19I | CCATGG | 1 cut(s) | 294 |
| BspANI | GGCC | 3 cut(s) | 629, 1009, 1200 |
| BspCNI | CTCAG | 4 cut(s) | 283, 325, 409, 1160 |
| BspEI | TCCGGA | 1 cut(s) | 1383 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 2 cut(s) | 231, 505 |
| BspMI | ACCTGC | 1 cut(s) | 1082 |
| BspPI | GGATC | 4 cut(s) | 498, 511, 524, 928 |
| BspT107I | GGYRCC | 1 cut(s) | 229 |
| BspTNI | GGTCTC | 2 cut(s) | 206, 406 |
| BsrDI | GCAATG | 2 cut(s) | 863, 1180 |
| BsrGI | TGTACA | 1 cut(s) | 1350 |
| BssECI | CCNNGG | 4 cut(s) | 294, 1015, 1201, 1223 |
| BssMI | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| BssNI | GRCGYC | 1 cut(s) | 854 |
| BssSI | CACGAG | 1 cut(s) | 561 |
| BssT1I | CCWWGG | 3 cut(s) | 294, 1201, 1223 |
| Bst2BI | CACGAG | 1 cut(s) | 561 |
| Bst2UI | CCWGG | 3 cut(s) | 631, 786, 1017 |
| Bst4CI | ACNGT | 3 cut(s) | 217, 688, 1280 |
| Bst6I | CTCTTC | 5 cut(s) | 19, 204, 447, 801, 1330 |
| BstACI | GRCGYC | 1 cut(s) | 854 |
| BstAUI | TGTACA | 1 cut(s) | 1350 |
| BstBAI | YACGTR | 1 cut(s) | 1348 |
| BstC8I | GCNNGC | 1 cut(s) | 995 |
| BstDEI | CTNAG | 5 cut(s) | 270, 324, 333, 396, 1147 |
| BstDSI | CCRYGG | 1 cut(s) | 294 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1014 |
| BstF5I | GGATG | 1 cut(s) | 1291 |
| BstHHI | GCGC | 2 cut(s) | 870, 1431 |
| BstKTI | GATC | 7 cut(s) | 506, 532, 829, 923, 943, 1243, 1302 |
| BstMAI | GTCTC | 4 cut(s) | 206, 358, 406, 732 |
| BstMBI | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 831, 860, 1077 |
| BstNI | CCWGG | 3 cut(s) | 631, 786, 1017 |
| BstNSI | RCATGY | 1 cut(s) | 1219 |
| BstSCI | CCNGG | 3 cut(s) | 629, 784, 1015 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 2 cut(s) | 748, 937 |
| BstV2I | GAAGAC | 1 cut(s) | 698 |
| BstX2I | RGATCY | 2 cut(s) | 503, 920 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 637 |
| BstYI | RGATCY | 2 cut(s) | 503, 920 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1147 |
| BsuI | GTATCC | 1 cut(s) | 567 |
| BsuRI | GGCC | 3 cut(s) | 629, 1009, 1200 |
| BtgI | CCRYGG | 1 cut(s) | 294 |
| BtgZI | GCGATG | 1 cut(s) | 1061 |
| BtsCI | GGATG | 1 cut(s) | 1291 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 693 |
| BveI | ACCTGC | 1 cut(s) | 1082 |
| Cac8I | GCNNGC | 1 cut(s) | 995 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CfoI | GCGC | 2 cut(s) | 870, 1431 |
| Cfr13I | GGNCC | 2 cut(s) | 386, 1007 |
| CseI | GACGC | 1 cut(s) | 843 |
| Csp6I | GTAC | 2 cut(s) | 63, 1351 |
| CviAII | CATG | 5 cut(s) | 18, 295, 365, 1112, 1216 |
| CviQI | GTAC | 2 cut(s) | 63, 1351 |
| DdeI | CTNAG | 5 cut(s) | 270, 324, 333, 396, 1147 |
| DpnI | GATC | 7 cut(s) | 505, 531, 828, 922, 942, 1242, 1301 |
| DpnII | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| DriI | GACNNNNNGTC | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 5 cut(s) | 19, 204, 447, 801, 1330 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 639 |
| EarI | CTCTTC | 5 cut(s) | 19, 204, 447, 801, 1330 |
| Eco130I | CCWWGG | 3 cut(s) | 294, 1201, 1223 |
| Eco31I | GGTCTC | 2 cut(s) | 206, 406 |
| Eco47I | GGWCC | 1 cut(s) | 386 |
| Eco81I | CCTNAGG | 1 cut(s) | 1147 |
| Eco88I | CYCGRG | 2 cut(s) | 1086, 1398 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1014 |
| EcoRII | CCWGG | 3 cut(s) | 629, 784, 1015 |
| EcoT14I | CCWWGG | 3 cut(s) | 294, 1201, 1223 |
| EcoT22I | ATGCAT | 1 cut(s) | 1113 |
| ErhI | CCWWGG | 3 cut(s) | 294, 1201, 1223 |
| Esp3I | CGTCTC | 1 cut(s) | 732 |
| FaeI | CATG | 5 cut(s) | 21, 298, 368, 1115, 1219 |
| FaqI | GGGAC | 3 cut(s) | 602, 734, 998 |
| FatI | CATG | 5 cut(s) | 17, 294, 364, 1111, 1215 |
| FauNDI | CATATG | 1 cut(s) | 391 |
| FbaI | TGATCA | 1 cut(s) | 1240 |
| Fnu4HI | GCNGC | 2 cut(s) | 762, 951 |
| FokI | GGATG | 1 cut(s) | 1298 |
| Fsp4HI | GCNGC | 2 cut(s) | 762, 951 |
| FspBI | CTAG | 3 cut(s) | 93, 339, 896 |
| GlaI | GCGC | 2 cut(s) | 869, 1430 |
| GluI | GCNGC | 2 cut(s) | 762, 951 |
| GsaI | CCCAGC | 1 cut(s) | 72 |
| HaeIII | GGCC | 3 cut(s) | 629, 1009, 1200 |
| HapII | CCGG | 1 cut(s) | 1384 |
| HgaI | GACGC | 1 cut(s) | 843 |
| HhaI | GCGC | 2 cut(s) | 870, 1431 |
| Hin1I | GRCGYC | 1 cut(s) | 854 |
| Hin1II | CATG | 5 cut(s) | 21, 298, 368, 1115, 1219 |
| Hin6I | GCGC | 2 cut(s) | 868, 1429 |
| HinP1I | GCGC | 2 cut(s) | 868, 1429 |
| HindIII | AAGCTT | 2 cut(s) | 1233, 1247 |
| HpaII | CCGG | 1 cut(s) | 1384 |
| HphI | GGTGA | 4 cut(s) | 29, 321, 483, 1043 |
| Hpy166II | GTNNAC | 3 cut(s) | 386, 985, 1351 |
| Hpy188I | TCNGA | 5 cut(s) | 913, 1245, 1299, 1304, 1330 |
| Hpy8I | GTNNAC | 3 cut(s) | 386, 985, 1351 |
| HpyAV | CCTTC | 8 cut(s) | 276, 606, 844, 911, 961, 965, 969, 1332 |
| HpyCH4III | ACNGT | 3 cut(s) | 217, 688, 1280 |
| HpyCH4IV | ACGT | 1 cut(s) | 1347 |
| HpyCH4V | TGCA | 6 cut(s) | 122, 191, 220, 863, 953, 1111 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 831, 860, 1077 |
| HpyF3I | CTNAG | 5 cut(s) | 270, 324, 333, 396, 1147 |
| HpySE526I | ACGT | 1 cut(s) | 1347 |
| Hsp92I | GRCGYC | 1 cut(s) | 854 |
| Hsp92II | CATG | 5 cut(s) | 21, 298, 368, 1115, 1219 |
| HspAI | GCGC | 2 cut(s) | 868, 1429 |
| Kpn2I | TCCGGA | 1 cut(s) | 1383 |
| Ksp22I | TGATCA | 1 cut(s) | 1240 |
| Kzo9I | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| LmnI | GCTCC | 1 cut(s) | 1152 |
| Lsp1109I | GCAGC | 2 cut(s) | 748, 937 |
| LweI | GCATC | 4 cut(s) | 229, 831, 1098, 1146 |
| MaeI | CTAG | 3 cut(s) | 93, 339, 896 |
| MaeII | ACGT | 1 cut(s) | 1347 |
| MaeIII | GTNAC | 6 cut(s) | 52, 95, 249, 327, 662, 1369 |
| MalI | GATC | 7 cut(s) | 505, 531, 828, 922, 942, 1242, 1301 |
| MboI | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| MfeI | CAATTG | 1 cut(s) | 1062 |
| MflI | RGATCY | 2 cut(s) | 503, 920 |
| MlyI | GAGTC | 4 cut(s) | 344, 360, 1078, 1299 |
| MmeI | TCCRAC | 2 cut(s) | 453, 1100 |
| Mph1103I | ATGCAT | 1 cut(s) | 1113 |
| MroI | TCCGGA | 1 cut(s) | 1383 |
| MroXI | GAANNNNTTC | 2 cut(s) | 288, 540 |
| MseI | TTAA | 7 cut(s) | 6, 42, 101, 113, 401, 680, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 839 |
| MspI | CCGG | 1 cut(s) | 1384 |
| MspR9I | CCNGG | 3 cut(s) | 631, 786, 1017 |
| MunI | CAATTG | 1 cut(s) | 1062 |
| Mva1269I | GAATGC | 1 cut(s) | 827 |
| MvaI | CCWGG | 3 cut(s) | 631, 786, 1017 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 831, 860, 1077 |
| NcoI | CCATGG | 1 cut(s) | 294 |
| NdeI | CATATG | 1 cut(s) | 391 |
| NdeII | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| NlaIII | CATG | 5 cut(s) | 21, 298, 368, 1115, 1219 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 505 |
| NmuCI | GTSAC | 2 cut(s) | 249, 327 |
| NsiI | ATGCAT | 1 cut(s) | 1113 |
| NspI | RCATGY | 1 cut(s) | 1219 |
| PaeR7I | CTCGAG | 1 cut(s) | 1086 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1084 |
| PctI | GAATGC | 1 cut(s) | 827 |
| PdmI | GAANNNNTTC | 2 cut(s) | 288, 540 |
| PfeI | GAWTC | 6 cut(s) | 158, 167, 541, 793, 958, 1123 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 500 |
| PkrI | GCNGC | 2 cut(s) | 763, 952 |
| PleI | GAGTC | 4 cut(s) | 343, 359, 1078, 1299 |
| PpsI | GAGTC | 4 cut(s) | 343, 359, 1078, 1299 |
| Ppu21I | YACGTR | 1 cut(s) | 1348 |
| Psp6I | CCWGG | 3 cut(s) | 629, 784, 1015 |
| PspFI | CCCAGC | 1 cut(s) | 68 |
| PspGI | CCWGG | 3 cut(s) | 629, 784, 1015 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 505 |
| PspPI | GGNCC | 2 cut(s) | 386, 1007 |
| PspXI | VCTCGAGB | 1 cut(s) | 1086 |
| PsuI | RGATCY | 2 cut(s) | 503, 920 |
| RsaI | GTAC | 2 cut(s) | 64, 1352 |
| RsaNI | GTAC | 2 cut(s) | 63, 1351 |
| RseI | CAYNNNNRTG | 1 cut(s) | 839 |
| SaqAI | TTAA | 7 cut(s) | 6, 42, 101, 113, 401, 680, 945 |
| SatI | GCNGC | 2 cut(s) | 762, 951 |
| Sau3AI | GATC | 7 cut(s) | 503, 529, 826, 920, 940, 1240, 1299 |
| Sau96I | GGNCC | 2 cut(s) | 386, 1007 |
| SchI | GAGTC | 4 cut(s) | 344, 360, 1078, 1299 |
| ScrFI | CCNGG | 3 cut(s) | 631, 786, 1017 |
| SfaNI | GCATC | 4 cut(s) | 229, 831, 1098, 1146 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| Sfr274I | CTCGAG | 1 cut(s) | 1086 |
| SinI | GGWCC | 1 cut(s) | 386 |
| SlaI | CTCGAG | 1 cut(s) | 1086 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 839 |
| SmlI | CTYRAG | 3 cut(s) | 176, 962, 1086 |
| SmoI | CTYRAG | 3 cut(s) | 176, 962, 1086 |
| SspMI | CTAG | 3 cut(s) | 93, 339, 896 |
| StyD4I | CCNGG | 3 cut(s) | 629, 784, 1015 |
| StyI | CCWWGG | 3 cut(s) | 294, 1201, 1223 |
| TaaI | ACNGT | 3 cut(s) | 217, 688, 1280 |
| TaiI | ACGT | 1 cut(s) | 1350 |
| TaqI | TCGA | 3 cut(s) | 544, 1087, 1336 |
| TatI | WGTACW | 1 cut(s) | 1350 |
| TfiI | GAWTC | 6 cut(s) | 158, 167, 541, 793, 958, 1123 |
| Tru1I | TTAA | 7 cut(s) | 6, 42, 101, 113, 401, 680, 945 |
| Tru9I | TTAA | 7 cut(s) | 6, 42, 101, 113, 401, 680, 945 |
| TscAI | CASTG | 2 cut(s) | 193, 693 |
| TseFI | GTSAC | 2 cut(s) | 249, 327 |
| TseI | GCWGC | 2 cut(s) | 761, 950 |
| Tsp45I | GTSAC | 2 cut(s) | 249, 327 |
| TspRI | CASTG | 2 cut(s) | 193, 693 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 386 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1014 |
| XapI | RAATTY | 3 cut(s) | 106, 181, 1418 |
| XbaI | TCTAGA | 1 cut(s) | 895 |
| XceI | RCATGY | 1 cut(s) | 1219 |
| XhoI | CTCGAG | 1 cut(s) | 1086 |
| XmnI | GAANNNNTTC | 2 cut(s) | 288, 540 |
| XspI | CTAG | 3 cut(s) | 93, 339, 896 |
| Zsp2I | ATGCAT | 1 cut(s) | 1113 |